Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

8186107 .. 8193640

Gene Structure 7534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG102500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGACTCCTTACCGGACAGCTGTTGTACCTTGGGGAGAGCAATGGAAGAAAATGAGAAGAGTTTTGGTTGCCAACGTGTTGAATCAGTCCAGACTCCGGTGGCTACTCGATAAGAGAAATGATGAAGCGGACACTCTTGTGAGGTTTCTCTATAGTCAGTGCTCGAACAGCGAGAATGGGGTGGTGAATGTGAGAAATGCAACCCAACATTACTCAGCGAGTGTGATGAGAAGGATGATCTTCAACACGAGGTACTTTGGCAATGGAAGAGAGGATGGAGGGCCAGGACTTGAAGAAGAAAGACACATCTCTGCGCTTTTCACAATACTCTTGCATCTCTATGCATTCTATGTATCCGATTACCTTCCATGGCTGAGACCGTTTGACATAGGTGGGCATGAGAAAAAGGTGAGGGATGCTTTGAAAATTATCAAGCAGTATCAAGACCCTATTATAGATGAGAGAGTACGAAAGTGGAGGTGCTCTAATCAGGAAAATAGGATCAAGGAGCCTGTAGAGGAGGACTTGCTCGATGTTTTCATCTCTCTCAAAGGTGCAGATGGGCAACCTTTATTATCTGTTGAAGAAATCAAAGCACAAATCACCGAACTACAGCTTGCCACGGTGGATAATCCCTCCAATATAGCAGAGTGGGCTCTATCAGAAATGCTGAACCAACCTGAGATGCTTACAAAAGCACAAGAGGAACTAAATAGGATAGTGGGAATCAACATGCTTGTTCAAGAATCTCATATCCCGCATCTCCCTTACATAACGGCTTGTGCAAGAGAATCGCTCAGGCTGCATCCAGTTGCGCCATTCAATCTTCCCCATTTTTCCACTGCTGATGCTATAGTAGCAGGCTACTTCATCCCAAAGGGCAGTAGTGTTCTTCTAAGTCGTTTAGGCCTCGGACGCAACCCCAAAGTCTGGGAAAACCCGTTGAAATTCGACCCCGAGCGTCATCTAAGTGGAGATGCCAGTCAACAAGTGGAGCTGGAAGAACGTGATCTGAGGTTCATTTCTTTTACTACTGGAAGGAGAGGTTGCATGGGTGGTACGCTTGGGACTACCATAACTGTGATGCTCCTTGCTAGGCTTCTTCAAGGGTTTACATGGAGCATGCCACCCAAGGTGGATAAGATTGACCTCACTGAGGCTCAAACCCTTTTCAAGCTCAATCCCTTGTATGCTCATGCTAAACCTCGCTTGCCTGCTACTATGTACCTGATATCTCTGGCCATACCAGAGGCTAGCTTCGAACATTTTGCATGTATGTATGGGGTTGAGTCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

432

Amino Acids

49.3

Weight (kDa)

