Rorug03G0253600

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001443
Physical Location & Seq
Reverse (-)
24064895 .. 24065512
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0253600.1

Sequence Viewer

Length: 618 bp
ATGGAGTCCTCTGGGTATCACAGTTTAGCCTGTAGTCCTCCTCCGGCGGAGCCAGAGATTTTCTACGTCATAGACGATATGCACATTGATAAATCAGATTGTGAGGGACCGAACGCCGACGGCCACTGTGAGAGTGTTTATCCCATCCTCGATGAAATTCTTCCTCCGGCGGAGCCAGAGATTGACGATGTGTATATAGATAATTCAGATTGTGAGGGACCAAACGCCGACGACCACTGTGAGAGTGTTTTTCCCATCCCCGATGAAATCCCAGATTCTAAATTGGAGGAATTTTTTCTGCAAATGAAATCGAACTATGAACCTTGCTATAGAGCCACACTGGATAAGGCTGCGCGAACCATCACATTCTCTCAACAACCACTCAAGTTGATGCCTGGTCCTGCTTTGAACAAATATGGCGTTCTTGAACTCAACACTTTCTTTGTGTACTTCCCCGAAAAACGAGCAACAAAGTTGAAAGCCGCATGGCCTGAGGTTGAATTAACCTTAAATGCCTACTCCCTTTCATGCGATCTGAATCTGGCCAAGTGTTGCATGCAAGTCTCAACAACCCCATCGCTTAATGATCCATGTATGATTGGAAAGGCTAGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0050896 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box

Protein Analysis

205

Amino Acids

22.88

Weight (kDa)

