Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003156.1

Orthogroup ID

OG0001443

Physical Location & Seq

Genomic Coordinates Forward (+)

89778 .. 90476

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003156.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgattttgtcgtggaggagaagaagggccagcaagtatgccaacaggaaggagttttctggcgagactctagacatggggatggaggagatcgtgattccatcccacttccggtgccctattactctggacctcatgaaagatccggtcaccttgtcgacggggatgacctacgacaggtccagcatcgacgcctggatcgagaaagggaacaagacctgcccggtaaccaatcaagttctggcaacgttcgaccaaatccccaaccacgcgctacgtaagatgatccaagactggtgcgtcgagaaccgctctcacggcgtggaacgcatccccacgcctcggattcctgtgtctgcgtacgaggttactagggtttgtcagagaatcatggccgcgactcaacgcggcgattacaacaagtgtctagagttggtggccaaggtcagaggttggggaaaagacagcgagcgtaacaagaagtgtatcgtggagaacagaatgggctgctgcttgtccgccactttcgagttcttcgtcggaaatgaggaaactacgttgttggaggagatcttggccgtgctgacatggatgtttccgataggtgaagaaggccaatcaaagcttggatctgcaattgctacgaaatcacgaattgaaaatctcaaacaagcacaaagccaaatcactaactgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0050896 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

232

Amino Acids

26.41

Weight (kDa)

