Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001093.1

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

55933 .. 56747

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001093.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggctactcactacttaagtaatgggtacttgacaacagcttttgcacctttgggagagcagtggaagaaagtgaaaagagttttggttaccgacgtattgaatcagtccagactccagtggctactcgataaaagaaacgatgaagcggacaatcttgtgaagtttctctacagtcagtgctcgaacagtgagaatggttcggtggtgaatgtgagaaatgcagcccaacattactcagcgaatgtgataaggaggatgatcttcaacacgaggtactttggcaatggaagggaggatggaggaccaggacttgaagagagacatgtctttgcgcttttcacaatactcttgcatctcaatgtcttgtatgtatccgattaccttccatggctgagaccgtttgacataggtgggcatgagaaaaaggtgagggatgctttgaaaattatcaagcaatatgaggaccctattatagatgagagagtacgaaagtggaggtgctctaatcaggaaaattggatcaaggagcctgtagaggagaacttgctcgatgttttcatctctctcaaaggtgcagatgggcagcctttaatatcaactgaagaaatcaaagcacaaatcactgtaagatattcttatctctactactataattggaggccctcttttggtgccaaagggcttcaccaaattttaacttgcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

236

Amino Acids

27.49

Weight (kDa)

8.64

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	674
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	530
AcsI	RAATTY	1 cut(s)	693
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	3 cut(s)	29, 278, 489
AfiI	CCNNNNNNNGG	1 cut(s)	671
AflII	CTTAAG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	4 cut(s)	103, 268, 317, 445
AjnI	CCWGG	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw21I	GWGCWC	2 cut(s)	185, 506
Alw26I	GTCTC	2 cut(s)	316, 391
AlwI	GGATC	1 cut(s)	530
AoxI	GGCC	1 cut(s)	662
ApeKI	GCWGC	2 cut(s)	224, 586
ApoI	RAATTY	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	3 cut(s)	305, 466, 663
AsuHPI	GGTGA	3 cut(s)	220, 442, 680
AvaII	GGWCC	2 cut(s)	305, 466
BanI	GGYRCC	1 cut(s)	674
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BauI	CACGAG	1 cut(s)	271
Bbv12I	GWGCWC	2 cut(s)	185, 506
BbvI	GCAGC	2 cut(s)	236, 598
BccI	CCATC	2 cut(s)	293, 575
BciT130I	CCWGG	1 cut(s)	309
BciVI	GTATCC	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	316, 391
BfmI	CTRYAG	2 cut(s)	172, 534
BfrI	CTTAAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	225, 587
BlsI	GCNGC	2 cut(s)	226, 588
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	305, 466
BmgT120I	GGNCC	3 cut(s)	305, 466, 663
BmiI	GGNNCC	3 cut(s)	468, 531, 676
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	364, 427
BpmI	CTGGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	3 cut(s)	264, 304, 442
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	252, 386
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	2 cut(s)	236, 598
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	664
BshNI	GGYRCC	1 cut(s)	674
BsiHKAI	GWGCWC	2 cut(s)	185, 506
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	2 cut(s)	316, 391
BsnI	GGCC	1 cut(s)	664
Bso31I	GGTCTC	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	185, 506
Bsp143I	GATC	2 cut(s)	261, 522
Bsp19I	CCATGG	1 cut(s)	389
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	664
BspCNI	CTCAG	2 cut(s)	251, 387
BspLI	GGNNCC	3 cut(s)	468, 531, 676
BspPI	GGATC	1 cut(s)	530
BspT107I	GGYRCC	1 cut(s)	674
BspTI	CTTAAG	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	2 cut(s)	261, 522
BssSI	CACGAG	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	389
Bst2BI	CACGAG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	4 cut(s)	176, 191, 402, 628
Bst6I	CTCTTC	1 cut(s)	312
BstAFI	CTTAAG	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	238, 395
BstDSI	CCRYGG	1 cut(s)	389
BstEII	GGTNACC	1 cut(s)	88
BstF5I	GGATG	3 cut(s)	264, 304, 442
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	264, 525
BstMAI	GTCTC	2 cut(s)	316, 391
BstMBI	GATC	2 cut(s)	261, 522
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	329
BstPI	GGTNACC	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	2 cut(s)	172, 534
BstV1I	GCAGC	2 cut(s)	236, 598
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	664
