AT5G61910

calcium-dependent phospholipid binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
24855621 .. 24864172
8552 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61910.5

Sequence Viewer

Length: 2217 bp
ATGGAGACGGAGATGGATTTCTCAGATGGTGAACAAACTAATGGTAATTCACATGTTACTGCCTCCCAATACTTTGCTCCTCCGGGTTATAATAGAAGTCTTGTGGCTGCTTATGGGAATGGAAACACAACCATTGGATTAGAAAAAGGAATAGAAAGGAGACTAGATCATCATGAGCAACTACCTGGTTATATCTTTATGTGTAATGGGAGAACGAAAACCGATTGCTACCGTTACCGTGTTTTCGGGATTCCAAGAGGAGGAAAAGACGTTGTTGAGAGTATAAAGCCAGGCATGAAGCTTTTCCTCTATGACTTTGAGAAGAGACTTCTTTATGGTGTGTATGAAGCTACTGTTGGTGGCAGGTTGGATATAGAACCTGAAGCTTTTGAAGGGAAATATCCAGCTCAAGTTGGATTTAGAATTGTCATGAACTGTTTACCCTTGACAGAAAACACTTTCAAGTCTGCTATCTATGAAAATTACAAAGGTTCCAAATTTAAGCAAGAACTTTCTCCTCACCAAGTTATGTCTCTGTTATCATTGTTTCGTTCATTTACGTCTCCAGAACTCGATTTGTTGCCTCATAGGTTGGCTTCCAGAGCTTCAGCACCTAGGACTCTATCGTTTGAGGAAAGGTTCATAGCGGCTACACATCTTAGAAATGCTTCATCGGTTTTAGATCCTCTGTCTGCTCGTCATGTAGAACCACGACTTGGCTCTGTTATGGCCCATCAGCCTGTTCCCCGCACATCTCTGCTTCAACATAGTTACTTTAGACAAGACGACTACACGACCCCACCTAGAGAAAGTCTGTCAAATTTGAATCAGCCTTATTATCCTACAGAAGCTCGGCAACTACGGTTGCTCGGAGACCCTTCTCGCTCAGATTCTCCTCGGTCCGAACCTCCGCGGTCATCTATTCAGGATCCTCAACTCAAATACCTCACCATTTTATCTAATATTCGGAGATATGGATCTGCATCAGATCGCTTGGCCTCAGAAAATGAATATCATCCGGCAACACCATCAGAGAAGGACCAGTTTGCTGTACCTTATTCTGATAATAAAAATTACCCTTCGACTTTATCTGGGAGTGAGCATCCTTCTGCTTCTGCAGCTAATGGGAGTGTGTATAGAAGTGAGTTCTATAATTCAGCATCACAAAAGGAAGGGGAAGCTAGTCAGCAGCATGAGATCCCTGCTGGGACTTACCATCACCCAGAAGCATCAACAGTTTCCAATACTACAAAGTCCATGCAACCAGATATGCAGGCAGTTAGTGTTGCTCAATCTCATACCGAGACAGCTGGCTATCCTACACCGGCACATGGTGAAGCTTCACAACCACCTGCTGGAGCAATTGGTTACACACACCAACCTCAAAGTGTAGCGGGTAATTATAGCACGCATTCACAGCCTGGGAATGTGGAAGAAAGTACACAATCATATGCTGGAACAGATAGTTACTCACAACAGCAATATTATGCAGCTATGGGGCCTACTACTCAACTCCATGCTGGTGGATATATTCAAAAACCTCATGAAATTGGGTACTCTCAGCAACCTCATGATGCGGCAACCGGGTACTCTCAGCAACCTCATGATGCAGCAACCGGGTACTCTCAGCAACCTCATGATGCAGCAACCGGGTACTCTCAGCAACCTCATGCCGCATCAACCGGGTACTCTCAGCAAACCTATGCTGCAGCAACCGGGTACACTCAGCAACCCCATGCGGCGGCAGCCGGGTACACTCAGCAACCCCATGCGGCGGCAACCGGGTATTCTCAGCAACCCCATGCTGCAGCTACCGCGCACGCTCAGCAACCCTATGCTGCAGCGACCGCGCACGCTCAGCAACTCCATGCTGTAGCTACTGGGTATGCTCTGCAACTCCATGCTGCAGCTACCGGGTACGCTCAGCAACCCCATGCTGCCGCAACTGGGTATGCTTTGCAACCACATGCTCAAGCTGTTGAATACACAATGCAACCACATGCTCAAGCTGTTGGCTACATGCCGCAATACCATGCTCACGCTGTTGTATACAGTCAACAAGGTGTGACGCAAGGTTCTGTACCAAGGGCTCCTGGGACAACTGATTGTAATGCTGCAAACCAGGCATATTCTGCAACAGGAGATTGGAATGCAGTGCATCAGTCTTATTACCCTCAGACAGCAGATGCAACCACAACGTATTATCAAACATCTTAA

Protein Analysis

738

Amino Acids

80.52

Weight (kDa)

