Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

17863140 .. 17863712

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG200700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTGAACCAACCTGATATGCTTACAAAAGCACAAGAGGAACTAAATAGGGTAGTGGGAATCCACATGCTTGTTCAAGAATCTCATATCCCTCATCTCCCTTACATAAAGGCTTGTGTAAGAGAATCGCTCAGGCTGCATCCAGCTGCACCATTTAATCTGCCCCATGTCTCATGTGCTGATGCCATAGTAGCAGGCTACTTCATCCCAGAGGGTAGTAGTGTTCTTTTGAGTCGTTTAGACCTTGGTCGTAACCCCAAAGTCTGGGAAAACCCCTTTAGATTTGACCCCAAGCGTCATCTAAATGGACCTGCCAATGAACACGTGGATCTAGGTGAACATGAGCTAAGGTTCATTTCATTTTCTACTGGAAGGAGAGGTTGCCCGGGTGGTACGCTTGGAACAAACATAACTGTGATGCTCCTTGCTAGGCTTCTTCAAGGGTTTACATGGAGCATGCCACCCAAGGTGGATGAGATTGACCTCACTGAGCAGGCTCAATCCCTCTTCAAGCTCAATGCATTGTATGCGCATGCTAAACCTCGCTTGCCTGCTGCTGTGTACCTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

190

Amino Acids

21.25

Weight (kDa)