6.85

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	11 - 392	8.4e-68	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	930
AciI	CCGC	2 cut(s)	128, 758
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	1239
AcsI	RAATTY	1 cut(s)	947
AfaI	GTAC	5 cut(s)	27, 254, 468, 1060, 1226
AfiI	CCNNNNNNNGG	3 cut(s)	96, 930, 1156
AflIII	ACRYGT	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	283
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	5 cut(s)	20, 616, 997, 1177, 1257
AluI	AGCT	5 cut(s)	20, 616, 997, 1177, 1257
Alw21I	GWGCWC	2 cut(s)	164, 485
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	956
AoxI	GGCC	3 cut(s)	281, 907, 1239
ApeKI	GCWGC	1 cut(s)	802
ApoI	RAATTY	1 cut(s)	947
AspLEI	GCGC	2 cut(s)	316, 817
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	196, 421, 595
AsuII	TTCGAA	1 cut(s)	1260
AsuNHI	GCTAGC	1 cut(s)	1253
AvaI	CYCGRG	1 cut(s)	956
BalI	TGGCCA	1 cut(s)	1241
BanII	GRGCYC	1 cut(s)	658
BauI	CACGAG	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	164, 485
BbvI	GCAGC	1 cut(s)	789
BccI	CCATC	2 cut(s)	269, 554
BceAI	ACGGC	1 cut(s)	792
BcgI	CGANNNNNNTGC	4 cut(s)	774, 808, 1250, 1284
BciT130I	CCWGG	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	1095, 1254
BfmI	CTRYAG	4 cut(s)	151, 513, 611, 852
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	1 cut(s)	803
BlsI	GCNGC	1 cut(s)	804
Bme1390I	CCNGG	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	956
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	8 cut(s)	343, 406, 675, 769, 814, 838, 967, 1074
BmtI	GCTAGC	1 cut(s)	1257
BplI	GAGNNNNNCTC	2 cut(s)	780, 812
Bpu10I	CCTNAGC	1 cut(s)	797
Bpu14I	TTCGAA	1 cut(s)	1260
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	5 cut(s)	29, 368, 621, 910, 1131
BsaWI	WCCGGW	2 cut(s)	12, 96
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 930, 1156
Bse1I	ACTGG	3 cut(s)	809, 981, 1039
Bse3DI	GCAATG	2 cut(s)	47, 268
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	5 cut(s)	29, 368, 621, 910, 1131
BseGI	GGATG	5 cut(s)	240, 280, 421, 805, 870
BseLI	CCNNNNNNNGG	3 cut(s)	96, 930, 1156
BseMI	GCAATG	2 cut(s)	47, 268
BseMII	CTCAG	6 cut(s)	228, 365, 672, 811, 1004, 1146
BseNI	ACTGG	3 cut(s)	809, 981, 1039
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	789
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	3 cut(s)	283, 909, 1241
BsiHKAI	GWGCWC	2 cut(s)	164, 485
BsiHKCI	CYCGRG	1 cut(s)	956
BsiSI	CCGG	2 cut(s)	13, 97
BslFI	GGGAC	1 cut(s)	1081
BslI	CCNNNNNNNGG	3 cut(s)	96, 930, 1156
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	1081
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	283, 909, 1241
Bso31I	GGTCTC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	956
Bsp119I	TTCGAA	1 cut(s)	1260
Bsp1286I	GDGCHC	3 cut(s)	164, 485, 658
Bsp143I	GATC	3 cut(s)	237, 501, 1009
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	2 cut(s)	128, 758
BspANI	GGCC	3 cut(s)	283, 909, 1241
BspCNI	CTCAG	6 cut(s)	227, 366, 673, 810, 1005, 1147
BspLI	GGNNCC	1 cut(s)	510
BspOI	GCTAGC	1 cut(s)	1257
BspPI	GGATC	1 cut(s)	509
BspT104I	TTCGAA	1 cut(s)	1260
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	2 cut(s)	47, 268
