Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

33431872 .. 33432657

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTACTCACCTCTTCAGTACTGGATACTTGACAGTAGGTGTTACACCTATGGGAGAACAATGGAAGAAAATGAGAAGGATTTTGATTGCCGAAGTGTTTAATCAGTCCAGACTCCGGTGGCTACTTGATAAGAGAAACGATGAAGCGGACAATCTTGTGAAGTTTCTCTACAATCAGTGCTCAAACAGTGAGAATGGTTCGGTGGTGAATGTGAGAATTGCGGCCCAACATTACTCAACAAATGTGATGAGAAGAAAGTTCTTCAACATGAGGTACTTTGGCAAAGGGAGAGAGGATGGAGGGCCAAGACTTGAAGAAGAATTACTCGTCTCTACGCTTTTCACATTGGTCTTGCATACGTATGCATTCTGTGTATCCGATTATCTTCCATGGTTGAGACCGTTTGACATAGGTAGGCATGAGAAAAAGGTCAAGGATGCTTTAAAAATTATCAAGCAGTATCAGGACCCTGTTATAGACGATAGAGTACGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

166

Amino Acids

19.55

Weight (kDa)

9.59

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	18 - 163	1.7e-11	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 224
AfaI	GTAC	3 cut(s)	22, 278, 492
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	268, 317
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	337, 394
AoxI	GGCC	2 cut(s)	225, 305
AspS9I	GGNCC	3 cut(s)	226, 305, 469
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	469
BarI	GAAGNNNNNNTAC	4 cut(s)	155, 187, 309, 341
Bbv12I	GWGCWC	1 cut(s)	185
BccI	CCATC	1 cut(s)	293
BciVI	GTATCC	2 cut(s)	20, 388
BcoDI	GTCTC	2 cut(s)	337, 394
BfuI	GTATCC	2 cut(s)	20, 388
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	3 cut(s)	226, 305, 469
BmiI	GGNNCC	1 cut(s)	471
BmsI	GCATC	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	304, 445
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	227, 307
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	337, 394
BsmBI	CGTCTC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	227, 307
Bso31I	GGTCTC	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp19I	CCATGG	1 cut(s)	392
BspACI	CCGC	2 cut(s)	149, 224
BspANI	GGCC	2 cut(s)	227, 307
BspLI	GGNNCC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	392
Bst4CI	ACNGT	3 cut(s)	37, 191, 405
Bst6I	CTCTTC	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	304, 445
BstMAI	GTCTC	2 cut(s)	337, 394
BstSNI	TACGTA	1 cut(s)	363
BsuI	GTATCC	2 cut(s)	20, 388
BsuRI	GGCC	2 cut(s)	227, 307
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	304, 445
BtsIMutI	CAGTG	2 cut(s)	185, 196
Cfr13I	GGNCC	3 cut(s)	226, 305, 469
Csp6I	GTAC	3 cut(s)	21, 277, 491
CviAII	CATG	3 cut(s)	271, 393, 422
CviJI	RGCY	4 cut(s)	5, 124, 227, 307
CviKI_1	RGCY	4 cut(s)	5, 124, 227, 307
CviQI	GTAC	3 cut(s)	21, 277, 491
DraI	TTTAAA	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	274, 396, 425
FaiI	YATR	8 cut(s)	53, 272, 360, 366, 394, 413, 423, 479
FatI	CATG	3 cut(s)	270, 392, 421
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	311, 452
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	227, 307
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	3 cut(s)	274, 396, 425
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	2 cut(s)	111, 467
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	3 cut(s)	37, 191, 405
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	2 cut(s)	358, 368
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	3 cut(s)	274, 396, 425
LpnPI	CCDG	5 cut(s)	9, 124, 131, 452, 486
LweI	GCATC	1 cut(s)	430
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	43
MboII	GAAGA	7 cut(s)	7, 79, 256, 267, 329, 332, 380
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	3 cut(s)	219, 323, 450
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	23, 267, 289, 296
Mph1103I	ATGCAT	1 cut(s)	370
MseI	TTAA	2 cut(s)	102, 446
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	392
NlaIII	CATG	3 cut(s)	274, 396, 425
NlaIV	GGNNCC	1 cut(s)	471
NsiI	ATGCAT	1 cut(s)	370
PctI	GAATGC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Ppu21I	YACGTR	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	469
Psp5II	RGGWCCY	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	3 cut(s)	226, 305, 469
PspPPI	RGGWCCY	1 cut(s)	469
RsaI	GTAC	3 cut(s)	22, 278, 492
RsaNI	GTAC	3 cut(s)	21, 277, 491
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	102, 446
SatI	GCNGC	1 cut(s)	225
Sau96I	GGNCC	3 cut(s)	226, 305, 469
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	7 cut(s)	15, 43, 52, 278, 365, 418, 435
SfaNI	GCATC	1 cut(s)	430
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	363
SnaBI	TACGTA	1 cut(s)	363
Sse9I	AATT	3 cut(s)	219, 323, 450
SsiI	CCGC	2 cut(s)	149, 224
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	3 cut(s)	37, 191, 405
TaiI	ACGT	1 cut(s)	365
TasI	AATT	3 cut(s)	219, 323, 450
TatI	WGTACW	1 cut(s)	20
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	102, 446
Tru9I	TTAA	2 cut(s)	102, 446
TscAI	CASTG	2 cut(s)	185, 196
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	185, 196
VpaK11BI	GGWCC	1 cut(s)	469
ZrmI	AGTACT	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.