Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

15166652 .. 15167221

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCTGAACCAACCTGAGATGCTTACAAAAGCACAAGAGGAACTAAATAGGATAGTGGGAATTGACATGCTTGTTCAAGAATCTCATATCCGGCATCTCCCTTACATAAGGGCTTGTGCAAGAGAATCGCTCAGGCTGCATCCAGTTGCACCATTCAATGTTCCCCATTTTTCCACTGCTGATGCTATAGTAGCAGGCTACTTCATCCCAAAGGGCAGTAGTGTTCTTCTAAGTCGTTTAGGCCTCGGACGCAACCCCAAAGTCTGGGAAAACCCGTTGAGATTCGACCCCGAGCGTCATCTAAGTGGAGATGCCAGTCAACAAGTAGAGCTGGAAGAACGTGATCTGAGGTTCATTTCATTTACTACTGGAAGGAGAGGTTGCATTGGTGGTACGCTTGGGACTACCATAACTGTGATGCTCCTTGCTAGGCTTCTTCAAGGGTTTACATGGAGCATGCCACCCAAGGTGGATAAGATTGACCTCACTGAGGCTCCAACCCTTTTCAAGCTCAATCCATTGCATGCACATGCTAAACCTCGCTTGCCTGCTGCTATGTACCCGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

189

Amino Acids

21.21

Weight (kDa)

9.3

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 172	1.2e-43	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	394, 560
AfiI	CCNNNNNNNGG	2 cut(s)	264, 490
AgsI	TTSAA	4 cut(s)	77, 157, 440, 508
AluBI	AGCT	2 cut(s)	331, 511
AluI	AGCT	2 cut(s)	331, 511
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	136, 551
AvaI	CYCGRG	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	123, 538
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	2 cut(s)	137, 552
BlsI	GCNGC	2 cut(s)	138, 553
BmeT110I	CYCGRG	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	495
BmsI	GCATC	6 cut(s)	9, 103, 148, 172, 301, 408
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
Bpu10I	CCTNAGC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	244, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 490
Bse1I	ACTGG	3 cut(s)	143, 315, 373
Bse3DI	GCAATG	1 cut(s)	518
BseDI	CCNNGG	2 cut(s)	244, 465
BseGI	GGATG	2 cut(s)	139, 204
BseLI	CCNNNNNNNGG	2 cut(s)	264, 490
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	4 cut(s)	6, 145, 338, 480
BseNI	ACTGG	3 cut(s)	143, 315, 373
BseXI	GCAGC	2 cut(s)	123, 538
BshFI	GGCC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	264, 490
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	4 cut(s)	7, 144, 339, 481
BspLI	GGNNCC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	518
BsrI	ACTGG	3 cut(s)	143, 315, 373
BssECI	CCNNGG	2 cut(s)	244, 465
BssMI	GATC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	415
BstC8I	GCNNGC	5 cut(s)	196, 458, 525, 545, 549
BstDEI	CTNAG	6 cut(s)	15, 131, 230, 302, 347, 489
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	139, 204
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 191, 249
BstNSI	RCATGY	4 cut(s)	70, 460, 527, 533
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	123, 538
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	139, 204
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 486
Cac8I	GCNNGC	5 cut(s)	196, 458, 525, 545, 549
CseI	GACGC	2 cut(s)	258, 284
Csp6I	GTAC	2 cut(s)	393, 559
CviAII	CATG	5 cut(s)	67, 450, 457, 524, 530
CviJI	RGCY	8 cut(s)	113, 136, 198, 243, 331, 433, 494, 511
CviKI_1	RGCY	8 cut(s)	113, 136, 198, 243, 331, 433, 494, 511
CviQI	GTAC	2 cut(s)	393, 559
DdeI	CTNAG	6 cut(s)	15, 131, 230, 302, 347, 489
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	5 cut(s)	70, 453, 460, 527, 533
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	5 cut(s)	66, 449, 456, 523, 529
Fnu4HI	GCNGC	2 cut(s)	137, 552
FokI	GGATG	2 cut(s)	126, 191
Fsp4HI	GCNGC	2 cut(s)	137, 552
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	2 cut(s)	137, 552
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	91
HgaI	GACGC	2 cut(s)	258, 284
Hin1II	CATG	5 cut(s)	70, 453, 460, 527, 533
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HinfI	GANTC	3 cut(s)	80, 125, 282
HpaII	CCGG	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	320, 447
Hpy188I	TCNGA	2 cut(s)	248, 348
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	2 cut(s)	320, 447
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	6 cut(s)	119, 139, 149, 384, 523, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 191, 249
HpyF3I	CTNAG	6 cut(s)	15, 131, 230, 302, 347, 489
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	5 cut(s)	70, 453, 460, 527, 533
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	3 cut(s)	426, 453, 499
Lsp1109I	GCAGC	2 cut(s)	123, 538
LweI	GCATC	6 cut(s)	9, 103, 148, 172, 301, 408
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	340
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	3 cut(s)	218, 347, 428
MluCI	AATT	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	7 cut(s)	31, 254, 342, 371, 484, 494, 549
MslI	CAYNNNNRTG	3 cut(s)	303, 413, 528
MspI	CCGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	136, 191, 249
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	5 cut(s)	70, 453, 460, 527, 533
NlaIV	GGNNCC	1 cut(s)	495
NspI	RCATGY	4 cut(s)	70, 460, 527, 533
PaeI	GCATGC	2 cut(s)	460, 527
PceI	AGGCCT	1 cut(s)	243
PfeI	GAWTC	3 cut(s)	80, 125, 282
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	138, 553
PspN4I	GGNNCC	1 cut(s)	495
RsaI	GTAC	2 cut(s)	394, 560
RsaNI	GTAC	2 cut(s)	393, 559
RseI	CAYNNNNRTG	3 cut(s)	303, 413, 528
SatI	GCNGC	2 cut(s)	137, 552
Sau3AI	GATC	1 cut(s)	343
SetI	ASST	9 cut(s)	16, 333, 343, 353, 382, 471, 486, 513, 541
SfaNI	GCATC	6 cut(s)	9, 103, 148, 172, 301, 408
SfcI	CTRYAG	1 cut(s)	186
SmiMI	CAYNNNNRTG	3 cut(s)	303, 413, 528
SphI	GCATGC	2 cut(s)	460, 527
Sse9I	AATT	1 cut(s)	60
SseBI	AGGCCT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	429
StuI	AGGCCT	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	80, 125, 282
TscAI	CASTG	2 cut(s)	181, 493
TseI	GCWGC	2 cut(s)	136, 551
TspDTI	ATGAA	3 cut(s)	193, 343, 348
TspRI	CASTG	2 cut(s)	181, 493
Van91I	CCANNNNNTGG	1 cut(s)	264
XagI	CCTNNNNNAGG	1 cut(s)	488
XceI	RCATGY	4 cut(s)	70, 460, 527, 533
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.