8.56

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37490
fragaria_vesca	FvH4_1g29930 FvH4_4g33190 FvH4_5g17730
malus_domestica	MD06G1232800.v1.1 MD09G1266300.v1.1 MD09G1266400.v1.1 MD13G1017300.v1.1 MD14G1239800.v1.1 MD16G1015400.v1.1 MD17G1262600.v1.1
prunus_persica	Prupe.1G336200_v2.0.a1 Prupe.3G164200_v2.0.a1 Prupe.5G237400_v2.0.a1
pyrus_communis	pycom06g20780 pycom09g17950 pycom09g17960 pycom13g01490 pycom14g20140 pycom16g01430 pycom17g26260
rosa_chinensis	RchiOBHm_Chr3g0492391 RchiOBHm_Chr4g0442301 RchiOBHm_Chr7g0177891
rosa_laevigata	RLG00000005493 RLG00000006019 RLG00000022770
rosa_multiflora	Rmu_sc0000124.1_g000056 Rmu_sc0003156.1_g000014 Rmu_sc0003156.1_g000016 Rmu_sc0006214.1_g000002 Rmu_sc0038448.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275460 Rroxscaffold_5G00383160 Rroxscaffold_6G00392340
rosa_rugosa	Rorug03G0253600 Rorug04G0340300 Rorug06G0410800
rosa_samantha	Rh3AG303800 Rh3BG339800 Rh3CG337000 Rh3DG338900 Rh4BG405300 Rh4CG420500 Rh4DG398600 Rh7AG010000 Rh7BG010100 Rh7CG010200 Rh7DG010100
rosa_wichuraiana	Rw3G026790 Rw4G033840 Rw7G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	3 cut(s)	272, 398, 408
AciI	CCGC	4 cut(s)	310, 396, 408, 519
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	4 cut(s)	137, 206, 280, 637
AcoI	YGGCCR	3 cut(s)	393, 438, 576
AcyI	GRCGYC	1 cut(s)	192
AdeI	CACNNNGTG	1 cut(s)	322
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	111, 177, 342
AgsI	TTSAA	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	1 cut(s)	625
AluI	AGCT	1 cut(s)	625
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	4 cut(s)	137, 206, 280, 637
AoxI	GGCC	5 cut(s)	27, 393, 438, 576, 613
ApeKI	GCWGC	2 cut(s)	507, 510
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	27, 130, 180
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	142, 617
AvaII	GGWCC	2 cut(s)	130, 180
BaeGI	GKGCMC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	494, 497
BccI	CCATC	2 cut(s)	76, 109
BceAI	ACGGC	2 cut(s)	334, 563
BciT130I	CCWGG	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	3 cut(s)	71, 372, 428
BfuAI	ACCTGC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	570
BisI	GCNGC	4 cut(s)	396, 409, 508, 511
BlsI	GCNGC	4 cut(s)	397, 410, 509, 512
Bme1390I	CCNGG	2 cut(s)	196, 224
Bme18I	GGWCC	2 cut(s)	130, 180
BmgT120I	GGNCC	3 cut(s)	27, 130, 180
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	196, 224
BmsI	GCATC	2 cut(s)	195, 339
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpuMI	CCSGG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	341, 441
BsaWI	WCCGGW	2 cut(s)	111, 145
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 177, 342
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	341, 441
BseGI	GGATG	5 cut(s)	87, 101, 171, 330, 597
BseLI	CCNNNNNNNGG	3 cut(s)	111, 177, 342
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	3 cut(s)	31, 101, 581
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	494, 497
Bsh1236I	CGCG	3 cut(s)	272, 398, 408
BshFI	GGCC	5 cut(s)	29, 395, 440, 578, 615
BshNI	GGYRCC	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	112, 146, 224
BsiWI	CGTACG	1 cut(s)	360
BslI	CCNNNNNNNGG	3 cut(s)	111, 177, 342
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	5 cut(s)	29, 395, 440, 578, 615
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	6 cut(s)	90, 142, 198, 285, 570, 629
BspACI	CCGC	4 cut(s)	310, 396, 408, 519
BspANI	GGCC	5 cut(s)	29, 395, 440, 578, 615
BspFNI	CGCG	3 cut(s)	272, 398, 408
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	4 cut(s)	137, 206, 280, 637
BspT107I	GGYRCC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	341, 441
BssMI	GATC	6 cut(s)	90, 142, 198, 285, 570, 629
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	31, 470
BstEII	GGTNACC	2 cut(s)	148, 226
BstENI	CCTNNNNNAGG	1 cut(s)	175
BstF5I	GGATG	5 cut(s)	87, 101, 171, 330, 597
BstFNI	CGCG	3 cut(s)	272, 398, 408
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	6 cut(s)	93, 145, 201, 288, 573, 632
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	6 cut(s)	90, 142, 198, 285, 570, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 327
BstNI	CCWGG	1 cut(s)	196
BstPI	GGTNACC	2 cut(s)	148, 226
BstSCI	CCNGG	2 cut(s)	194, 222
BstSLI	GKGCMC	1 cut(s)	119
BstSNI	TACGTA	1 cut(s)	278
BstUI	CGCG	3 cut(s)	272, 398, 408
BstV1I	GCAGC	2 cut(s)	494, 497
BstX2I	RGATCY	3 cut(s)	142, 570, 629
BstYI	RGATCY	3 cut(s)	142, 570, 629
BsuRI	GGCC	5 cut(s)	29, 395, 440, 578, 615
BtsCI	GGATG	5 cut(s)	87, 101, 171, 330, 597
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	31, 470
CciI	TCATGA	1 cut(s)	135
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	3 cut(s)	27, 130, 180
CseI	GACGC	2 cut(s)	200, 289
