Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002532.1

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

235912 .. 236765

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002532.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgagaagagctttggttgccaacgtgtttaatcagtccagactccggtggctactcaataagagaaacgatgaagcagacaatcttgtgaagttcctttacaatcagtgctcaaacagtgagaatggttcggtggtgaatgtgagaaatgcagcccaacattacccagcaaatgtgatgagaaggatgatcttcaacacgaggtattttggaaaaggaagagaggatggagggccaggactggaagaggaaagacacatctctgctcttttcacaatactcttgcattcgtatgcattctgtgtatccgattaccttccatgtctgagaccgtttgacataggtgggcatgagaagaaagtgaggaatgctttgaaaattatcaagcagtatcaggaccctattatagatgagagagtacggaagtggaggtgctctaatcaggaaaataggatcaaggagcttgtagaggaggacctgcttgatgttttcatctcactcaaaggtgcagatgggcagcctttattatcagctaaagaaatcaaagcacaaatcactgcccgttccaaagcggacgttcgcactatcgctaaagtgcagacgtcgatcttttgtaggccgcgatggccttgcaaatcgggtctgatggaggctggacgcatcccagacctcttttgggcagcgatcaaggttgcaggtttctgggcagtgacctcacctgcaactgcaggttcttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

246

Amino Acids

28.09

Weight (kDa)

