Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

16681058 .. 16690831

Gene Structure 9774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG079600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGATTCCTGTTATTGTAGTATTACTTTTCTTTGCCTCATCCATCATTTTAGGCTTTCTTATCCAAAAAACGAAGCGAGTAGTACTCCCACTAGTGCCACCTCTCCCTCCAGGACCAAGCCCATGGCCGATCATTGGATGTGTACCAGAGATGTGGAGGAACAGACCAGCATACAGATGGATACATGACCTTCTGAAACAGCTTAACACTGATATTGCATGTGTACGACTAGGAAAAGTTCATGTGATCGCAGTCAAATCACCTGAAATTGCCAGAGAATTCTTGAAAAAACACGACGCTGTTTTTGCATCACGACCCATTACCATGGCTACTCACCTCTTCAGTAGTGGATACTTGACAGTAGGTGTTACACCTATGGGAGAGCAGTGGAAGAAAATGAGAAGGGTTTTGATTGCCGAAGTGTTTAATCAGTCCAGACTACGGTGGCTACTCGATAAGAGAAACGATGAAGCGGACAATCTTGTGAAGTTTCTCTATAGTCAGTGCTTGAATAACGAGAATGGTTCGGTGGTGAATGTGAGAATTGCAGCCCAACATTACTCAGCAAATGTGATGAGAAGAATGTTTTTCAACACGAGGTACTTTGGCAAAGGGAGAGAGGATGGAGGGCCAGGACTTGAAGAAGAATTACACGTCTCTGCGCTTTTCACATTGGTCTTGCATACGTATGCATTCTGTGTATCCGATTACCTTCCATGGTTGAGGCCGTTTGACATAGGTGGGCATGAGAAAAAGGTCAAGGATGCTTTGAAAATTATCAAACAGTATCAGGACCCTATTATAGATGAGAGAGTACGAATGTGGAGGTGCTCAAATCAGGAGAATAGGATCAAGGCGCCTGTAGAGGAGAGCCTGCTCGATGTTTTCATCTCACTCAAAGGTGCAGATGGGCAACCTTTATTATCAGCTGAAGAAATTAAAGCACAAATCACTGAGTTTACTTATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

323

Amino Acids

37.01

Weight (kDa)

