Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

15352691 .. 15360309

Gene Structure 7619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG174100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAGAAGAGCTTTGGTTGCCAACGTGTTTAATCAGTCCAGACTCCGGTGGCTGCTCAATAAGAGAAACGATGAAGCAGACAATCTTGTGAAGTTCCTTTACAGTCAGTGCTCAACCAGTGAGAATGGTTCGGTAGTGAATGTGAGAAATGCAGCCCAACATTACCCAGCAAATGTGATGAGAAGGATGATCTTCAACATGAGGTATTTTGGCAAAGGAAAAGAGGATGGAGGGCCAGGACTTGAAGAAGAAAGACACATCTCTGCGCTTTTCACAATACTCTTGCATTCGTATGCATTCTGTGTATCCGATTATCTTCCATGGCTGAGACCATTTGACATAGGTGGGCATGAGAAGAAAGTGAGGGATGCTTTGAAAATTATCAAGCTGTATCAGGACCCTATTATAGATGAGAGAGTACGGAAGTGGAGGTGCTCTAATCAGGAAAATAGGATCAAGGAGCCTGTAGAGGAGGACCTGCTTGATGTTTTCATCTCACTCAAAGGTGCAGATGGGCAACGTTTATTGTCAGCTGAAGAAATCAAAGCACAAATCACTGACCTACAACTTGCCACAGTGGATAATCCTTTCAATTCAGCAGAATGGGCTCTTTCAGAAATGCTGAACCAACCTGATATGCTTACAAAAGCACAAGAGGAACTAAATAGGGTAGTGGGAATCCACATGCTTGTTCAAGAATCTCATATCCCTCATCTCCCTTACATAAAGGCTTGTGTAAGAGAATCACTCAGGCTGCATCCAGCTGCACCATTTAATCTCCCCCATGTCTCATGTGCTGATGCCATAGTAGCAGGCTACTTCATCCCAGAGGGTAGTAGTGTTCTTTTGAGTCGTTTAGACCTTGGTCGTAACCCTAAAGTTTGGGAAAACCCCTTTAGATTTGACCCCAAGCGTCATCTAAATGGAGCTGCCAATGAACACGTGGATCTAGGTGAACATGAGCTAAGGTTCATTTCATTTTCTACTGGAAGGAGAGGTTGCCCGGGTGGTACGCTTGGAACAAACATAACTGTGATGCTCCTTGCTAGGCTTCTTCAAGGGTTTACATGGAGCATGCCACCCAAGGTGGATGAGATTGACCTCACTGAGCAGGCTCAATCCCTCTTCAAGCTCAATGCGTTGTATGCGCATGCTAAACCTCGCTTGCCTGCTGCTGTGTACCTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

396

Amino Acids

45.02

Weight (kDa)