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	3 cut(s)	264, 304, 442
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	5 cut(s)	68, 125, 185, 196, 624
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	305, 466, 663
Csp6I	GTAC	3 cut(s)	28, 277, 488
CviAII	CATG	3 cut(s)	326, 390, 419
CviJI	RGCY	9 cut(s)	5, 41, 124, 227, 394, 532, 589, 664, 685
CviKI_1	RGCY	9 cut(s)	5, 41, 124, 227, 394, 532, 589, 664, 685
CviQI	GTAC	3 cut(s)	28, 277, 488
DdeI	CTNAG	2 cut(s)	238, 395
DpnI	GATC	2 cut(s)	263, 524
DpnII	GATC	2 cut(s)	261, 522
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	389
Eco31I	GGTCTC	1 cut(s)	391
Eco47I	GGWCC	2 cut(s)	305, 466
Eco57I	CTGAAG	1 cut(s)	624
Eco91I	GGTNACC	1 cut(s)	88
EcoO109I	RGGNCCY	2 cut(s)	466, 663
EcoO65I	GGTNACC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	3 cut(s)	329, 393, 422
FaiI	YATR	9 cut(s)	327, 372, 391, 410, 420, 462, 476, 654, 709
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FatI	CATG	3 cut(s)	325, 389, 418
Fnu4HI	GCNGC	2 cut(s)	225, 587
FokI	GGATG	3 cut(s)	271, 311, 449
Fsp4HI	GCNGC	2 cut(s)	225, 587
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	2 cut(s)	225, 587
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	664
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	3 cut(s)	329, 393, 422
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	2 cut(s)	103, 114
HphI	GGTGA	3 cut(s)	220, 442, 680
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	2 cut(s)	111, 512
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	285, 395
HpyCH4III	ACNGT	4 cut(s)	176, 191, 402, 628
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	4 cut(s)	47, 224, 355, 578
HpyF3I	CTNAG	2 cut(s)	238, 395
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	329, 393, 422
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	261, 522
LmnI	GCTCC	1 cut(s)	529
LpnPI	CCDG	6 cut(s)	124, 131, 294, 321, 497, 546
Lsp1109I	GCAGC	2 cut(s)	236, 598
LweI	GCATC	2 cut(s)	364, 427
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	263, 524
MboI	GATC	2 cut(s)	261, 522
MboII	GAAGA	4 cut(s)	79, 256, 329, 617
MhlI	GDGCHC	2 cut(s)	185, 506
MluCI	AATT	4 cut(s)	447, 517, 655, 693
MlyI	GAGTC	1 cut(s)	108
MseI	TTAA	3 cut(s)	17, 593, 698
MslI	CAYNNNNRTG	1 cut(s)	360
MspCI	CTTAAG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	389
NdeII	GATC	2 cut(s)	261, 522
NlaIII	CATG	3 cut(s)	329, 393, 422
NlaIV	GGNNCC	3 cut(s)	468, 531, 676
NspI	RCATGY	1 cut(s)	329
PciI	ACATGT	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	226, 588
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	466
PscI	ACATGT	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	307
PspEI	GGTNACC	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	3 cut(s)	468, 531, 676
PspPI	GGNCC	3 cut(s)	305, 466, 663
PspPPI	RGGWCCY	1 cut(s)	466
RsaI	GTAC	3 cut(s)	29, 278, 489
RsaNI	GTAC	3 cut(s)	28, 277, 488
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	17, 593, 698
SatI	GCNGC	2 cut(s)	225, 587
Sau3AI	GATC	2 cut(s)	261, 522
Sau96I	GGNCC	3 cut(s)	305, 466, 663
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	185, 506
SetI	ASST	9 cut(s)	43, 52, 99, 278, 387, 415, 432, 503, 577
SfaNI	GCATC	2 cut(s)	364, 427
SfcI	CTRYAG	2 cut(s)	172, 534
SinI	GGWCC	2 cut(s)	305, 466
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	4 cut(s)	447, 517, 655, 693
SsiI	CCGC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	389
TaaI	ACNGT	4 cut(s)	176, 191, 402, 628
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	3 cut(s)	129, 185, 552
TasI	AATT	4 cut(s)	447, 517, 655, 693
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	3 cut(s)	17, 593, 698
Tru9I	TTAA	3 cut(s)	17, 593, 698
TscAI	CASTG	5 cut(s)	68, 125, 185, 196, 631
TseI	GCWGC	2 cut(s)	224, 586
TspDTI	ATGAA	2 cut(s)	159, 550
TspRI	CASTG	5 cut(s)	68, 125, 185, 196, 631
Vha464I	CTTAAG	1 cut(s)	16
VpaK11BI	GGWCC	2 cut(s)	305, 466
XapI	RAATTY	1 cut(s)	693
XceI	RCATGY	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.