AT5G37490

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001443
Physical Location & Seq
Forward (+)
14887429 .. 14889151
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37490.1

Sequence Viewer

Length: 1308 bp
ATGGGTTTTTTATGGAGAACGAGATCTAACGAGAAGAAGATAACTCCGGTTTTGAGTTGGCCGGAATCAGAACCGGAGTCAGAGATAACAATTCCACCGGAGTTTCAATGTCCAATCTCGATCGATCTAATGAAAGATCCAGTAATAATCTCAACAGGCATTACTTACGACCGCGTAAGCATCGAAACATGGATCAATTCAGGCAACAAAACATGTCCAGTCACGAACACTGTCTTAACCACGTTCGATCAAATCCCAAACCACACGATTCGTAAGATGATTCAAGGATGGTGCGTGGAGAAAGGATCGCCGTTGATTCAACGTATTCCGACGCCACGTGTCCCTTTAATGCCATGTGAGGTCTACGAGATTAGTAGAAAATTATCGTCTGCGACGCGGCGTGGGGATTACGAGAAATGTGGGGTGATTATTGAGAAGATTAAGAAGTTAGGGGATGAGAGTGAGAAAAATCGAAAGTGTGTTAATGAAAACAGCGTCGGATGGGTTCTTTGTGATTGTTTCGACAAGTTCTCGGGAGATGAGAAATTAACGTTTATGTTGAATGAGATTTTGTCTTTGCTGACGTGGATGTTTCCGATTGGTTTAGAGGGTATTTCGAAACTCGCGTCTGCGACATCATTTCGTTGCGTGGCGGGTTTGTTGAAGAGTACGGATGATTCCGTTCGTCAAAACGCCGCGTTTATTATGAAGGAGATTCTCTCATTAGACGAAACGCGAGTTCACTCGTTTGCGGTTGAGAACGGAGTCGCCGAAGCGTTAGTAAAGTTGATTCGCGATTCGGTTTCGTCTAGTTCAACAAAATCTTCGTTGATAGCGATTTATCAAATGGTGTTGCAAAAGCCTGAAATCGCGTCGGAGTTTCTCGAAATTGGTTTGGTGAGTATAACGGTGGAGATGATCGTTGATGCCGAGAATAGCGTTTGTGAAAAAGCGTTAGCGGTTCTTGACGCGATTTGCGAAACAGAACATGGTAGAGAGGAAGTGAGGAAAAATGCGTTGGTGATGCCGCTTTTGGTGAAGAAGATTGCGAAGGTTTCTGAATTAGCGACTAGGAGCTCAATGTCAATGATTTTGAAGCTGTGGAAAACAGGAAACACGGTTGCGGTTGAAGATGCGGTGCGTTTGGGCGCGTTTCAGAAGGTGTTGCTTGTGTTGCAAGTTGGGTATGGAGAAGAGACTAAGGAGAAAGCGACAGAGTTGTTGAAGATGATGAATACACAAATGAAATTGATGAGTGATTGTGTTGATTCTTTAAAAGAGTTTAAGTATATCAAAAAGCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0050896 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box

Protein Analysis

435

Amino Acids

48.72

Weight (kDa)