7.7

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 372	7.8e-66	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1149
Acc36I	ACCTGC	1 cut(s)	486
AclI	AACGTT	1 cut(s)	520
AclWI	GGATC	2 cut(s)	461, 954
AcuI	CTGAAG	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	943
AfaI	GTAC	3 cut(s)	420, 1012, 1181
AfiI	CCNNNNNNNGG	1 cut(s)	45
AflIII	ACRYGT	2 cut(s)	24, 940
AgsI	TTSAA	7 cut(s)	196, 245, 376, 592, 695, 1058, 1129
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	7 cut(s)	11, 388, 533, 764, 929, 964, 1132
AluI	AGCT	7 cut(s)	11, 388, 533, 764, 929, 964, 1132
Alw21I	GWGCWC	2 cut(s)	113, 437
Alw26I	GTCTC	2 cut(s)	322, 793
AlwI	GGATC	2 cut(s)	461, 954
Ama87I	CYCGRG	1 cut(s)	1003
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	6 cut(s)	52, 152, 754, 764, 929, 1172
AspLEI	GCGC	2 cut(s)	268, 1150
AspS9I	GGNCC	3 cut(s)	233, 397, 475
AsuC2I	CCSGG	2 cut(s)	1004, 1005
AsuHPI	GGTGA	1 cut(s)	965
AvaI	CYCGRG	1 cut(s)	1003
AvaII	GGWCC	2 cut(s)	397, 475
BanII	GRGCYC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BbrPI	CACGTG	1 cut(s)	943
Bbv12I	GWGCWC	2 cut(s)	113, 437
BbvI	GCAGC	6 cut(s)	39, 164, 741, 751, 916, 1159
BccI	CCATC	2 cut(s)	221, 506
BciT130I	CCWGG	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	316
BcnI	CCSGG	2 cut(s)	1004, 1005
BcoDI	GTCTC	2 cut(s)	322, 793
BfaI	CTAG	2 cut(s)	950, 1047
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	6 cut(s)	53, 153, 755, 765, 930, 1173
BlsI	GCNGC	6 cut(s)	54, 154, 756, 766, 931, 1174
Bme1390I	CCNGG	3 cut(s)	237, 1004, 1005
Bme18I	GGWCC	2 cut(s)	397, 475
BmeT110I	CYCGRG	1 cut(s)	1003
BmgT120I	GGNCC	3 cut(s)	233, 397, 475
BmiI	GGNNCC	2 cut(s)	399, 462
BmrFI	CCNGG	3 cut(s)	237, 1004, 1005
BmsI	GCATC	4 cut(s)	358, 766, 790, 1026
BoxI	GACNNNNGTC	1 cut(s)	864
BplI	GAGNNNNNCTC	2 cut(s)	732, 764
Bpu10I	CCTNAGC	1 cut(s)	965
BpuMI	CCSGG	2 cut(s)	1004, 1005
BsaAI	YACGTR	1 cut(s)	943
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	4 cut(s)	320, 862, 1003, 1083
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	117, 991
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	4 cut(s)	320, 862, 1003, 1083
BseGI	GGATG	6 cut(s)	192, 232, 373, 757, 822, 1096
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	317, 763, 1098
BseNI	ACTGG	2 cut(s)	117, 991
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	6 cut(s)	39, 164, 741, 751, 916, 1159
BseYI	CCCAGC	1 cut(s)	166
BsgI	GTGCAG	2 cut(s)	528, 750
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	2 cut(s)	113, 437
BsiHKCI	CYCGRG	1 cut(s)	1003
BsiSI	CCGG	2 cut(s)	46, 1004
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	2 cut(s)	322, 793
BsmI	GAATGC	2 cut(s)	286, 296
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	1003
Bsp1286I	GDGCHC	3 cut(s)	113, 437, 610
Bsp143I	GATC	3 cut(s)	189, 453, 946
Bsp19I	CCATGG	1 cut(s)	320
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	3 cut(s)	318, 762, 1099
BspLI	GGNNCC	2 cut(s)	399, 462
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	461, 954
BspTNI	GGTCTC	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	117, 991
