Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001443

Physical Location & Seq

Genomic Coordinates Forward (+)

18544480 .. 18549798

Gene Structure 5319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17950.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGACTGGACCCACACCCCATTCCTACCACCCAATCCACACCCCCCACCTCTCATCAAATTCCCACATTCCTCACAACCAAAACAACACAAATACTCAAAGCAAATTCTCATACATTTGTGATTTTTCCATTAATTCGAAGCAACAAACAATGATCATTTCTTGGAGAAGAAGGAAGGCCGGCCGTAAGACCGAAAACAAGAAGCAATTTTGTAATTTGGACATGGACGTGGAGGAGATCGCGATTCCGACGCATTTCCGGTGCCCGATTTCCCTCGACTTGATGAAAGATCCGGTGACACTTCCGACAGGAATGACGTACGACAGGTCGAGCATCGAGAAGTGGATCGAGACTGGCAACAGTACGTGTCCGGTGACTAATCAGGAACTCATGAGTTTTGACCAGATTCCGAACCATGCACTACGTCGGATGATCCAAGATTGGTGCGTGGAGAATAGGTCTTATGGCATCGAGCGGATTCCAACGCCGCGGATCCCTGTGATTCCCTACGAGGTTTCGAGGATTCGCGAGAGAGTCATGGGAGCAGCGCGGCGTTTGGATGAGAAGAAGTGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0050896 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

194

Amino Acids

22.41

Weight (kDa)