6.14

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 31 - 101 2.5e-21 U-box domain
ARM_PUB PF25598 120 - 431 2.6e-104 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 363
AccII CGCG 9 cut(s) 174, 397, 626, 698, 736, 795, 872, 971, 1151
AciI CCGC 9 cut(s) 172, 397, 653, 696, 752, 959, 1028, 1124, 1136
AclI AACGTT 1 cut(s) 551
AclWI GGATC 3 cut(s) 131, 200, 313
AcoI YGGCCR 1 cut(s) 59
AcvI CACGTG 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 1 cut(s) 670
AflIII ACRYGT 2 cut(s) 212, 337
AgsI TTSAA 9 cut(s) 107, 284, 320, 562, 664, 816, 1096, 1130, 1225
AjiI CACGTC 1 cut(s) 585
AjuI GAANNNNNNNTTGG 2 cut(s) 1001, 1033
AluBI AGCT 2 cut(s) 1077, 1099
AluI AGCT 2 cut(s) 1077, 1099
Alw21I GWGCWC 1 cut(s) 1079
Alw26I GTCTC 1 cut(s) 1190
AlwI GGATC 3 cut(s) 131, 200, 313
Ama87I CYCGRG 1 cut(s) 532
AoxI GGCC 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
AspLEI GCGC 1 cut(s) 1151
AsuHPI GGTGA 4 cut(s) 436, 910, 1033, 1048
AsuII TTCGAA 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 532
BanII GRGCYC 1 cut(s) 1079
BbrPI CACGTG 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 1079
BccI CCATC 2 cut(s) 282, 495
BceAI ACGGC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 1190
BfaI CTAG 2 cut(s) 810, 1071
BglII AGATCT 1 cut(s) 23
BisI GCNGC 3 cut(s) 398, 696, 1028
BlsI GCNGC 3 cut(s) 399, 697, 1029
BmeT110I CYCGRG 1 cut(s) 532
BmgBI CACGTC 1 cut(s) 585
BmsI GCATC 4 cut(s) 189, 916, 1014, 1123
BplI GAGNNNNNCTC 2 cut(s) 704, 736
Bpu14I TTCGAA 1 cut(s) 617
Bsa29I ATCGAT 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 332
BsaWI WCCGGW 3 cut(s) 46, 73, 97
Bse1I ACTGG 2 cut(s) 140, 218
BseCI ATCGAT 1 cut(s) 123
BseGI GGATG 5 cut(s) 293, 460, 506, 594, 679
BseNI ACTGG 2 cut(s) 140, 218
Bsh1236I CGCG 9 cut(s) 174, 397, 626, 698, 736, 795, 872, 971, 1151
Bsh1285I CGRYCG 2 cut(s) 123, 172
BshFI GGCC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 2 cut(s) 123, 172
BsiHKAI GWGCWC 1 cut(s) 1079
BsiHKCI CYCGRG 1 cut(s) 532
BsiSI CCGG 4 cut(s) 47, 62, 74, 98
BslFI GGGAC 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 1190
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 532
Bsp119I TTCGAA 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 1079
Bsp143I GATC 8 cut(s) 23, 120, 124, 136, 192, 247, 305, 918
Bsp68I TCGCGA 1 cut(s) 795
BspACI CCGC 9 cut(s) 172, 397, 653, 696, 752, 959, 1028, 1124, 1136
BspANI GGCC 1 cut(s) 61
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 9 cut(s) 174, 397, 626, 698, 736, 795, 872, 971, 1151
BspPI GGATC 3 cut(s) 131, 200, 313
BspT104I TTCGAA 1 cut(s) 617
BsrI ACTGG 2 cut(s) 140, 218
BssMI GATC 8 cut(s) 23, 120, 124, 136, 192, 247, 305, 918
BssNI GRCGYC 1 cut(s) 332
Bst4CI ACNGT 3 cut(s) 232, 910, 1120
Bst6I CTCTTC 2 cut(s) 659, 1188
BstACI GRCGYC 1 cut(s) 332
BstBAI YACGTR 1 cut(s) 338