4.34

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 146 - 204 4.2e-08 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 355
AciI CCGC 3 cut(s) 47, 170, 483
AclWI GGATC 1 cut(s) 581
AcoI YGGCCR 2 cut(s) 121, 543
AcsI RAATTY 2 cut(s) 156, 290
AfaI GTAC 1 cut(s) 449
AgsI TTSAA 4 cut(s) 409, 428, 478, 500
AjnI CCWGG 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 568
AlwI GGATC 1 cut(s) 581
AoxI GGCC 3 cut(s) 121, 488, 543
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 2 cut(s) 156, 290
Asp700I GAANNNNTTC 2 cut(s) 159, 294
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 3 cut(s) 107, 218, 398
AvaII GGWCC 3 cut(s) 107, 218, 398
AxyI CCTNAGG 1 cut(s) 492
BalI TGGCCA 1 cut(s) 545
BbvI GCAGC 1 cut(s) 337
BccI CCATC 4 cut(s) 152, 263, 368, 583
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 568
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 2 cut(s) 31, 328
BisI GCNGC 2 cut(s) 351, 483
BlsI GCNGC 2 cut(s) 352, 484
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 3 cut(s) 107, 218, 398
BmgT120I GGNCC 3 cut(s) 107, 218, 398
BmiI GGNNCC 4 cut(s) 51, 108, 174, 219
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 537
Bse1I ACTGG 1 cut(s) 345
Bse21I CCTNAGG 1 cut(s) 492
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 144, 255
BseJI GATNNNNATC 1 cut(s) 537
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 1 cut(s) 345
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 3 cut(s) 123, 490, 545
BsiSI CCGG 2 cut(s) 44, 167
BslFI GGGAC 2 cut(s) 120, 231
BsmAI GTCTC 1 cut(s) 568
BsmFI GGGAC 2 cut(s) 120, 231
BsnI GGCC 3 cut(s) 123, 490, 545
Bsp143I GATC 2 cut(s) 532, 586
BspACI CCGC 3 cut(s) 47, 170, 483
BspANI GGCC 3 cut(s) 123, 490, 545
BspCNI CTCAG 1 cut(s) 484
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 4 cut(s) 51, 108, 174, 219
BspPI GGATC 1 cut(s) 581
BsrI ACTGG 1 cut(s) 345
BssMI GATC 2 cut(s) 532, 586
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 23, 128, 239
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 2 cut(s) 144, 255
BstFNI CGCG 1 cut(s) 355
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 2 cut(s) 535, 589
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 2 cut(s) 532, 586
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 2 cut(s) 31, 328
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 492
BsuRI GGCC 3 cut(s) 123, 490, 545
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 2 cut(s) 144, 255
BtsIMutI CAGTG 3 cut(s) 124, 235, 338
Cac8I GCNNGC 1 cut(s) 557
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 107, 218, 398
Csp6I GTAC 1 cut(s) 448
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 4 cut(s) 486, 528, 556, 591
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 1 cut(s) 492
DpnI GATC 2 cut(s) 534, 588
DpnII GATC 2 cut(s) 532, 586
EaeI YGGCCR 2 cut(s) 121, 543
EciI GGCGGA 2 cut(s) 62, 185
Eco47I GGWCC 3 cut(s) 107, 218, 398
Eco81I CCTNAGG 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 394
FaeI CATG 4 cut(s) 489, 531, 559, 594
FaqI GGGAC 2 cut(s) 120, 231
FatI CATG 4 cut(s) 485, 527, 555, 590
Fnu4HI GCNGC 2 cut(s) 351, 483
FokI GGATG 2 cut(s) 131, 242
Fsp4HI GCNGC 2 cut(s) 351, 483
FspBI CTAG 1 cut(s) 609
GlaI GCGC 1 cut(s) 354
GluI GCNGC 2 cut(s) 351, 483
HaeIII GGCC 3 cut(s) 123, 490, 545
HapII CCGG 2 cut(s) 44, 167
HhaI GCGC 1 cut(s) 355
Hin1II CATG 4 cut(s) 489, 531, 559, 594
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 3 cut(s) 5, 275, 538
HpaII CCGG 2 cut(s) 44, 167
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 3 cut(s) 97, 208, 537
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 2 cut(s) 122, 233
HpyCH4III ACNGT 3 cut(s) 23, 128, 239
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 4 cut(s) 82, 301, 555, 559
HpyF3I CTNAG 1 cut(s) 492
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 4 cut(s) 489, 531, 559, 594
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 2 cut(s) 532, 586
LmnI GCTCC 2 cut(s) 49, 172
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 381
MaeI CTAG 1 cut(s) 609
MaeII ACGT 1 cut(s) 66
MalI GATC 2 cut(s) 534, 588
MboI GATC 2 cut(s) 532, 586
MboII GAAGA 1 cut(s) 152
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 5 cut(s) 156, 202, 281, 290, 500
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 9 cut(s) 19, 48, 51, 97, 158, 174, 208, 280, 487
Mox20I TGGCCA 1 cut(s) 545
MroXI GAANNNNTTC 2 cut(s) 159, 294
MscI TGGCCA 1 cut(s) 545
MseI TTAA 3 cut(s) 503, 509, 582
Msp20I TGGCCA 1 cut(s) 545
MspI CCGG 2 cut(s) 44, 167
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 1 cut(s) 355
NdeII GATC 2 cut(s) 532, 586
NlaIII CATG 4 cut(s) 489, 531, 559, 594
NlaIV GGNNCC 4 cut(s) 51, 108, 174, 219
NspI RCATGY 1 cut(s) 559
PaeI GCATGC 1 cut(s) 559
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdmI GAANNNNTTC 2 cut(s) 159, 294
PfeI GAWTC 2 cut(s) 275, 538
PkrI GCNGC 2 cut(s) 352, 484
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 4 cut(s) 51, 108, 174, 219
PspPI GGNCC 3 cut(s) 107, 218, 398
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SaqAI TTAA 3 cut(s) 503, 509, 582
SatI GCNGC 2 cut(s) 351, 483
Sau3AI GATC 2 cut(s) 532, 586
Sau96I GGNCC 3 cut(s) 107, 218, 398
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 396
SetI ASST 4 cut(s) 69, 325, 498, 509
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 2 cut(s) 31, 328
SinI GGWCC 3 cut(s) 107, 218, 398
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 559
Sse9I AATT 5 cut(s) 156, 202, 281, 290, 500
SsiI CCGC 3 cut(s) 47, 170, 483
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 23, 128, 239
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 150, 311
TaqII GACCGA 1 cut(s) 124
TasI AATT 5 cut(s) 156, 202, 281, 290, 500
TatI WGTACW 1 cut(s) 447
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 2 cut(s) 275, 538
Tru1I TTAA 3 cut(s) 503, 509, 582
Tru9I TTAA 3 cut(s) 503, 509, 582
TscAI CASTG 3 cut(s) 131, 242, 345
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 5 cut(s) 168, 279, 320, 333, 516
TspRI CASTG 3 cut(s) 131, 242, 345
VpaK11BI GGWCC 3 cut(s) 107, 218, 398
XapI RAATTY 2 cut(s) 156, 290
XceI RCATGY 1 cut(s) 559
XmnI GAANNNNTTC 2 cut(s) 159, 294
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.