pycom16g01430

U-box domain-containing protein 21-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001443
Physical Location & Seq
Forward (+)
898529 .. 899590
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01430.1

Sequence Viewer

Length: 1062 bp
ATGATACAAGATTGGTGCGTCGAGAAAAAGTCTTTTGGAATCGAGCGCATTCCCACCCCTCGCATTCCGATCAGTTCGGTTCAGGTTACCGAGATTTTATCAAAGATCTCGACATCGAGTCATCATCAGAACAATGATTGCCAAGTTTTGGTGGCGAAGATCAAGGCGTTGGCGAAAGAAAGCGAACGCAACAAGCGTTGCATTGTGGCTAGTGGCACGGGGAGCGTCTTAGCGGGTGCGTTTAGTGCACTTTCAAATTCTCAACACCATCAAAACGTTGCCGTTTTGGAGGAGATTTTGTCTGCTTTGACTTTGGTTTTCCCGCTTGACGGGGAGGCCAGTTTGTACCTCGGGTCGCCTGCTTCGTTGCGTTGCATGGTGTGGTTTTTGGAGAGTGGAGATTTGTCGCAGAGGCGAAACGCAGCGTTAGTGCTCAAAGAGACAGCTGTCTCATCCGATCATGATCATCAGAAGATCGATGCTTTGGCAGAGATCGAAGGAGCTCTCGAAGCGCTAGTGAAGCTGATCAAAGAACCAGTTTGCGCTACTTCTACAAAAGCGTCCTTGGTCATCATTTATCAAATGGTTAACTCATCATCGTCTCTTTCGAAAGAGAAAATTAAAGAGAGATTTGTAGAGATGGAATTGGTGTCGATGCTTTCGGACATTCTTGTAGATGCCGAAAGAAGTATTTGCGAGAAGGCGTTGGGAGTTCTTGACGGACTTTGTGGAAGCCAGCAAGGGAGGGAAAAGGCCTACCTTCATGCCTTGACCATGCCGGTTGTGGTGAAAAAGATACTTAGGGTTTCGGATCTGGCCACAGAGTTTTCTGTGTCTATTCTTTGGAAGCTTTGCAAGAACGAGACCAGGGAAGATGGAGGTGTAGTCGTGGAGTCCCTTCAAGTGGGTGCGTTTCAGAAGCTCTTGCTGCTTTTGCAAGTTGGGTGTGCGGAGAGGACCAAAGAAAAGGCCACGGACTTGTTGAAGGCGTTGAACATTCATAGGGAGAGGTTGGAGTGCATTGATTCTATGGATTTTAAGCAGCTCAAGAGGTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0050896 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box

Protein Analysis

354

Amino Acids

38.86

Weight (kDa)