9.28

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	36 - 321	9.6e-25	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	856
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	1 cut(s)	857
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	2 cut(s)	325, 951
AcyI	GRCGYC	1 cut(s)	857
AfaI	GTAC	5 cut(s)	84, 144, 225, 602, 816
AfiI	CCNNNNNNNGG	2 cut(s)	134, 441
AflIII	ACRYGT	1 cut(s)	652
AgsI	TTSAA	5 cut(s)	286, 511, 592, 641, 772
AhlI	ACTAGT	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	109, 631
AluBI	AGCT	2 cut(s)	202, 929
AluI	AGCT	2 cut(s)	202, 929
Alw21I	GWGCWC	1 cut(s)	833
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	1 cut(s)	857
AoxI	GGCC	3 cut(s)	125, 629, 725
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspLEI	GCGC	2 cut(s)	664, 859
AspS9I	GGNCC	3 cut(s)	113, 629, 793
AsuHPI	GGTGA	3 cut(s)	252, 326, 544
AvaII	GGWCC	2 cut(s)	113, 793
BanI	GGYRCC	1 cut(s)	856
BarI	GAAGNNNNNNTAC	2 cut(s)	633, 665
BauI	CACGAG	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	833
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	4 cut(s)	50, 171, 617, 902
BceAI	ACGGC	1 cut(s)	712
BciT130I	CCWGG	2 cut(s)	111, 633
BciVI	GTATCC	3 cut(s)	174, 344, 712
BcoDI	GTCTC	1 cut(s)	661
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 230
BfmI	CTRYAG	2 cut(s)	496, 861
BfoI	RGCGCY	1 cut(s)	860
BfuI	GTATCC	3 cut(s)	174, 344, 712
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	111, 633
Bme18I	GGWCC	2 cut(s)	113, 793
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	3 cut(s)	113, 629, 793
BmiI	GGNNCC	2 cut(s)	795, 858
BmrFI	CCNGG	2 cut(s)	111, 633
BmsI	GCATC	2 cut(s)	317, 754
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpmI	CTGGAG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	687
BsaHI	GRCGYC	1 cut(s)	857
BsaJI	CCNNGG	3 cut(s)	122, 324, 716
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 441
BseBI	CCWGG	2 cut(s)	111, 633
BseDI	CCNNGG	3 cut(s)	122, 324, 716
BseGI	GGATG	4 cut(s)	38, 143, 628, 769
BseLI	CCNNNNNNNGG	2 cut(s)	134, 441
BseMII	CTCAG	2 cut(s)	576, 945
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	924
BshFI	GGCC	3 cut(s)	127, 631, 727
BshNI	GGYRCC	1 cut(s)	856
BsiHKAI	GWGCWC	1 cut(s)	833
BslI	CCNNNNNNNGG	2 cut(s)	134, 441
BsmAI	GTCTC	1 cut(s)	661
BsmBI	CGTCTC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	127, 631, 727
Bsp1286I	GDGCHC	1 cut(s)	833
Bsp143I	GATC	3 cut(s)	129, 246, 849
Bsp19I	CCATGG	3 cut(s)	122, 324, 716
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	3 cut(s)	127, 631, 727
BspCNI	CTCAG	2 cut(s)	575, 946
BspLI	GGNNCC	2 cut(s)	795, 858
BspPI	GGATC	1 cut(s)	857
BspT107I	GGYRCC	1 cut(s)	856
BssECI	CCNNGG	3 cut(s)	122, 324, 716
BssMI	GATC	3 cut(s)	129, 246, 849
BssNI	GRCGYC	1 cut(s)	857
BssSI	CACGAG	1 cut(s)	595
BssT1I	CCWWGG	3 cut(s)	122, 324, 716
Bst2BI	CACGAG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	111, 633
Bst4CI	ACNGT	3 cut(s)	361, 444, 786
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	857
BstBAI	YACGTR	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	875
BstDEI	CTNAG	2 cut(s)	562, 954
BstDSI	CCRYGG	3 cut(s)	122, 324, 716
BstF5I	GGATG	4 cut(s)	38, 143, 628, 769
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	2 cut(s)	664, 859
BstKTI	GATC	3 cut(s)	132, 249, 852
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	3 cut(s)	129, 246, 849
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	2 cut(s)	111, 633
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	109, 631
BstSFI	CTRYAG	2 cut(s)	496, 861
BstSNI	TACGTA	1 cut(s)	687
BstV1I	GCAGC	1 cut(s)	560
BstXI	CCANNNNNNTGG	3 cut(s)	123, 153, 325
BsuI	GTATCC	3 cut(s)	174, 344, 712
BsuRI	GGCC	3 cut(s)	127, 631, 727
BtgI	CCRYGG	3 cut(s)	122, 324, 716
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	4 cut(s)	38, 143, 628, 769
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	4 cut(s)	207, 392, 509, 951
Cac8I	GCNNGC	1 cut(s)	875
CfoI	GCGC	2 cut(s)	664, 859
Cfr13I	GGNCC	3 cut(s)	113, 629, 793
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	5 cut(s)	83, 143, 224, 601, 815
CviAII	CATG	7 cut(s)	123, 185, 219, 242, 325, 717, 746
CviQI	GTAC	5 cut(s)	83, 143, 224, 601, 815
DdeI	CTNAG	2 cut(s)	562, 954
DinI	GGCGCC	1 cut(s)	858
DpnI	GATC	3 cut(s)	131, 248, 851
DpnII	GATC	3 cut(s)	129, 246, 849
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco105I	TACGTA	1 cut(s)	687