7.83

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 166	1e-43	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	264
AclWI	GGATC	1 cut(s)	336
AcvI	CACGTG	1 cut(s)	325
AfaI	GTAC	2 cut(s)	394, 563
AfiI	CCNNNNNNNGG	1 cut(s)	264
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	77, 440, 511
AluBI	AGCT	3 cut(s)	146, 346, 514
AluI	AGCT	3 cut(s)	146, 346, 514
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	385
ApeKI	GCWGC	3 cut(s)	136, 146, 554
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	2 cut(s)	386, 387
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	308
BbrPI	CACGTG	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	123, 133, 541
BcnI	CCSGG	2 cut(s)	386, 387
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	332, 429
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	3 cut(s)	137, 147, 555
BlsI	GCNGC	3 cut(s)	138, 148, 556
Bme1390I	CCNGG	2 cut(s)	386, 387
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	308
BmrFI	CCNGG	2 cut(s)	386, 387
BmsI	GCATC	3 cut(s)	148, 172, 408
BoxI	GACNNNNGTC	1 cut(s)	246
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
Bpu10I	CCTNAGC	2 cut(s)	131, 347
BpuMI	CCSGG	2 cut(s)	386, 387
BsaAI	YACGTR	1 cut(s)	325
BsaJI	CCNNGG	3 cut(s)	244, 385, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse1I	ACTGG	1 cut(s)	373
BseDI	CCNNGG	3 cut(s)	244, 385, 465
BseGI	GGATG	3 cut(s)	139, 204, 478
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	145, 480
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	3 cut(s)	123, 133, 541
BsgI	GTGCAG	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	144, 481
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	244, 385, 465
BssMI	GATC	1 cut(s)	328
BssT1I	CCWWGG	2 cut(s)	244, 465
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	6 cut(s)	196, 458, 495, 534, 548, 552
BstDEI	CTNAG	3 cut(s)	131, 347, 489
BstF5I	GGATG	3 cut(s)	139, 204, 478
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 191, 527
BstNSI	RCATGY	3 cut(s)	70, 460, 536
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	384, 385
BstV1I	GCAGC	3 cut(s)	123, 133, 541
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	139, 204, 478
BtsIMutI	CAGTG	1 cut(s)	486
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	6 cut(s)	196, 458, 495, 534, 548, 552
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	308
Cfr9I	CCCGGG	1 cut(s)	385
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	393, 562
CviAII	CATG	7 cut(s)	67, 167, 174, 341, 450, 457, 533
CviJI	RGCY	8 cut(s)	113, 136, 146, 198, 346, 433, 497, 514
CviKI_1	RGCY	8 cut(s)	113, 136, 146, 198, 346, 433, 497, 514
CviQI	GTAC	2 cut(s)	393, 562
DdeI	CTNAG	3 cut(s)	131, 347, 489
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
Eco130I	CCWWGG	2 cut(s)	244, 465
Eco47I	GGWCC	1 cut(s)	308
Eco72I	CACGTG	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	244, 465
EcoT22I	ATGCAT	1 cut(s)	523
ErhI	CCWWGG	2 cut(s)	244, 465
FaeI	CATG	7 cut(s)	70, 170, 177, 344, 453, 460, 536
FatI	CATG	7 cut(s)	66, 166, 173, 340, 449, 456, 532
Fnu4HI	GCNGC	3 cut(s)	137, 147, 555
FokI	GGATG	3 cut(s)	126, 191, 485
Fsp4HI	GCNGC	3 cut(s)	137, 147, 555
FspAI	RTGCGCAY	1 cut(s)	531
FspBI	CTAG	2 cut(s)	332, 429
FspI	TGCGCA	1 cut(s)	531
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	3 cut(s)	137, 147, 555
HapII	CCGG	1 cut(s)	386
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	7 cut(s)	70, 170, 177, 344, 453, 460, 536
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	4 cut(s)	60, 80, 125, 232
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	3 cut(s)	338, 447, 562
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	3 cut(s)	338, 447, 562
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	139, 149, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 191, 527
HpyF3I	CTNAG	3 cut(s)	131, 347, 489
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	7 cut(s)	70, 170, 177, 344, 453, 460, 536
HspAI	GCGC	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	426, 453
Lsp1109I	GCAGC	3 cut(s)	123, 133, 541
LweI	GCATC	3 cut(s)	148, 172, 408
MaeI	CTAG	2 cut(s)	332, 429
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	428, 499
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	31, 102, 205, 371, 494, 515, 552
Mph1103I	ATGCAT	1 cut(s)	523
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	303, 413
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	386, 387
MwoI	GCNNNNNNNGC	3 cut(s)	136, 191, 527
NciI	CCSGG	2 cut(s)	386, 387
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	7 cut(s)	70, 170, 177, 344, 453, 460, 536
NsbI	TGCGCA	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	3 cut(s)	70, 460, 536
PaeI	GCATGC	2 cut(s)	460, 536
PfeI	GAWTC	3 cut(s)	60, 80, 125
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	138, 148, 556
PleI	GAGTC	1 cut(s)	240
PmaCI	CACGTG	1 cut(s)	325
PmlI	CACGTG	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	240
Ppu21I	YACGTR	1 cut(s)	325
PshAI	GACNNNNGTC	1 cut(s)	246
PspCI	CACGTG	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	394, 563
RsaNI	GTAC	2 cut(s)	393, 562
RseI	CAYNNNNRTG	2 cut(s)	303, 413
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	137, 147, 555
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	386, 387
SfaNI	GCATC	3 cut(s)	148, 172, 408
SinI	GGWCC	1 cut(s)	308
SmaI	CCCGGG	1 cut(s)	387
SmiMI	CAYNNNNRTG	2 cut(s)	303, 413
SphI	GCATGC	2 cut(s)	460, 536
Sse9I	AATT	1 cut(s)	567
SspMI	CTAG	2 cut(s)	332, 429
StyD4I	CCNGG	2 cut(s)	384, 385
StyI	CCWWGG	2 cut(s)	244, 465
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	327
TasI	AATT	1 cut(s)	567
TfiI	GAWTC	3 cut(s)	60, 80, 125
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	3 cut(s)	136, 146, 554
TspDTI	ATGAA	4 cut(s)	193, 333, 343, 348
TspMI	CCCGGG	1 cut(s)	385
TspRI	CASTG	1 cut(s)	493
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	308
XceI	RCATGY	3 cut(s)	70, 460, 536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmaI	CCCGGG	1 cut(s)	385
XspI	CTAG	2 cut(s)	332, 429
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.