BsrI	ACTGG	3 cut(s)	809, 981, 1039
BssECI	CCNNGG	5 cut(s)	29, 368, 621, 910, 1131
BssMI	GATC	3 cut(s)	237, 501, 1009
BssSI	CACGAG	1 cut(s)	247
BssT1I	CCWWGG	3 cut(s)	29, 368, 1131
Bst2BI	CACGAG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	381, 625, 1081
Bst6I	CTCTTC	2 cut(s)	52, 262
BstBI	TTCGAA	1 cut(s)	1260
BstC8I	GCNNGC	6 cut(s)	618, 862, 1124, 1211, 1215, 1255
BstDEI	CTNAG	8 cut(s)	214, 374, 681, 797, 896, 968, 1013, 1155
BstDSI	CCRYGG	2 cut(s)	368, 621
BstENI	CCTNNNNNAGG	1 cut(s)	1154
BstF5I	GGATG	5 cut(s)	240, 280, 421, 805, 870
BstHHI	GCGC	2 cut(s)	316, 817
BstKTI	GATC	3 cut(s)	240, 504, 1012
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	237, 501, 1009
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 653, 802, 857, 915
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	3 cut(s)	736, 1126, 1275
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	4 cut(s)	151, 513, 611, 852
BstV1I	GCAGC	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	283, 909, 1241
BtgI	CCRYGG	2 cut(s)	368, 621
BtsCI	GGATG	5 cut(s)	240, 280, 421, 805, 870
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	3 cut(s)	164, 840, 1152
Cac8I	GCNNGC	6 cut(s)	618, 862, 1124, 1211, 1215, 1255
CfoI	GCGC	2 cut(s)	316, 817
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	2 cut(s)	924, 950
Csp6I	GTAC	5 cut(s)	26, 253, 467, 1059, 1225
CviAII	CATG	9 cut(s)	369, 398, 733, 1051, 1116, 1123, 1196, 1272, 1293
CviQI	GTAC	5 cut(s)	26, 253, 467, 1059, 1225
DdeI	CTNAG	8 cut(s)	214, 374, 681, 797, 896, 968, 1013, 1155
DpnI	GATC	3 cut(s)	239, 503, 1011
DpnII	GATC	3 cut(s)	237, 501, 1009
EaeI	YGGCCR	1 cut(s)	1239
Eam1104I	CTCTTC	2 cut(s)	52, 262
EarI	CTCTTC	2 cut(s)	52, 262
Eco130I	CCWWGG	3 cut(s)	29, 368, 1131
Eco147I	AGGCCT	1 cut(s)	909
Eco24I	GRGCYC	1 cut(s)	658
Eco31I	GGTCTC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	1233
Eco88I	CYCGRG	1 cut(s)	956
EcoNI	CCTNNNNNAGG	1 cut(s)	1154
EcoRII	CCWGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	1233
EcoT14I	CCWWGG	3 cut(s)	29, 368, 1131
EcoT22I	ATGCAT	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	658
ErhI	CCWWGG	3 cut(s)	29, 368, 1131
FaeI	CATG	9 cut(s)	372, 401, 736, 1054, 1119, 1126, 1199, 1275, 1296
FaqI	GGGAC	1 cut(s)	1081
FatI	CATG	9 cut(s)	368, 397, 732, 1050, 1115, 1122, 1195, 1271, 1292
FauI	CCCGC	1 cut(s)	765
Fnu4HI	GCNGC	1 cut(s)	803
FokI	GGATG	5 cut(s)	247, 287, 428, 792, 857
FriOI	GRGCYC	1 cut(s)	658
Fsp4HI	GCNGC	1 cut(s)	803
FspBI	CTAG	2 cut(s)	1095, 1254
GlaI	GCGC	2 cut(s)	315, 816
GluI	GCNGC	1 cut(s)	803
HaeIII	GGCC	3 cut(s)	283, 909, 1241
HapII	CCGG	2 cut(s)	13, 97
HgaI	GACGC	2 cut(s)	924, 950
HhaI	GCGC	2 cut(s)	316, 817
Hin1II	CATG	9 cut(s)	372, 401, 736, 1054, 1119, 1126, 1199, 1275, 1296
Hin6I	GCGC	2 cut(s)	314, 815
HinP1I	GCGC	2 cut(s)	314, 815
HincII	GTYRAC	1 cut(s)	986
HindII	GTYRAC	1 cut(s)	986
HinfI	GANTC	7 cut(s)	4, 82, 93, 726, 746, 791, 1289
HpaII	CCGG	2 cut(s)	13, 97
HphI	GGTGA	3 cut(s)	196, 421, 595
Hpy166II	GTNNAC	2 cut(s)	986, 1113
Hpy188I	TCNGA	4 cut(s)	358, 664, 914, 1014
Hpy188III	TCNNGA	4 cut(s)	90, 443, 491, 743
Hpy8I	GTNNAC	2 cut(s)	986, 1113
HpyAV	CCTTC	3 cut(s)	225, 374, 1032
HpyCH4III	ACNGT	3 cut(s)	381, 625, 1081