6.72

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 29 - 348 2.6e-69 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 148
AciI CCGC 3 cut(s) 233, 323, 950
AclI AACGTT 1 cut(s) 276
AclWI GGATC 1 cut(s) 819
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 1 cut(s) 347
AfeI AGCGCT 1 cut(s) 513
AfiI CCNNNNNNNGG 3 cut(s) 148, 329, 904
AgsI TTSAA 4 cut(s) 255, 902, 985, 994
AhdI GACNNNNNGTC 1 cut(s) 117
AjnI CCWGG 1 cut(s) 866
AluBI AGCT 6 cut(s) 446, 503, 523, 850, 922, 1045
AluI AGCT 6 cut(s) 446, 503, 523, 850, 922, 1045
Alw21I GWGCWC 3 cut(s) 250, 435, 505
Alw26I GTCTC 4 cut(s) 434, 454, 606, 857
Alw44I GTGCAC 1 cut(s) 246
AlwI GGATC 1 cut(s) 819
Ama87I CYCGRG 1 cut(s) 350
Aor51HI AGCGCT 1 cut(s) 513
AoxI GGCC 4 cut(s) 336, 753, 816, 969
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 3 cut(s) 422, 928, 1042
ApoI RAATTY 1 cut(s) 256
AspLEI GCGC 3 cut(s) 48, 514, 545
AspS9I GGNCC 1 cut(s) 957
AsuHPI GGTGA 1 cut(s) 799
AsuII TTCGAA 1 cut(s) 608
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 1 cut(s) 957
BaeGI GKGCMC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 818
BanII GRGCYC 1 cut(s) 505
Bbv12I GWGCWC 3 cut(s) 250, 435, 505
BbvI GCAGC 3 cut(s) 434, 915, 1054
BccI CCATC 3 cut(s) 276, 634, 869
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 868
BclI TGATCA 2 cut(s) 463, 525
BcoDI GTCTC 4 cut(s) 434, 454, 606, 857
BfaI CTAG 2 cut(s) 210, 515
BfoI RGCGCY 1 cut(s) 515
BglII AGATCT 1 cut(s) 105
BisI GCNGC 3 cut(s) 423, 929, 1043
BlsI GCNGC 3 cut(s) 424, 930, 1044
Bme1390I CCNGG 1 cut(s) 868
Bme18I GGWCC 1 cut(s) 957
BmeRI GACNNNNNGTC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 957
BmrFI CCNGG 1 cut(s) 868
BmsI GCATC 3 cut(s) 469, 645, 667
BoxI GACNNNNGTC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 1031
Bsa29I ATCGAT 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 4 cut(s) 349, 564, 867, 972
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 870, 900
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 329, 904
Bse118I RCCGGY 1 cut(s) 778
Bse1I ACTGG 2 cut(s) 339, 536
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 1 cut(s) 868
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 4 cut(s) 349, 564, 867, 972
BseGI GGATG 1 cut(s) 452
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 3 cut(s) 148, 329, 904
BseNI ACTGG 2 cut(s) 339, 536
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 3 cut(s) 434, 915, 1054
BshFI GGCC 4 cut(s) 338, 755, 818, 971
BshVI ATCGAT 1 cut(s) 477
BsiHKAI GWGCWC 3 cut(s) 250, 435, 505
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 1 cut(s) 779
BslFI GGGAC 1 cut(s) 880
BslI CCNNNNNNNGG 3 cut(s) 148, 329, 904
BsmAI GTCTC 4 cut(s) 434, 454, 606, 857
BsmBI CGTCTC 1 cut(s) 606
BsmFI GGGAC 1 cut(s) 880
BsmI GAATGC 2 cut(s) 48, 63
BsnI GGCC 4 cut(s) 338, 755, 818, 971
Bso31I GGTCTC 1 cut(s) 857
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 608
Bsp1286I GDGCHC 3 cut(s) 250, 435, 505
Bsp143I GATC 9 cut(s) 69, 105, 159, 457, 463, 474, 492, 525, 811
BspACI CCGC 3 cut(s) 233, 323, 950
BspANI GGCC 4 cut(s) 338, 755, 818, 971
BspDI ATCGAT 1 cut(s) 477
BspHI TCATGA 1 cut(s) 460
BspPI GGATC 1 cut(s) 819
BspT104I TTCGAA 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 857
BsrFI RCCGGY 1 cut(s) 778
BsrI ACTGG 2 cut(s) 339, 536