BstBI TTCGAA 1 cut(s) 617
BstDEI CTNAG 1 cut(s) 1200
BstF5I GGATG 5 cut(s) 293, 460, 506, 594, 679
BstFNI CGCG 9 cut(s) 174, 397, 626, 698, 736, 795, 872, 971, 1151
BstHHI GCGC 1 cut(s) 1151
BstKTI GATC 8 cut(s) 26, 123, 127, 139, 195, 250, 308, 921
BstMAI GTCTC 1 cut(s) 1190
BstMBI GATC 8 cut(s) 23, 120, 124, 136, 192, 247, 305, 918
BstMCI CGRYCG 2 cut(s) 123, 172
BstMWI GCNNNNNNNGC 1 cut(s) 1174
BstNSI RCATGY 1 cut(s) 216
BstUI CGCG 9 cut(s) 174, 397, 626, 698, 736, 795, 872, 971, 1151
BstX2I RGATCY 2 cut(s) 23, 136
BstYI RGATCY 2 cut(s) 23, 136
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 1 cut(s) 61
BsuTUI ATCGAT 1 cut(s) 123
BtrI CACGTC 1 cut(s) 585
BtsCI GGATG 5 cut(s) 293, 460, 506, 594, 679
BtsIMutI CAGTG 1 cut(s) 228
BtuMI TCGCGA 1 cut(s) 795
CfoI GCGC 1 cut(s) 1151
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 6 cut(s) 340, 403, 484, 615, 861, 977
Csp6I GTAC 1 cut(s) 669
CviAII CATG 4 cut(s) 189, 213, 354, 989
CviJI RGCY 5 cut(s) 61, 862, 1077, 1099, 1300
CviKI_1 RGCY 5 cut(s) 61, 862, 1077, 1099, 1300
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 1 cut(s) 1200
DpnI GATC 8 cut(s) 25, 122, 126, 138, 194, 249, 307, 920
DpnII GATC 8 cut(s) 23, 120, 124, 136, 192, 247, 305, 918
DraI TTTAAA 1 cut(s) 1275
EaeI YGGCCR 1 cut(s) 59
Eam1104I CTCTTC 2 cut(s) 659, 1188
EarI CTCTTC 2 cut(s) 659, 1188
Ecl136II GAGCTC 1 cut(s) 1077
Eco24I GRGCYC 1 cut(s) 1079
Eco53kI GAGCTC 1 cut(s) 1077
Eco72I CACGTG 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 1077
EcoT38I GRGCYC 1 cut(s) 1079
FaeI CATG 4 cut(s) 192, 216, 357, 992
FaqI GGGAC 1 cut(s) 326
FatI CATG 4 cut(s) 188, 212, 353, 988
FauI CCCGC 1 cut(s) 646
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 398, 696, 1028
FokI GGATG 5 cut(s) 300, 467, 513, 601, 686
FriOI GRGCYC 1 cut(s) 1079
Fsp4HI GCNGC 3 cut(s) 398, 696, 1028
FspBI CTAG 2 cut(s) 810, 1071
GlaI GCGC 1 cut(s) 1150
GluI GCNGC 3 cut(s) 398, 696, 1028
HaeIII GGCC 1 cut(s) 61
HapII CCGG 4 cut(s) 47, 62, 74, 98
HgaI GACGC 6 cut(s) 340, 403, 484, 615, 861, 977
HhaI GCGC 1 cut(s) 1151
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 4 cut(s) 192, 216, 357, 992
Hin6I GCGC 1 cut(s) 1149
HinP1I GCGC 1 cut(s) 1149
HpaII CCGG 4 cut(s) 47, 62, 74, 98
HphI GGTGA 4 cut(s) 436, 910, 1033, 1048
Hpy166II GTNNAC 2 cut(s) 364, 742
Hpy188I TCNGA 8 cut(s) 70, 82, 330, 500, 597, 877, 1060, 1158
Hpy188III TCNNGA 6 cut(s) 118, 223, 534, 794, 884, 965
Hpy8I GTNNAC 2 cut(s) 364, 742
Hpy99I CGWCG 4 cut(s) 334, 397, 500, 877
HpyAV CCTTC 3 cut(s) 703, 1045, 1153
HpyCH4III ACNGT 3 cut(s) 232, 910, 1120
HpyCH4IV ACGT 5 cut(s) 242, 322, 337, 551, 584
HpyCH4V TGCA 2 cut(s) 856, 1177
HpyF10VI GCNNNNNNNGC 1 cut(s) 1174
HpyF3I CTNAG 1 cut(s) 1200
HpySE526I ACGT 5 cut(s) 242, 322, 337, 551, 584