HpyCH4IV	ACGT	2 cut(s)	75, 1006
HpyCH4V	TGCA	8 cut(s)	200, 334, 344, 557, 785, 805, 1050, 1271
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 653, 802, 857, 915
HpyF3I	CTNAG	8 cut(s)	214, 374, 681, 797, 896, 968, 1013, 1155
HpySE526I	ACGT	2 cut(s)	75, 1006
Hsp92II	CATG	9 cut(s)	372, 401, 736, 1054, 1119, 1126, 1199, 1275, 1296
HspAI	GCGC	2 cut(s)	314, 815
Kzo9I	GATC	3 cut(s)	237, 501, 1009
LmnI	GCTCC	4 cut(s)	508, 994, 1092, 1119
Lsp1109I	GCAGC	1 cut(s)	789
LweI	GCATC	8 cut(s)	343, 406, 675, 769, 814, 838, 967, 1074
MaeI	CTAG	2 cut(s)	1095, 1254
MaeII	ACGT	2 cut(s)	75, 1006
MalI	GATC	3 cut(s)	239, 503, 1011
MboI	GATC	3 cut(s)	237, 501, 1009
MhlI	GDGCHC	3 cut(s)	164, 485, 658
MlsI	TGGCCA	1 cut(s)	1241
MluCI	AATT	2 cut(s)	426, 947
MluNI	TGGCCA	1 cut(s)	1241
MlyI	GAGTC	2 cut(s)	87, 1298
Mox20I	TGGCCA	1 cut(s)	1241
Mph1103I	ATGCAT	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	1241
MslI	CAYNNNNRTG	4 cut(s)	137, 339, 969, 1079
Msp20I	TGGCCA	1 cut(s)	1241
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	2 cut(s)	13, 97
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	5 cut(s)	168, 653, 802, 857, 915
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	3 cut(s)	237, 501, 1009
NheI	GCTAGC	1 cut(s)	1253
NlaIII	CATG	9 cut(s)	372, 401, 736, 1054, 1119, 1126, 1199, 1275, 1296
NlaIV	GGNNCC	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	346
NspI	RCATGY	3 cut(s)	736, 1126, 1275
NspV	TTCGAA	1 cut(s)	1260
OliI	CACNNNNGTG	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	1126
PceI	AGGCCT	1 cut(s)	909
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	4 cut(s)	82, 726, 746, 791
PflMI	CCANNNNNTGG	1 cut(s)	930
PkrI	GCNGC	1 cut(s)	804
PleI	GAGTC	2 cut(s)	87, 1297
PpsI	GAGTC	2 cut(s)	87, 1297
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	5 cut(s)	27, 254, 468, 1060, 1226
RsaNI	GTAC	5 cut(s)	26, 253, 467, 1059, 1225
RseI	CAYNNNNRTG	4 cut(s)	137, 339, 969, 1079
SatI	GCNGC	1 cut(s)	803
Sau3AI	GATC	3 cut(s)	237, 501, 1009
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	2 cut(s)	87, 1298
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	3 cut(s)	164, 485, 658
SfaNI	GCATC	8 cut(s)	343, 406, 675, 769, 814, 838, 967, 1074
SfcI	CTRYAG	4 cut(s)	151, 513, 611, 852
SfuI	TTCGAA	1 cut(s)	1260
SmiMI	CAYNNNNRTG	4 cut(s)	137, 339, 969, 1079
SphI	GCATGC	1 cut(s)	1126
Sse9I	AATT	2 cut(s)	426, 947
SseBI	AGGCCT	1 cut(s)	909
SsiI	CCGC	2 cut(s)	128, 758
SspMI	CTAG	2 cut(s)	1095, 1254
StuI	AGGCCT	1 cut(s)	909
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	3 cut(s)	29, 368, 1131
TaaI	ACNGT	3 cut(s)	381, 625, 1081
TaiI	ACGT	2 cut(s)	78, 1009
TaqI	TCGA	5 cut(s)	108, 164, 531, 951, 1260
TasI	AATT	2 cut(s)	426, 947
TfiI	GAWTC	4 cut(s)	82, 726, 746, 791
TscAI	CASTG	3 cut(s)	164, 847, 1159
TseI	GCWGC	1 cut(s)	802
TspDTI	ATGAA	4 cut(s)	138, 529, 859, 1009
TspRI	CASTG	3 cut(s)	164, 847, 1159
Van91I	CCANNNNNTGG	1 cut(s)	930
XagI	CCTNNNNNAGG	1 cut(s)	1154
XapI	RAATTY	1 cut(s)	947
XceI	RCATGY	3 cut(s)	736, 1126, 1275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	988
XspI	CTAG	2 cut(s)	1095, 1254
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.