Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

17870277 .. 17871318

Gene Structure 1042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG200900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCCCCTCTCCCTCCAGGACCAAGCCCATGGCCGATCATTGGGTGTCTGCCAGAGATGTGGAGGAACAGACCAGCATATAAATGGATACATGACCTTCTGAAACAGCTCAACACTGATATTGCCTGTGTACGATTGGGAAATGTTCATGTGATCGTAGTCAGATCACCTGAAATTGCAAGAGAATTTTTGAAGAAACACGACGCAGTTTTCGCATCACGACCCATTACTATGGCTACTAACATCTTAAGTAGTGGGTACTTGGCAACAGCCGTTGTACCTTTGGGAGAGCAGTGGAAGAAAATGAGAAGAGCTTTGGTTGCCAACGTGTTTAATCAGTCCAGACTCCGGTGGCTACTCAATAAGAGAAACGATGAAGCAGACAATCTTGTGAAGTTCCTTTACAGTCAGTGCTCAACCAGTGAGAATGGTTCGGTGGTGAATGTGAGAAATGCAGCCCAACATTACCCAGCAAATGTGATGAGAAGGATGATCTTCAACATGAGGTATTTTGGCAAAGGAAGAGAGGATGGAGGGCCAGGACTTGAAGAAGAAAGACACATCTCTGCGCTTTTCACAATACTCTTGCATTCGTATGCATTCTGTGTATCCGATTACCTTCCATGGCTAAGACCATTTGACATAGGTGGGCATGAGAAGAAAGTGAGGGATGCTTTGAAAATTATCAAGCAGTATCAGGACCCTATTATAGATGAGAGAGTACGGAAGTGGAGGTGCTCTAATCAGGAAAATAGGATCAAGGAGCCTGTAGAGGAGGACCTGCTTGATGTTTTCATCTCACTCAAAGGTGCAGATGGGCAGCGTTTATTGTCAGTTGAAGAAATCAAAGCACAAATCACTGTAAGATATTCTTATATAGATCCACAACTGTTAAGCTCAACTACCTTGAAAGTGATAATTAACTGCATTTGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

312

Amino Acids

35.89

Weight (kDa)