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 4 cut(s) 192, 216, 357, 992
HspAI GCGC 1 cut(s) 1149
Kzo9I GATC 8 cut(s) 23, 120, 124, 136, 192, 247, 305, 918
LmnI GCTCC 1 cut(s) 1074
LweI GCATC 4 cut(s) 189, 916, 1014, 1123
MaeI CTAG 2 cut(s) 810, 1071
MaeII ACGT 5 cut(s) 242, 322, 337, 551, 584
MaeIII GTNAC 1 cut(s) 220
MalI GATC 8 cut(s) 25, 122, 126, 138, 194, 249, 307, 920
MboI GATC 8 cut(s) 23, 120, 124, 136, 192, 247, 305, 918
MflI RGATCY 2 cut(s) 23, 136
MhlI GDGCHC 1 cut(s) 1079
MluCI AATT 7 cut(s) 90, 196, 380, 545, 888, 1061, 1247
MlyI GAGTC 2 cut(s) 86, 774
MmeI TCCRAC 3 cut(s) 353, 478, 855
MnlI CCTC 4 cut(s) 352, 601, 991, 999
MseI TTAA 7 cut(s) 236, 347, 441, 483, 548, 1274, 1284
MspI CCGG 4 cut(s) 47, 62, 74, 98
MvnI CGCG 9 cut(s) 174, 397, 626, 698, 736, 795, 872, 971, 1151
MwoI GCNNNNNNNGC 1 cut(s) 1174
NdeII GATC 8 cut(s) 23, 120, 124, 136, 192, 247, 305, 918
NlaIII CATG 4 cut(s) 192, 216, 357, 992
NmeAIII GCCGAG 1 cut(s) 955
NmuCI GTSAC 1 cut(s) 220
NruI TCGCGA 1 cut(s) 795
NspI RCATGY 1 cut(s) 216
NspV TTCGAA 1 cut(s) 617
PciI ACATGT 1 cut(s) 212
PcsI WCGNNNNNNNCGW 5 cut(s) 623, 768, 833, 927, 975
PfeI GAWTC 9 cut(s) 65, 268, 280, 316, 677, 715, 790, 797, 1268
PkrI GCNGC 3 cut(s) 399, 697, 1029
Ple19I CGATCG 1 cut(s) 123
PleI GAGTC 2 cut(s) 85, 773
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
PpsI GAGTC 2 cut(s) 85, 773
Ppu21I YACGTR 1 cut(s) 338
PscI ACATGT 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 1079
Psp1406I AACGTT 1 cut(s) 551
PspCI CACGTG 1 cut(s) 338
PsuI RGATCY 2 cut(s) 23, 136
PvuI CGATCG 1 cut(s) 123
RruI TCGCGA 1 cut(s) 795
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
SacI GAGCTC 1 cut(s) 1079
SaqAI TTAA 7 cut(s) 236, 347, 441, 483, 548, 1274, 1284
SatI GCNGC 3 cut(s) 398, 696, 1028
Sau3AI GATC 8 cut(s) 23, 120, 124, 136, 192, 247, 305, 918
SchI GAGTC 2 cut(s) 86, 774
SduI GDGCHC 1 cut(s) 1079
SfaNI GCATC 4 cut(s) 189, 916, 1014, 1123
SfuI TTCGAA 1 cut(s) 617
Sse9I AATT 7 cut(s) 90, 196, 380, 545, 888, 1061, 1247
SsiI CCGC 9 cut(s) 172, 397, 653, 696, 752, 959, 1028, 1124, 1136
SspMI CTAG 2 cut(s) 810, 1071
SstI GAGCTC 1 cut(s) 1079
TaaI ACNGT 3 cut(s) 232, 910, 1120
TaiI ACGT 5 cut(s) 245, 325, 340, 554, 587
TaqI TCGA 8 cut(s) 119, 123, 183, 246, 472, 522, 617, 885
TasI AATT 7 cut(s) 90, 196, 380, 545, 888, 1061, 1247
TauI GCSGC 3 cut(s) 400, 698, 1030
TfiI GAWTC 9 cut(s) 65, 268, 280, 316, 677, 715, 790, 797, 1268
Tru1I TTAA 7 cut(s) 236, 347, 441, 483, 548, 1274, 1284
Tru9I TTAA 7 cut(s) 236, 347, 441, 483, 548, 1274, 1284
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 5 cut(s) 146, 501, 722, 1247, 1259
TspGWI ACGGA 3 cut(s) 670, 686, 777
TspRI CASTG 1 cut(s) 235
XceI RCATGY 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 2 cut(s) 810, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.