BssECI	CCNNGG	4 cut(s)	320, 862, 1003, 1083
BssMI	GATC	3 cut(s)	189, 453, 946
BssT1I	CCWWGG	3 cut(s)	320, 862, 1083
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	104, 577, 1033
Bst6I	CTCTTC	1 cut(s)	1130
BstBAI	YACGTR	1 cut(s)	943
BstC8I	GCNNGC	6 cut(s)	814, 1076, 1113, 1152, 1166, 1170
BstDEI	CTNAG	4 cut(s)	326, 749, 965, 1107
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	6 cut(s)	192, 232, 373, 757, 822, 1096
BstHHI	GCGC	2 cut(s)	268, 1150
BstKTI	GATC	3 cut(s)	192, 456, 949
BstMAI	GTCTC	2 cut(s)	322, 793
BstMBI	GATC	3 cut(s)	189, 453, 946
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 605, 809, 1145
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	3 cut(s)	688, 1078, 1154
BstPAI	GACNNNNGTC	1 cut(s)	864
BstSCI	CCNGG	3 cut(s)	235, 1002, 1003
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	6 cut(s)	39, 164, 741, 751, 916, 1159
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	6 cut(s)	192, 232, 373, 757, 822, 1096
BtsIMutI	CAGTG	5 cut(s)	113, 124, 555, 582, 1104
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	6 cut(s)	814, 1076, 1113, 1152, 1166, 1170
CfoI	GCGC	2 cut(s)	268, 1150
Cfr13I	GGNCC	3 cut(s)	233, 397, 475
Cfr9I	CCCGGG	1 cut(s)	1003
CseI	GACGC	1 cut(s)	902
Csp6I	GTAC	3 cut(s)	419, 1011, 1180
CviQI	GTAC	3 cut(s)	419, 1011, 1180
DdeI	CTNAG	4 cut(s)	326, 749, 965, 1107
DpnI	GATC	3 cut(s)	191, 455, 948
DpnII	GATC	3 cut(s)	189, 453, 946
Eam1104I	CTCTTC	1 cut(s)	1130
EarI	CTCTTC	1 cut(s)	1130
Eco130I	CCWWGG	3 cut(s)	320, 862, 1083
Eco24I	GRGCYC	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	397, 475
Eco57I	CTGAAG	1 cut(s)	555
Eco72I	CACGTG	1 cut(s)	943
Eco88I	CYCGRG	1 cut(s)	1003
EcoO109I	RGGNCCY	2 cut(s)	397, 475
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	3 cut(s)	320, 862, 1083
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	3 cut(s)	320, 862, 1083
Fnu4HI	GCNGC	6 cut(s)	53, 153, 755, 765, 930, 1173
FokI	GGATG	6 cut(s)	199, 239, 380, 744, 809, 1103
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	6 cut(s)	53, 153, 755, 765, 930, 1173
FspAI	RTGCGCAY	1 cut(s)	1149
FspBI	CTAG	2 cut(s)	950, 1047
FspI	TGCGCA	1 cut(s)	1149
GlaI	GCGC	2 cut(s)	267, 1149
GluI	GCNGC	6 cut(s)	53, 153, 755, 765, 930, 1173
GsaI	CCCAGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	2 cut(s)	46, 1004
HgaI	GACGC	1 cut(s)	902
HhaI	GCGC	2 cut(s)	268, 1150
Hin6I	GCGC	2 cut(s)	266, 1148
HinP1I	GCGC	2 cut(s)	266, 1148
HinfI	GANTC	5 cut(s)	42, 678, 698, 743, 850
HpaII	CCGG	2 cut(s)	46, 1004
HphI	GGTGA	1 cut(s)	965
Hpy166II	GTNNAC	3 cut(s)	956, 1065, 1180
Hpy188I	TCNGA	2 cut(s)	310, 616
Hpy188III	TCNNGA	4 cut(s)	39, 395, 443, 695
Hpy8I	GTNNAC	3 cut(s)	956, 1065, 1180
HpyAV	CCTTC	2 cut(s)	177, 984
HpyCH4III	ACNGT	3 cut(s)	104, 577, 1033
HpyCH4IV	ACGT	3 cut(s)	24, 520, 942
HpyCH4V	TGCA	6 cut(s)	152, 286, 296, 509, 757, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 605, 809, 1145
HpyF3I	CTNAG	4 cut(s)	326, 749, 965, 1107
HpySE526I	ACGT	3 cut(s)	24, 520, 942
HspAI	GCGC	2 cut(s)	266, 1148
Kzo9I	GATC	3 cut(s)	189, 453, 946