9.27

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	5 - 287	7.7e-28	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	789
AclWI	GGATC	2 cut(s)	764, 875
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	4 cut(s)	132, 260, 279, 723
AfiI	CCNNNNNNNGG	2 cut(s)	41, 348
AflII	CTTAAG	1 cut(s)	247
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	6 cut(s)	193, 499, 548, 679, 839, 910
AjnI	CCWGG	2 cut(s)	16, 538
AluBI	AGCT	3 cut(s)	109, 314, 897
AluI	AGCT	3 cut(s)	109, 314, 897
Alw21I	GWGCWC	2 cut(s)	416, 740
AlwI	GGATC	2 cut(s)	764, 875
AoxI	GGCC	2 cut(s)	32, 536
ApeKI	GCWGC	2 cut(s)	455, 820
ApoI	RAATTY	1 cut(s)	185
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	4 cut(s)	20, 536, 700, 778
AsuHPI	GGTGA	2 cut(s)	159, 451
AvaII	GGWCC	3 cut(s)	20, 700, 778
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
Bbv12I	GWGCWC	2 cut(s)	416, 740
BbvI	GCAGC	2 cut(s)	467, 832
BccI	CCATC	2 cut(s)	524, 809
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	2 cut(s)	18, 540
BciVI	GTATCC	2 cut(s)	81, 619
BfmI	CTRYAG	1 cut(s)	768
BfrI	CTTAAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	789
BfuI	GTATCC	2 cut(s)	81, 619
BisI	GCNGC	2 cut(s)	456, 821
BlsI	GCNGC	2 cut(s)	457, 822
Bme1390I	CCNGG	2 cut(s)	18, 540
Bme18I	GGWCC	3 cut(s)	20, 700, 778
BmgT120I	GGNCC	4 cut(s)	20, 536, 700, 778
BmiI	GGNNCC	2 cut(s)	702, 765
BmrFI	CCNGG	2 cut(s)	18, 540
BmsI	GCATC	2 cut(s)	224, 661
BsaJI	CCNNGG	2 cut(s)	29, 623
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 348
Bse1I	ACTGG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	18, 540
BseDI	CCNNGG	2 cut(s)	29, 623
BseGI	GGATG	3 cut(s)	495, 535, 676
BseLI	CCNNNNNNNGG	2 cut(s)	41, 348
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	2 cut(s)	467, 832
BseYI	CCCAGC	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	2 cut(s)	34, 538
BsiHKAI	GWGCWC	2 cut(s)	416, 740
BsiSI	CCGG	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	41, 348
BsmI	GAATGC	2 cut(s)	589, 599
BsnI	GGCC	2 cut(s)	34, 538
Bsp1286I	GDGCHC	2 cut(s)	416, 740
Bsp143I	GATC	6 cut(s)	36, 153, 164, 492, 756, 880
Bsp19I	CCATGG	2 cut(s)	29, 623
BspANI	GGCC	2 cut(s)	34, 538
BspLI	GGNNCC	2 cut(s)	702, 765
BspMI	ACCTGC	1 cut(s)	789
BspPI	GGATC	2 cut(s)	764, 875
BspQI	GCTCTTC	1 cut(s)	304
BspTI	CTTAAG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	29, 623
BssMI	GATC	6 cut(s)	36, 153, 164, 492, 756, 880
BssT1I	CCWWGG	2 cut(s)	29, 623
Bst2UI	CCWGG	2 cut(s)	18, 540
Bst4CI	ACNGT	3 cut(s)	407, 862, 891
Bst6I	CTCTTC	2 cut(s)	304, 517
BstAFI	CTTAAG	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	629
BstDSI	CCRYGG	2 cut(s)	29, 623
BstF5I	GGATG	3 cut(s)	495, 535, 676
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	6 cut(s)	39, 156, 167, 495, 759, 883
BstMBI	GATC	6 cut(s)	36, 153, 164, 492, 756, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 320
BstNI	CCWGG	2 cut(s)	18, 540
BstNSI	RCATGY	1 cut(s)	937
BstSCI	CCNGG	2 cut(s)	16, 538
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	2 cut(s)	467, 832
BstX2I	RGATCY	1 cut(s)	880
BstXI	CCANNNNNNTGG	3 cut(s)	30, 60, 232
BstYI	RGATCY	1 cut(s)	880
BsuI	GTATCC	2 cut(s)	81, 619
BsuRI	GGCC	2 cut(s)	34, 538
BtgI	CCRYGG	2 cut(s)	29, 623
BtsCI	GGATG	3 cut(s)	495, 535, 676
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	5 cut(s)	114, 299, 416, 427, 858
BveI	ACCTGC	1 cut(s)	789
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	4 cut(s)	20, 536, 700, 778
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	4 cut(s)	131, 259, 278, 722
CviAII	CATG	7 cut(s)	30, 92, 149, 502, 624, 653, 934
CviQI	GTAC	4 cut(s)	131, 259, 278, 722
DdeI	CTNAG	1 cut(s)	629
DpnI	GATC	6 cut(s)	38, 155, 166, 494, 758, 882
DpnII	GATC	6 cut(s)	36, 153, 164, 492, 756, 880
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	2 cut(s)	304, 517
EarI	CTCTTC	2 cut(s)	304, 517
Eco130I	CCWWGG	2 cut(s)	29, 623
Eco47I	GGWCC	3 cut(s)	20, 700, 778
EcoO109I	RGGNCCY	2 cut(s)	700, 778