9.59

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
AatII	GACGTC	1 cut(s)	605
Acc36I	ACCTGC	4 cut(s)	486, 686, 719, 727
AccII	CGCG	1 cut(s)	622
AciI	CCGC	2 cut(s)	572, 620
AclWI	GGATC	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	602
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	45, 676
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	196, 376
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	3 cut(s)	11, 463, 533
AluI	AGCT	3 cut(s)	11, 463, 533
Alw21I	GWGCWC	2 cut(s)	113, 437
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	461
AoxI	GGCC	3 cut(s)	233, 617, 626
ApeKI	GCWGC	3 cut(s)	152, 517, 680
AspS9I	GGNCC	3 cut(s)	233, 397, 475
AsuHPI	GGTGA	2 cut(s)	148, 708
AvaII	GGWCC	2 cut(s)	397, 475
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BauI	CACGAG	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	113, 437
BbvI	GCAGC	3 cut(s)	164, 529, 692
BccI	CCATC	4 cut(s)	221, 506, 618, 640
BcgI	CGANNNNNNTGC	2 cut(s)	612, 646
BciT130I	CCWGG	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	322
BfmI	CTRYAG	1 cut(s)	726
BfuAI	ACCTGC	4 cut(s)	486, 686, 719, 727
BfuI	GTATCC	1 cut(s)	316
BglI	GCCNNNNNGGC	1 cut(s)	625
BisI	GCNGC	4 cut(s)	153, 518, 620, 681
BlsI	GCNGC	4 cut(s)	154, 519, 621, 682
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	2 cut(s)	397, 475
BmgT120I	GGNCC	3 cut(s)	233, 397, 475
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 676
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	3 cut(s)	192, 232, 660
BseLI	CCNNNNNNNGG	2 cut(s)	45, 676
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	3 cut(s)	164, 529, 692
BseYI	CCCAGC	1 cut(s)	166
BsgI	GTGCAG	2 cut(s)	528, 617
Bsh1236I	CGCG	1 cut(s)	622
BshFI	GGCC	3 cut(s)	235, 619, 628
BsiHKAI	GWGCWC	2 cut(s)	113, 437
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	45, 676
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	3 cut(s)	286, 296, 373
BsnI	GGCC	3 cut(s)	235, 619, 628
Bso31I	GGTCTC	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	113, 437
Bsp143I	GATC	4 cut(s)	189, 453, 606, 684
BspACI	CCGC	2 cut(s)	572, 620
BspANI	GGCC	3 cut(s)	235, 619, 628
BspCNI	CTCAG	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	730
BspMI	ACCTGC	4 cut(s)	486, 686, 719, 727
BspPI	GGATC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	246
BssMI	GATC	4 cut(s)	189, 453, 606, 684
BssNI	GRCGYC	1 cut(s)	602
BssSI	CACGAG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	119, 333
Bst6I	CTCTTC	2 cut(s)	214, 240
BstACI	GRCGYC	1 cut(s)	602
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	192, 232, 660
BstFNI	CGCG	1 cut(s)	622
BstKTI	GATC	4 cut(s)	192, 456, 609, 687
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	4 cut(s)	189, 453, 606, 684
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 625
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	726
BstUI	CGCG	1 cut(s)	622
BstV1I	GCAGC	3 cut(s)	164, 529, 692
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	235, 619, 628
BtgZI	GCGATG	1 cut(s)	637
BtsCI	GGATG	3 cut(s)	192, 232, 660
BtsI	GCAGTG	2 cut(s)	555, 714
BtsIMutI	CAGTG	4 cut(s)	113, 124, 555, 714
BveI	ACCTGC	4 cut(s)	486, 686, 719, 727
Cfr13I	GGNCC	3 cut(s)	233, 397, 475
CseI	GACGC	1 cut(s)	666
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	2 cut(s)	321, 350
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	4 cut(s)	191, 455, 608, 686
DpnII	GATC	4 cut(s)	189, 453, 606, 684
Eam1104I	CTCTTC	2 cut(s)	214, 240
EarI	CTCTTC	2 cut(s)	214, 240
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	397, 475
EcoO109I	RGGNCCY	2 cut(s)	397, 475
EcoRII	CCWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	298
FaeI	CATG	2 cut(s)	324, 353
FaiI	YATR	5 cut(s)	294, 322, 341, 351, 407
FatI	CATG	2 cut(s)	320, 349
Fnu4HI	GCNGC	4 cut(s)	153, 518, 620, 681
FokI	GGATG	3 cut(s)	199, 239, 647
Fsp4HI	GCNGC	4 cut(s)	153, 518, 620, 681
GluI	GCNGC	4 cut(s)	153, 518, 620, 681
GsaI	CCCAGC	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	235, 619, 628
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	1 cut(s)	666
Hin1I	GRCGYC	1 cut(s)	602
Hin1II	CATG	2 cut(s)	324, 353
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	2 cut(s)	148, 708
Hpy188I	TCNGA	3 cut(s)	310, 327, 645
Hpy188III	TCNNGA	3 cut(s)	39, 395, 443
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	2 cut(s)	177, 326
HpyCH4III	ACNGT	2 cut(s)	119, 333
HpyCH4IV	ACGT	3 cut(s)	24, 576, 602
HpyCH4V	TGCA	9 cut(s)	152, 286, 296, 509, 598, 633, 695, 722, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 625
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	3 cut(s)	24, 576, 602
Hsp92I	GRCGYC	1 cut(s)	602
Hsp92II	CATG	2 cut(s)	324, 353
Kzo9I	GATC	4 cut(s)	189, 453, 606, 684
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	3 cut(s)	164, 529, 692
LweI	GCATC	1 cut(s)	669
MaeII	ACGT	3 cut(s)	24, 576, 602
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	4 cut(s)	191, 455, 608, 686
MboI	GATC	4 cut(s)	189, 453, 606, 684
MboII	GAAGA	5 cut(s)	18, 184, 231, 257, 367
MhlI	GDGCHC	2 cut(s)	113, 437
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	36
Mph1103I	ATGCAT	1 cut(s)	298
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	237
Mva1269I	GAATGC	3 cut(s)	286, 296, 373
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	622
MwoI	GCNNNNNNNGC	2 cut(s)	17, 625
NdeII	GATC	4 cut(s)	189, 453, 606, 684
NlaIII	CATG	2 cut(s)	324, 353
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	709
NsiI	ATGCAT	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	727
PctI	GAATGC	3 cut(s)	286, 296, 373
PkrI	GCNGC	4 cut(s)	154, 519, 621, 682
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	2 cut(s)	397, 475
Psp5II	RGGWCCY	2 cut(s)	397, 475
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	3 cut(s)	233, 397, 475
PspPPI	RGGWCCY	2 cut(s)	397, 475
PstI	CTGCAG	1 cut(s)	730
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	4 cut(s)	153, 518, 620, 681
Sau3AI	GATC	4 cut(s)	189, 453, 606, 684
Sau96I	GGNCC	3 cut(s)	233, 397, 475
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	113, 437
SfaNI	GCATC	1 cut(s)	669
SfcI	CTRYAG	1 cut(s)	726
SfiI	GGCCNNNNNGGCC	1 cut(s)	625
SinI	GGWCC	2 cut(s)	397, 475
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	2 cut(s)	572, 620
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	119, 333
TaiI	ACGT	3 cut(s)	27, 579, 605
TaqI	TCGA	1 cut(s)	605
TasI	AATT	1 cut(s)	378
TauI	GCSGC	1 cut(s)	622
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	4 cut(s)	113, 124, 562, 714
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	3 cut(s)	152, 517, 680
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	2 cut(s)	87, 481
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	4 cut(s)	113, 124, 562, 714
VpaK11BI	GGWCC	2 cut(s)	397, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	672
ZraI	GACGTC	1 cut(s)	603
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.