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	4 cut(s)	76, 136, 391, 588
CviJI	RGCY	8 cut(s)	29, 395, 440, 507, 578, 615, 625, 681
CviKI_1	RGCY	8 cut(s)	29, 395, 440, 507, 578, 615, 625, 681
CviQI	GTAC	1 cut(s)	361
DpnI	GATC	6 cut(s)	92, 144, 200, 287, 572, 631
DpnII	GATC	6 cut(s)	90, 142, 198, 285, 570, 629
DraIII	CACNNNGTG	1 cut(s)	322
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	3 cut(s)	393, 438, 576
EciI	GGCGGA	1 cut(s)	508
Eco105I	TACGTA	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	2 cut(s)	130, 180
Eco91I	GGTNACC	2 cut(s)	148, 226
EcoNI	CCTNNNNNAGG	1 cut(s)	175
EcoO65I	GGTNACC	2 cut(s)	148, 226
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	4 cut(s)	79, 139, 394, 591
FaiI	YATR	5 cut(s)	39, 77, 137, 392, 589
FatI	CATG	4 cut(s)	75, 135, 390, 587
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	4 cut(s)	396, 409, 508, 511
FokI	GGATG	5 cut(s)	88, 94, 178, 317, 604
Fsp4HI	GCNGC	4 cut(s)	396, 409, 508, 511
FspBI	CTAG	3 cut(s)	71, 372, 428
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	4 cut(s)	396, 409, 508, 511
HaeIII	GGCC	5 cut(s)	29, 395, 440, 578, 615
HapII	CCGG	3 cut(s)	112, 146, 224
HgaI	GACGC	2 cut(s)	200, 289
HhaI	GCGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	79, 139, 394, 591
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	5 cut(s)	67, 97, 346, 387, 400
HpaII	CCGG	3 cut(s)	112, 146, 224
HphI	GGTGA	2 cut(s)	142, 617
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	5 cut(s)	345, 384, 449, 542, 600
Hpy188III	TCNNGA	8 cut(s)	71, 94, 128, 136, 202, 304, 428, 651
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	4 cut(s)	163, 194, 305, 542
HpyAV	CCTTC	3 cut(s)	18, 43, 605
HpyCH4IV	ACGT	3 cut(s)	248, 277, 557
HpyCH4V	TGCA	1 cut(s)	635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 327
HpySE526I	ACGT	3 cut(s)	248, 277, 557
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	79, 139, 394, 591
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	6 cut(s)	90, 142, 198, 285, 570, 629
Lsp1109I	GCAGC	2 cut(s)	494, 497
LweI	GCATC	2 cut(s)	195, 339
MaeI	CTAG	3 cut(s)	71, 372, 428
MaeII	ACGT	3 cut(s)	248, 277, 557
MaeIII	GTNAC	4 cut(s)	148, 226, 367, 473
MalI	GATC	6 cut(s)	92, 144, 200, 287, 572, 631
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	6 cut(s)	90, 142, 198, 285, 570, 629
MboII	GAAGA	3 cut(s)	33, 526, 620
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	3 cut(s)	142, 570, 629
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	2 cut(s)	636, 654
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	2 cut(s)	61, 394
MmeI	TCCRAC	2 cut(s)	520, 543
MnlI	CCTC	8 cut(s)	9, 79, 143, 351, 358, 443, 541, 559
Mox20I	TGGCCA	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	3 cut(s)	112, 146, 224
MspR9I	CCNGG	2 cut(s)	196, 224
MunI	CAATTG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	3 cut(s)	272, 398, 408
MwoI	GCNNNNNNNGC	2 cut(s)	318, 327
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	6 cut(s)	90, 142, 198, 285, 570, 629
NlaIII	CATG	4 cut(s)	79, 139, 394, 591
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	148
PagI	TCATGA	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 534
PfeI	GAWTC	3 cut(s)	97, 346, 387
Pfl23II	CGTACG	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	397, 410, 509, 512
PleI	GAGTC	2 cut(s)	61, 394
PpsI	GAGTC	2 cut(s)	61, 394
Ppu21I	YACGTR	1 cut(s)	278
Psp1406I	AACGTT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	194
PspEI	GGTNACC	2 cut(s)	148, 226
PspGI	CCWGG	1 cut(s)	194
PspLI	CGTACG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	3 cut(s)	27, 130, 180
PsuI	RGATCY	3 cut(s)	142, 570, 629
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	80
SalI	GTCGAC	1 cut(s)	157
SatI	GCNGC	4 cut(s)	396, 409, 508, 511
Sau3AI	GATC	6 cut(s)	90, 142, 198, 285, 570, 629
Sau96I	GGNCC	3 cut(s)	27, 130, 180
SchI	GAGTC	2 cut(s)	61, 394
ScrFI	CCNGG	2 cut(s)	196, 224
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	195, 339
SinI	GGWCC	2 cut(s)	130, 180
SmiMI	CAYNNNNRTG	1 cut(s)	80
SnaBI	TACGTA	1 cut(s)	278
Sse9I	AATT	2 cut(s)	636, 654
SsiI	CCGC	4 cut(s)	310, 396, 408, 519
SspMI	CTAG	3 cut(s)	71, 372, 428
StyD4I	CCNGG	2 cut(s)	194, 222
StyI	CCWWGG	1 cut(s)	441
TaiI	ACGT	3 cut(s)	251, 280, 560
TaqI	TCGA	6 cut(s)	158, 189, 201, 252, 303, 528
TasI	AATT	2 cut(s)	636, 654
TauI	GCSGC	2 cut(s)	398, 411
TfiI	GAWTC	3 cut(s)	97, 346, 387
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	507, 510
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	152
VpaK11BI	GGWCC	2 cut(s)	130, 180
XagI	CCTNNNNNAGG	1 cut(s)	175
XbaI	TCTAGA	2 cut(s)	70, 427
XcmI	CCANNNNNNNNNTGG	2 cut(s)	238, 623
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	3 cut(s)	71, 372, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.