EcoRII	CCWGG	2 cut(s)	16, 538
EcoT14I	CCWWGG	2 cut(s)	29, 623
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	2 cut(s)	29, 623
FaeI	CATG	7 cut(s)	33, 95, 152, 505, 627, 656, 937
FalI	AAGNNNNNCTT	2 cut(s)	856, 888
FatI	CATG	7 cut(s)	29, 91, 148, 501, 623, 652, 933
Fnu4HI	GCNGC	2 cut(s)	456, 821
FokI	GGATG	3 cut(s)	502, 542, 683
Fsp4HI	GCNGC	2 cut(s)	456, 821
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	2 cut(s)	456, 821
GsaI	CCCAGC	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	34, 538
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	7 cut(s)	33, 95, 152, 505, 627, 656, 937
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	2 cut(s)	159, 451
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	3 cut(s)	102, 164, 613
Hpy188III	TCNNGA	4 cut(s)	219, 342, 698, 746
Hpy8I	GTNNAC	1 cut(s)	131
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	107, 480, 629
HpyCH4III	ACNGT	3 cut(s)	407, 862, 891
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	7 cut(s)	179, 455, 589, 599, 812, 927, 933
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 320
HpyF3I	CTNAG	1 cut(s)	629
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	7 cut(s)	33, 95, 152, 505, 627, 656, 937
HspAI	GCGC	1 cut(s)	569
Kzo9I	GATC	6 cut(s)	36, 153, 164, 492, 756, 880
LguI	GCTCTTC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	763
Lsp1109I	GCAGC	2 cut(s)	467, 832
LweI	GCATC	2 cut(s)	224, 661
MaeII	ACGT	1 cut(s)	327
MalI	GATC	6 cut(s)	38, 155, 166, 494, 758, 882
MboI	GATC	6 cut(s)	36, 153, 164, 492, 756, 880
MboII	GAAGA	9 cut(s)	205, 310, 321, 487, 534, 560, 563, 670, 851
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	2 cut(s)	416, 740
MluCI	AATT	4 cut(s)	174, 185, 681, 918
MlyI	GAGTC	1 cut(s)	339
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	4 cut(s)	248, 333, 893, 921
MslI	CAYNNNNRTG	4 cut(s)	82, 230, 594, 932
MspCI	CTTAAG	1 cut(s)	247
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	2 cut(s)	18, 540
Mva1269I	GAATGC	2 cut(s)	589, 599
MvaI	CCWGG	2 cut(s)	18, 540
MwoI	GCNNNNNNNGC	2 cut(s)	212, 320
NcoI	CCATGG	2 cut(s)	29, 623
NdeII	GATC	6 cut(s)	36, 153, 164, 492, 756, 880
NlaIII	CATG	7 cut(s)	33, 95, 152, 505, 627, 656, 937
NlaIV	GGNNCC	2 cut(s)	702, 765
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	937
PciSI	GCTCTTC	1 cut(s)	304
PctI	GAATGC	2 cut(s)	589, 599
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	457, 822
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PpuMI	RGGWCCY	2 cut(s)	700, 778
Psp5II	RGGWCCY	2 cut(s)	700, 778
Psp6I	CCWGG	2 cut(s)	16, 538
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	2 cut(s)	16, 538
PspN4I	GGNNCC	2 cut(s)	702, 765
PspPI	GGNCC	4 cut(s)	20, 536, 700, 778
PspPPI	RGGWCCY	2 cut(s)	700, 778
PsuI	RGATCY	1 cut(s)	880
RsaI	GTAC	4 cut(s)	132, 260, 279, 723
RsaNI	GTAC	4 cut(s)	131, 259, 278, 722
RseI	CAYNNNNRTG	4 cut(s)	82, 230, 594, 932
SapI	GCTCTTC	1 cut(s)	304
SaqAI	TTAA	4 cut(s)	248, 333, 893, 921
SatI	GCNGC	2 cut(s)	456, 821
Sau3AI	GATC	6 cut(s)	36, 153, 164, 492, 756, 880
Sau96I	GGNCC	4 cut(s)	20, 536, 700, 778
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	2 cut(s)	18, 540
SduI	GDGCHC	2 cut(s)	416, 740
SfaNI	GCATC	2 cut(s)	224, 661
SfcI	CTRYAG	1 cut(s)	768
SinI	GGWCC	3 cut(s)	20, 700, 778
SmiMI	CAYNNNNRTG	4 cut(s)	82, 230, 594, 932
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	4 cut(s)	174, 185, 681, 918
StyD4I	CCNGG	2 cut(s)	16, 538
StyI	CCWWGG	2 cut(s)	29, 623
TaaI	ACNGT	3 cut(s)	407, 862, 891
TaiI	ACGT	1 cut(s)	330
TasI	AATT	4 cut(s)	174, 185, 681, 918
Tru1I	TTAA	4 cut(s)	248, 333, 893, 921
Tru9I	TTAA	4 cut(s)	248, 333, 893, 921
TscAI	CASTG	5 cut(s)	121, 299, 416, 427, 865
TseI	GCWGC	2 cut(s)	455, 820
TspDTI	ATGAA	3 cut(s)	137, 390, 784
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	5 cut(s)	121, 299, 416, 427, 865
Vha464I	CTTAAG	1 cut(s)	247
VpaK11BI	GGWCC	3 cut(s)	20, 700, 778
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.