9.1

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37490
fragaria_vesca	FvH4_1g29930 FvH4_4g33190 FvH4_5g17730
malus_domestica	MD06G1232800.v1.1 MD09G1266300.v1.1 MD09G1266400.v1.1 MD13G1017300.v1.1 MD14G1239800.v1.1 MD16G1015400.v1.1 MD17G1262600.v1.1
prunus_persica	Prupe.1G336200_v2.0.a1 Prupe.3G164200_v2.0.a1 Prupe.5G237400_v2.0.a1
pyrus_communis	pycom06g20780 pycom09g17950 pycom09g17960 pycom13g01490 pycom14g20140 pycom16g01430 pycom17g26260
rosa_chinensis	RchiOBHm_Chr3g0492391 RchiOBHm_Chr4g0442301 RchiOBHm_Chr7g0177891
rosa_laevigata	RLG00000005493 RLG00000006019 RLG00000022770
rosa_multiflora	Rmu_sc0000124.1_g000056 Rmu_sc0003156.1_g000014 Rmu_sc0003156.1_g000016 Rmu_sc0006214.1_g000002 Rmu_sc0038448.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275460 Rroxscaffold_5G00383160 Rroxscaffold_6G00392340
rosa_rugosa	Rorug03G0253600 Rorug04G0340300 Rorug06G0410800
rosa_samantha	Rh3AG303800 Rh3BG339800 Rh3CG337000 Rh3DG338900 Rh4BG405300 Rh4CG420500 Rh4DG398600 Rh7AG010000 Rh7BG010100 Rh7CG010200 Rh7DG010100
rosa_wichuraiana	Rw3G026790 Rw4G033840 Rw7G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	478
AccII	CGCG	4 cut(s)	245, 493, 531, 553
AciI	CCGC	4 cut(s)	478, 491, 493, 553
AclWI	GGATC	5 cut(s)	287, 356, 430, 490, 503
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	2 cut(s)	61, 107
AfaI	GTAC	2 cut(s)	323, 367
AflIII	ACRYGT	1 cut(s)	368
AjiI	CACGTC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	5 cut(s)	287, 356, 430, 490, 503
AoxI	GGCC	2 cut(s)	180, 184
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	2 cut(s)	61, 107
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	310, 388
AsuII	TTCGAA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	560
BceAI	ACGGC	1 cut(s)	171
BclI	TGATCA	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	347
BisI	GCNGC	3 cut(s)	491, 549, 554
BlsI	GCNGC	3 cut(s)	492, 550, 555
Bme18I	GGWCC	1 cut(s)	11
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	3 cut(s)	13, 266, 497
BmsI	GCATC	2 cut(s)	345, 480
Bpu14I	TTCGAA	1 cut(s)	140
BsaAI	YACGTR	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	3 cut(s)	261, 295, 373
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	13, 361
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	2 cut(s)	438, 568
BseNI	ACTGG	2 cut(s)	13, 361
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	269
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	4 cut(s)	245, 493, 531, 553
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	182, 186
BshNI	GGYRCC	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	4 cut(s)	183, 262, 296, 374
BsiWI	CGTACG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	182, 186
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	6 cut(s)	156, 240, 292, 348, 435, 495
Bsp68I	TCGCGA	2 cut(s)	245, 531
BspACI	CCGC	4 cut(s)	478, 491, 493, 553
BspANI	GGCC	2 cut(s)	182, 186
BspFNI	CGCG	4 cut(s)	245, 493, 531, 553
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	3 cut(s)	13, 266, 497
BspPI	GGATC	5 cut(s)	287, 356, 430, 490, 503
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	13, 361
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	6 cut(s)	156, 240, 292, 348, 435, 495
Bst4CI	ACNGT	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	369
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	491
BstF5I	GGATG	2 cut(s)	438, 568
BstFNI	CGCG	4 cut(s)	245, 493, 531, 553
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	6 cut(s)	159, 243, 295, 351, 438, 498
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	6 cut(s)	156, 240, 292, 348, 435, 495
BstMCI	CGRYCG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	4 cut(s)	245, 493, 531, 553
BstV1I	GCAGC	1 cut(s)	560
BstX2I	RGATCY	2 cut(s)	292, 495
BstYI	RGATCY	2 cut(s)	292, 495
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	182, 186
BtgI	CCRYGG	1 cut(s)	491
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	438, 568
BtuMI	TCGCGA	2 cut(s)	245, 531
Cac8I	GCNNGC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	11
Cfr42I	CCGCGG	1 cut(s)	494
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	322, 366
CviAII	CATG	4 cut(s)	226, 394, 419, 541
CviJI	RGCY	2 cut(s)	182, 186
CviKI_1	RGCY	2 cut(s)	182, 186
CviQI	GTAC	2 cut(s)	322, 366
DpnI	GATC	6 cut(s)	158, 242, 294, 350, 437, 497
DpnII	GATC	6 cut(s)	156, 240, 292, 348, 435, 495
EaeI	YGGCCR	1 cut(s)	184
EagI	CGGCCG	1 cut(s)	184
EclXI	CGGCCG	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	11
Eco52I	CGGCCG	1 cut(s)	184
FaeI	CATG	4 cut(s)	229, 397, 422, 544
FaiI	YATR	7 cut(s)	115, 227, 395, 420, 468, 542, 580
FatI	CATG	4 cut(s)	225, 393, 418, 540
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	491, 549, 554
FokI	GGATG	2 cut(s)	445, 575
FseI	GGCCGGCC	1 cut(s)	186
Fsp4HI	GCNGC	3 cut(s)	491, 549, 554
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	3 cut(s)	491, 549, 554
HaeIII	GGCC	2 cut(s)	182, 186
HapII	CCGG	4 cut(s)	183, 262, 296, 374
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	4 cut(s)	229, 397, 422, 544
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HinfI	GANTC	6 cut(s)	247, 409, 481, 505, 526, 537
HpaII	CCGG	4 cut(s)	183, 262, 296, 374
HphI	GGTGA	2 cut(s)	310, 388
Hpy188I	TCNGA	4 cut(s)	252, 309, 414, 432
Hpy188III	TCNNGA	6 cut(s)	244, 340, 352, 386, 394, 530
Hpy99I	CGWCG	2 cut(s)	256, 432
HpyAV	CCTTC	2 cut(s)	168, 172
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	4 cut(s)	231, 320, 368, 427
HpyCH4V	TGCA	1 cut(s)	422
HpySE526I	ACGT	4 cut(s)	231, 320, 368, 427
Hsp92II	CATG	4 cut(s)	229, 397, 422, 544
HspAI	GCGC	1 cut(s)	551
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	156
KspI	CCGCGG	1 cut(s)	494
Kzo9I	GATC	6 cut(s)	156, 240, 292, 348, 435, 495
LmnI	GCTCC	1 cut(s)	545
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	2 cut(s)	345, 480
MaeII	ACGT	4 cut(s)	231, 320, 368, 427
MaeIII	GTNAC	2 cut(s)	298, 376
MalI	GATC	6 cut(s)	158, 242, 294, 350, 437, 497
MbiI	CCGCTC	1 cut(s)	478
MboI	GATC	6 cut(s)	156, 240, 292, 348, 435, 495
MboII	GAAGA	2 cut(s)	183, 580
MflI	RGATCY	2 cut(s)	292, 495
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	5 cut(s)	61, 107, 136, 209, 217
MlyI	GAGTC	1 cut(s)	546
MmeI	TCCRAC	4 cut(s)	275, 332, 410, 509
MnlI	CCTC	6 cut(s)	62, 84, 229, 287, 508, 516
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	4 cut(s)	183, 262, 296, 374
MvnI	CGCG	4 cut(s)	245, 493, 531, 553
NaeI	GCCGGC	1 cut(s)	184
NdeII	GATC	6 cut(s)	156, 240, 292, 348, 435, 495
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	4 cut(s)	229, 397, 422, 544
NlaIV	GGNNCC	3 cut(s)	13, 266, 497
NmuCI	GTSAC	2 cut(s)	298, 376
NruI	TCGCGA	2 cut(s)	245, 531
NspV	TTCGAA	1 cut(s)	140
PagI	TCATGA	1 cut(s)	393
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	5 cut(s)	247, 409, 481, 505, 526
Pfl23II	CGTACG	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	492, 550, 555
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
Ppu21I	YACGTR	1 cut(s)	369
PshBI	ATTAAT	1 cut(s)	135
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	13, 266, 497
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	292, 495
RigI	GGCCGGCC	1 cut(s)	186
RruI	TCGCGA	2 cut(s)	245, 531
RsaI	GTAC	2 cut(s)	323, 367
RsaNI	GTAC	2 cut(s)	322, 366
RseI	CAYNNNNRTG	1 cut(s)	230
SacII	CCGCGG	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	491, 549, 554
Sau3AI	GATC	6 cut(s)	156, 240, 292, 348, 435, 495
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	546
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	8 cut(s)	54, 234, 323, 332, 371, 430, 464, 519
SfaNI	GCATC	2 cut(s)	345, 480
Sfr303I	CCGCGG	1 cut(s)	494
SfuI	TTCGAA	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	5 cut(s)	61, 107, 136, 209, 217
SsiI	CCGC	4 cut(s)	478, 491, 493, 553
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	4 cut(s)	234, 323, 371, 430
TaqI	TCGA	7 cut(s)	140, 279, 332, 339, 351, 474, 521
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	5 cut(s)	61, 107, 136, 209, 217
TauI	GCSGC	2 cut(s)	493, 556
TfiI	GAWTC	5 cut(s)	247, 409, 481, 505, 526
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	298, 376
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	2 cut(s)	298, 376
TspDTI	ATGAA	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	2 cut(s)	61, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.