LmnI	GCTCC	4 cut(s)	460, 926, 1044, 1071
Lsp1109I	GCAGC	6 cut(s)	39, 164, 741, 751, 916, 1159
LweI	GCATC	4 cut(s)	358, 766, 790, 1026
MaeI	CTAG	2 cut(s)	950, 1047
MaeII	ACGT	3 cut(s)	24, 520, 942
MaeIII	GTNAC	1 cut(s)	869
MalI	GATC	3 cut(s)	191, 455, 948
MboI	GATC	3 cut(s)	189, 453, 946
MboII	GAAGA	9 cut(s)	18, 184, 257, 260, 308, 367, 548, 1046, 1117
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	3 cut(s)	113, 437, 610
MluCI	AATT	3 cut(s)	378, 592, 1185
MlyI	GAGTC	2 cut(s)	36, 859
Mph1103I	ATGCAT	1 cut(s)	298
MseI	TTAA	2 cut(s)	30, 774
MslI	CAYNNNNRTG	3 cut(s)	291, 921, 1031
MspA1I	CMGCKG	2 cut(s)	533, 764
MspI	CCGG	2 cut(s)	46, 1004
MspR9I	CCNGG	3 cut(s)	237, 1004, 1005
Mva1269I	GAATGC	2 cut(s)	286, 296
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	17, 605, 809, 1145
NciI	CCSGG	2 cut(s)	1004, 1005
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	3 cut(s)	189, 453, 946
NlaIV	GGNNCC	2 cut(s)	399, 462
NsbI	TGCGCA	1 cut(s)	1149
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	3 cut(s)	688, 1078, 1154
PaeI	GCATGC	2 cut(s)	1078, 1154
PctI	GAATGC	2 cut(s)	286, 296
PfeI	GAWTC	3 cut(s)	678, 698, 743
PkrI	GCNGC	6 cut(s)	54, 154, 756, 766, 931, 1174
PleI	GAGTC	2 cut(s)	36, 858
PmaCI	CACGTG	1 cut(s)	943
PmlI	CACGTG	1 cut(s)	943
PpsI	GAGTC	2 cut(s)	36, 858
Ppu21I	YACGTR	1 cut(s)	943
PpuMI	RGGWCCY	2 cut(s)	397, 475
PshAI	GACNNNNGTC	1 cut(s)	864
Psp1406I	AACGTT	1 cut(s)	520
Psp5II	RGGWCCY	2 cut(s)	397, 475
Psp6I	CCWGG	1 cut(s)	235
PspCI	CACGTG	1 cut(s)	943
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	399, 462
PspPI	GGNCC	3 cut(s)	233, 397, 475
PspPPI	RGGWCCY	2 cut(s)	397, 475
PsuI	RGATCY	1 cut(s)	946
PvuII	CAGCTG	2 cut(s)	533, 764
RsaI	GTAC	3 cut(s)	420, 1012, 1181
RsaNI	GTAC	3 cut(s)	419, 1011, 1180
RseI	CAYNNNNRTG	3 cut(s)	291, 921, 1031
SaqAI	TTAA	2 cut(s)	30, 774
SatI	GCNGC	6 cut(s)	53, 153, 755, 765, 930, 1173
Sau3AI	GATC	3 cut(s)	189, 453, 946
Sau96I	GGNCC	3 cut(s)	233, 397, 475
SchI	GAGTC	2 cut(s)	36, 859
ScrFI	CCNGG	3 cut(s)	237, 1004, 1005
SduI	GDGCHC	3 cut(s)	113, 437, 610
SfaNI	GCATC	4 cut(s)	358, 766, 790, 1026
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	397, 475
SmaI	CCCGGG	1 cut(s)	1005
SmiMI	CAYNNNNRTG	3 cut(s)	291, 921, 1031
SphI	GCATGC	2 cut(s)	1078, 1154
Sse9I	AATT	3 cut(s)	378, 592, 1185
SspMI	CTAG	2 cut(s)	950, 1047
StyD4I	CCNGG	3 cut(s)	235, 1002, 1003
StyI	CCWWGG	3 cut(s)	320, 862, 1083
TaaI	ACNGT	3 cut(s)	104, 577, 1033
TaiI	ACGT	3 cut(s)	27, 523, 945
TasI	AATT	3 cut(s)	378, 592, 1185
TfiI	GAWTC	3 cut(s)	678, 698, 743
Tru1I	TTAA	2 cut(s)	30, 774
Tru9I	TTAA	2 cut(s)	30, 774
TscAI	CASTG	5 cut(s)	113, 124, 562, 582, 1111
TseI	GCWGC	6 cut(s)	52, 152, 754, 764, 929, 1172
TspDTI	ATGAA	6 cut(s)	87, 481, 811, 951, 961, 966
TspGWI	ACGGA	1 cut(s)	436
TspMI	CCCGGG	1 cut(s)	1003
TspRI	CASTG	5 cut(s)	113, 124, 562, 582, 1111
VpaK11BI	GGWCC	2 cut(s)	397, 475
XceI	RCATGY	3 cut(s)	688, 1078, 1154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XmaI	CCCGGG	1 cut(s)	1003
XspI	CTAG	2 cut(s)	950, 1047
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.