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 4 cut(s) 349, 564, 867, 972
BssMI GATC 9 cut(s) 69, 105, 159, 457, 463, 474, 492, 525, 811
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 1 cut(s) 868
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 360, 737
BstDEI CTNAG 2 cut(s) 229, 800
BstDSI CCRYGG 1 cut(s) 972
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 1 cut(s) 452
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 3 cut(s) 48, 514, 545
BstKTI GATC 9 cut(s) 72, 108, 162, 460, 466, 477, 495, 528, 814
BstMAI GTCTC 4 cut(s) 434, 454, 606, 857
BstMBI GATC 9 cut(s) 69, 105, 159, 457, 463, 474, 492, 525, 811
BstMWI GCNNNNNNNGC 6 cut(s) 222, 245, 509, 520, 928, 934
BstNI CCWGG 1 cut(s) 868
BstPAI GACNNNNGTC 1 cut(s) 446
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 866
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 3 cut(s) 434, 915, 1054
BstX2I RGATCY 2 cut(s) 105, 811
BstYI RGATCY 2 cut(s) 105, 811
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 4 cut(s) 338, 755, 818, 971
BsuTUI ATCGAT 1 cut(s) 477
BtgI CCRYGG 1 cut(s) 972
BtsCI GGATG 1 cut(s) 452
Cac8I GCNNGC 2 cut(s) 360, 737
CciI TCATGA 1 cut(s) 460
CfoI GCGC 3 cut(s) 48, 514, 545
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 957
ClaI ATCGAT 1 cut(s) 477
CseI GACGC 3 cut(s) 7, 214, 549
Csp6I GTAC 1 cut(s) 346
CviAII CATG 4 cut(s) 376, 461, 764, 775
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 229, 800
DpnI GATC 9 cut(s) 71, 107, 161, 459, 465, 476, 494, 527, 813
DpnII GATC 9 cut(s) 69, 105, 159, 457, 463, 474, 492, 525, 811
DriI GACNNNNNGTC 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 816
Eam1105I GACNNNNNGTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 564
Eco147I AGGCCT 1 cut(s) 755
Eco24I GRGCYC 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 857
Eco47I GGWCC 1 cut(s) 957
Eco47III AGCGCT 1 cut(s) 513
Eco53kI GAGCTC 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 350
Eco91I GGTNACC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 503
EcoO65I GGTNACC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 866
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 606
FaeI CATG 4 cut(s) 379, 464, 767, 778
FaiI YATR 6 cut(s) 377, 462, 765, 776, 1002, 1031
FaqI GGGAC 1 cut(s) 880
FatI CATG 4 cut(s) 375, 460, 763, 774
FauI CCCGC 2 cut(s) 226, 330
FbaI TGATCA 2 cut(s) 463, 525
Fnu4HI GCNGC 3 cut(s) 423, 929, 1043
FokI GGATG 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 3 cut(s) 423, 929, 1043
FspBI CTAG 2 cut(s) 210, 515
GlaI GCGC 3 cut(s) 47, 513, 544
GluI GCNGC 3 cut(s) 423, 929, 1043
HaeII RGCGCY 1 cut(s) 515
HaeIII GGCC 4 cut(s) 338, 755, 818, 971
HapII CCGG 1 cut(s) 779
HgaI GACGC 3 cut(s) 7, 214, 549
HhaI GCGC 3 cut(s) 48, 514, 545
Hin1II CATG 4 cut(s) 379, 464, 767, 778
Hin6I GCGC 3 cut(s) 46, 512, 543
HinP1I GCGC 3 cut(s) 46, 512, 543
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 4 cut(s) 39, 118, 893, 1025
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 1 cut(s) 779
HphI GGTGA 1 cut(s) 799
Hpy166II GTNNAC 2 cut(s) 248, 589
Hpy188I TCNGA 7 cut(s) 69, 129, 457, 471, 664, 811, 918
Hpy188III TCNNGA 6 cut(s) 22, 109, 461, 506, 716, 1048
Hpy8I GTNNAC 2 cut(s) 248, 589
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 5 cut(s) 491, 694, 770, 908, 979