Eco130I	CCWWGG	3 cut(s)	122, 324, 716
Eco47I	GGWCC	2 cut(s)	113, 793
Eco57I	CTGAAG	2 cut(s)	325, 951
EcoO109I	RGGNCCY	1 cut(s)	793
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	109, 631
EcoT14I	CCWWGG	3 cut(s)	122, 324, 716
EcoT22I	ATGCAT	1 cut(s)	694
EgeI	GGCGCC	1 cut(s)	858
EheI	GGCGCC	1 cut(s)	858
ErhI	CCWWGG	3 cut(s)	122, 324, 716
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	7 cut(s)	126, 188, 222, 245, 328, 720, 749
FatI	CATG	7 cut(s)	122, 184, 218, 241, 324, 716, 745
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	4 cut(s)	25, 150, 635, 776
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	2 cut(s)	92, 230
GlaI	GCGC	2 cut(s)	663, 858
GluI	GCNGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	860
HaeIII	GGCC	3 cut(s)	127, 631, 727
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	664, 859
Hin1I	GRCGYC	1 cut(s)	857
Hin1II	CATG	7 cut(s)	126, 188, 222, 245, 328, 720, 749
Hin6I	GCGC	2 cut(s)	662, 857
HinP1I	GCGC	2 cut(s)	662, 857
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	3 cut(s)	252, 326, 544
Hpy166II	GTNNAC	3 cut(s)	143, 224, 960
Hpy188I	TCNGA	2 cut(s)	195, 706
Hpy188III	TCNNGA	5 cut(s)	283, 312, 435, 791, 839
Hpy8I	GTNNAC	3 cut(s)	143, 224, 960
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	200, 396, 722
HpyCH4III	ACNGT	3 cut(s)	361, 444, 786
HpyCH4IV	ACGT	2 cut(s)	654, 686
HpyCH4V	TGCA	6 cut(s)	218, 308, 548, 682, 692, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	562, 954
HpySE526I	ACGT	2 cut(s)	654, 686
Hsp92I	GRCGYC	1 cut(s)	857
Hsp92II	CATG	7 cut(s)	126, 188, 222, 245, 328, 720, 749
HspAI	GCGC	2 cut(s)	662, 857
KasI	GGCGCC	1 cut(s)	856
Kzo9I	GATC	3 cut(s)	129, 246, 849
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	2 cut(s)	317, 754
MaeI	CTAG	2 cut(s)	92, 230
MaeII	ACGT	2 cut(s)	654, 686
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	131, 248, 851
MboI	GATC	3 cut(s)	129, 246, 849
MboII	GAAGA	6 cut(s)	331, 403, 591, 653, 656, 944
MhlI	GDGCHC	1 cut(s)	833
MluCI	AATT	6 cut(s)	267, 278, 543, 647, 774, 936
Mly113I	GGCGCC	1 cut(s)	857
Mph1103I	ATGCAT	1 cut(s)	694
MseI	TTAA	3 cut(s)	204, 426, 939
MslI	CAYNNNNRTG	3 cut(s)	175, 323, 687
MspA1I	CMGCKG	1 cut(s)	929
MspR9I	CCNGG	2 cut(s)	111, 633
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	2 cut(s)	111, 633
MwoI	GCNNNNNNNGC	1 cut(s)	305
NarI	GGCGCC	1 cut(s)	857
NcoI	CCATGG	3 cut(s)	122, 324, 716
NdeII	GATC	3 cut(s)	129, 246, 849
NlaIII	CATG	7 cut(s)	126, 188, 222, 245, 328, 720, 749
NlaIV	GGNNCC	2 cut(s)	795, 858
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	222
PctI	GAATGC	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	550
PluTI	GGCGCC	1 cut(s)	860
Ppu21I	YACGTR	1 cut(s)	687
PpuMI	RGGWCCY	1 cut(s)	793
Psp5II	RGGWCCY	1 cut(s)	793
Psp6I	CCWGG	2 cut(s)	109, 631
PspGI	CCWGG	2 cut(s)	109, 631
PspN4I	GGNNCC	2 cut(s)	795, 858
PspPI	GGNCC	3 cut(s)	113, 629, 793
PspPPI	RGGWCCY	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	5 cut(s)	84, 144, 225, 602, 816
RsaNI	GTAC	5 cut(s)	83, 143, 224, 601, 815
RseI	CAYNNNNRTG	3 cut(s)	175, 323, 687
SaqAI	TTAA	3 cut(s)	204, 426, 939
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	3 cut(s)	129, 246, 849
Sau96I	GGNCC	3 cut(s)	113, 629, 793
ScaI	AGTACT	1 cut(s)	84
ScrFI	CCNGG	2 cut(s)	111, 633
SduI	GDGCHC	1 cut(s)	833
SfaNI	GCATC	2 cut(s)	317, 754
SfcI	CTRYAG	2 cut(s)	496, 861
SfoI	GGCGCC	1 cut(s)	858
SinI	GGWCC	2 cut(s)	113, 793
SmiMI	CAYNNNNRTG	3 cut(s)	175, 323, 687
SnaBI	TACGTA	1 cut(s)	687
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	6 cut(s)	267, 278, 543, 647, 774, 936
SsiI	CCGC	1 cut(s)	473
SspDI	GGCGCC	1 cut(s)	856
SspMI	CTAG	2 cut(s)	92, 230
StyD4I	CCNGG	2 cut(s)	109, 631
StyI	CCWWGG	3 cut(s)	122, 324, 716
TaaI	ACNGT	3 cut(s)	361, 444, 786
TaiI	ACGT	2 cut(s)	657, 689
TaqI	TCGA	2 cut(s)	453, 879
TasI	AATT	6 cut(s)	267, 278, 543, 647, 774, 936
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	204, 426, 939
Tru9I	TTAA	3 cut(s)	204, 426, 939
TscAI	CASTG	4 cut(s)	214, 392, 509, 958
TseI	GCWGC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	230, 483, 877
TspGWI	ACGGA	1 cut(s)	957
TspRI	CASTG	4 cut(s)	214, 392, 509, 958
VpaK11BI	GGWCC	2 cut(s)	113, 793
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	1 cut(s)	222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XspI	CTAG	2 cut(s)	92, 230
ZrmI	AGTACT	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.