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 6 cut(s) 201, 248, 375, 855, 937, 1020
HpyF10VI GCNNNNNNNGC 6 cut(s) 222, 245, 509, 520, 928, 934
HpyF3I CTNAG 2 cut(s) 229, 800
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 4 cut(s) 379, 464, 767, 778
HspAI GCGC 3 cut(s) 46, 512, 543
Ksp22I TGATCA 2 cut(s) 463, 525
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 9 cut(s) 69, 105, 159, 457, 463, 474, 492, 525, 811
LmnI GCTCC 2 cut(s) 222, 500
LpnPI CCDG 9 cut(s) 68, 352, 372, 549, 749, 792, 800, 853, 880
Lsp1109I GCAGC 3 cut(s) 434, 915, 1054
LweI GCATC 3 cut(s) 469, 645, 667
MaeI CTAG 2 cut(s) 210, 515
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 85
MalI GATC 9 cut(s) 71, 107, 161, 459, 465, 476, 494, 527, 813
MboI GATC 9 cut(s) 69, 105, 159, 457, 463, 474, 492, 525, 811
MboII GAAGA 3 cut(s) 169, 484, 884
MflI RGATCY 2 cut(s) 105, 811
MhlI GDGCHC 3 cut(s) 250, 435, 505
MlsI TGGCCA 1 cut(s) 818
MluCI AATT 3 cut(s) 256, 618, 644
MluNI TGGCCA 1 cut(s) 818
MlyI GAGTC 2 cut(s) 127, 902
MmeI TCCRAC 1 cut(s) 993
Mox20I TGGCCA 1 cut(s) 818
MscI TGGCCA 1 cut(s) 818
MseI TTAA 3 cut(s) 588, 621, 1038
Msp20I TGGCCA 1 cut(s) 818
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 779
MspR9I CCNGG 1 cut(s) 868
Mva1269I GAATGC 2 cut(s) 48, 63
MvaI CCWGG 1 cut(s) 868
MwoI GCNNNNNNNGC 6 cut(s) 222, 245, 509, 520, 928, 934
NdeII GATC 9 cut(s) 69, 105, 159, 457, 463, 474, 492, 525, 811
NlaIII CATG 4 cut(s) 379, 464, 767, 778
NspV TTCGAA 1 cut(s) 608
PagI TCATGA 1 cut(s) 460
PceI AGGCCT 1 cut(s) 755
PcsI WCGNNNNNNNCGW 3 cut(s) 193, 362, 605
PctI GAATGC 2 cut(s) 48, 63
PfeI GAWTC 2 cut(s) 39, 1025
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 3 cut(s) 424, 930, 1044
PleI GAGTC 2 cut(s) 126, 901
PpsI GAGTC 2 cut(s) 126, 901
PshAI GACNNNNGTC 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 505
Psp1406I AACGTT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 866
PspEI GGTNACC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 866
PspPI GGNCC 1 cut(s) 957
PsuI RGATCY 2 cut(s) 105, 811
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SacI GAGCTC 1 cut(s) 505
SaqAI TTAA 3 cut(s) 588, 621, 1038
SatI GCNGC 3 cut(s) 423, 929, 1043
Sau3AI GATC 9 cut(s) 69, 105, 159, 457, 463, 474, 492, 525, 811
Sau96I GGNCC 1 cut(s) 957
SchI GAGTC 2 cut(s) 127, 902
ScrFI CCNGG 1 cut(s) 868
SduI GDGCHC 3 cut(s) 250, 435, 505
SfaNI GCATC 3 cut(s) 469, 645, 667
SfuI TTCGAA 1 cut(s) 608
SinI GGWCC 1 cut(s) 957
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
Sse9I AATT 3 cut(s) 256, 618, 644
SseBI AGGCCT 1 cut(s) 755
SsiI CCGC 3 cut(s) 233, 323, 950
SspMI CTAG 2 cut(s) 210, 515
SstI GAGCTC 1 cut(s) 505
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 1 cut(s) 866
StyI CCWWGG 1 cut(s) 564
TaiI ACGT 1 cut(s) 279
TaqI TCGA 9 cut(s) 21, 42, 110, 116, 477, 495, 507, 608, 653
TasI AATT 3 cut(s) 256, 618, 644
TfiI GAWTC 2 cut(s) 39, 1025
Tru1I TTAA 3 cut(s) 588, 621, 1038
Tru9I TTAA 3 cut(s) 588, 621, 1038
TseI GCWGC 3 cut(s) 422, 928, 1042
TspDTI ATGAA 2 cut(s) 752, 989
TspGWI ACGGA 2 cut(s) 735, 989
Van91I CCANNNNNTGG 1 cut(s) 148
VneI GTGCAC 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 957
XapI RAATTY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 781
XspI CTAG 2 cut(s) 210, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.