6.23

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 63 - 183 2.7e-47 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AarI CACCTGC 1 cut(s) 1360
Acc36I ACCTGC 2 cut(s) 354, 1360
AccB7I CCANNNNNTGG 2 cut(s) 716, 1355
AccI GTMKAC 1 cut(s) 2049
AccII CGCG 3 cut(s) 913, 1817, 1850
AclWI GGATC 5 cut(s) 677, 923, 936, 985, 1192
AcsI RAATTY 2 cut(s) 497, 820
AcuI CTGAAG 2 cut(s) 402, 591
AdeI CACNNNGTG 1 cut(s) 1334
AfiI CCNNNNNNNGG 7 cut(s) 260, 716, 1331, 1355, 1741, 1774, 1947
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 6 cut(s) 392, 463, 764, 826, 1535, 1982
AjnI CCWGG 5 cut(s) 184, 289, 1420, 2092, 2121
AjuI GAANNNNNNNTTGG 4 cut(s) 339, 371, 699, 731
Alw26I GTCTC 6 cut(s) 154, 319, 537, 567, 867, 1298
AlwI GGATC 5 cut(s) 677, 923, 936, 985, 1192
AoxI GGCC 3 cut(s) 729, 996, 1499
ApoI RAATTY 2 cut(s) 497, 820
Asp700I GAANNNNTTC 2 cut(s) 302, 667
AspA2I CCTAGG 1 cut(s) 614
AspLEI GCGC 2 cut(s) 1819, 1852
AspS9I GGNCC 4 cut(s) 730, 900, 1039, 1499
AsuC2I CCSGG 9 cut(s) 84, 1585, 1618, 1651, 1684, 1717, 1750, 1783, 1915
AsuHPI GGTGA 5 cut(s) 41, 512, 940, 1211, 1346
AvaII GGWCC 2 cut(s) 900, 1039
AvrII CCTAGG 1 cut(s) 614
BamHI GGATCC 1 cut(s) 928
BanII GRGCYC 1 cut(s) 2092
BccI CCATC 5 cut(s) 7, 20, 741, 1036, 1224
BciT130I CCWGG 5 cut(s) 186, 291, 1422, 2094, 2123
BcnI CCSGG 9 cut(s) 84, 1585, 1618, 1651, 1684, 1717, 1750, 1783, 1915
BcoDI GTCTC 6 cut(s) 154, 319, 537, 567, 867, 1298
BfaI CTAG 4 cut(s) 164, 615, 804, 1182
BfmI CTRYAG 7 cut(s) 843, 1116, 1707, 1806, 1839, 1872, 1905
BfuAI ACCTGC 2 cut(s) 354, 1360
BlnI CCTAGG 1 cut(s) 614
BlpI GCTNAGC 3 cut(s) 1824, 1857, 1923
Bme18I GGWCC 2 cut(s) 900, 1039
BmgT120I GGNCC 4 cut(s) 730, 900, 1039, 1499
BmiI GGNNCC 4 cut(s) 493, 930, 1500, 2091
BmrI ACTGGG 2 cut(s) 1890, 1956
BmuI ACTGGG 2 cut(s) 1890, 1956
BpmI CTGGAG 2 cut(s) 549, 1377
Bpu1102I GCTNAGC 3 cut(s) 1824, 1857, 1923
BpuEI CTTGAG 3 cut(s) 393, 1956, 1989
BpuMI CCSGG 9 cut(s) 84, 1585, 1618, 1651, 1684, 1717, 1750, 1783, 1915
BsaBI GATNNNNATC 2 cut(s) 976, 982
BsaI GGTCTC 1 cut(s) 867
BsaJI CCNNGG 6 cut(s) 614, 896, 911, 1421, 2084, 2093
Bsc4I CCNNNNNNNGG 7 cut(s) 260, 716, 1331, 1355, 1741, 1774, 1947
Bse118I RCCGGY 1 cut(s) 1324
Bse1I ACTGG 3 cut(s) 1042, 1885, 1951
Bse8I GATNNNNATC 2 cut(s) 976, 982
BseBI CCWGG 5 cut(s) 186, 291, 1422, 2094, 2123
BseDI CCNNGG 6 cut(s) 614, 896, 911, 1421, 2084, 2093
BseGI GGATG 2 cut(s) 1015, 1102
BseJI GATNNNNATC 2 cut(s) 976, 982
BseLI CCNNNNNNNGG 7 cut(s) 260, 716, 1331, 1355, 1741, 1774, 1947
BseNI ACTGG 3 cut(s) 1042, 1885, 1951
BseRI GAGGAG 4 cut(s) 69, 273, 507, 885
BseYI CCCAGC 1 cut(s) 1205
Bsh1236I CGCG 3 cut(s) 913, 1817, 1850
Bsh1285I CGRYCG 1 cut(s) 1848
BshFI GGCC 3 cut(s) 731, 998, 1501
BsiEI CGRYCG 1 cut(s) 1848
BslFI GGGAC 2 cut(s) 1222, 2110
BslI CCNNNNNNNGG 7 cut(s) 260, 716, 1331, 1355, 1741, 1774, 1947
BsmAI GTCTC 6 cut(s) 154, 319, 537, 567, 867, 1298
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 2 cut(s) 1222, 2110
BsmI GAATGC 2 cut(s) 1411, 2155
BsnI GGCC 3 cut(s) 731, 998, 1501
Bso31I GGTCTC 1 cut(s) 867
Bsp1286I GDGCHC 1 cut(s) 2092
Bsp143I GATC 6 cut(s) 166, 682, 928, 977, 988, 1197
Bsp1720I GCTNAGC 3 cut(s) 1824, 1857, 1923
BspANI GGCC 3 cut(s) 731, 998, 1501
BspFNI CGCG 3 cut(s) 913, 1817, 1850
BspHI TCATGA 6 cut(s) 172, 429, 1543, 1570, 1603, 1636
BspLI GGNNCC 4 cut(s) 493, 930, 1500, 2091
BspMAI CTGCAG 5 cut(s) 1120, 1711, 1810, 1843, 1909
BspMI ACCTGC 2 cut(s) 354, 1360
BspPI GGATC 5 cut(s) 677, 923, 936, 985, 1192
BspTNI GGTCTC 1 cut(s) 867
BsrFI RCCGGY 1 cut(s) 1324
BsrI ACTGG 3 cut(s) 1042, 1885, 1951
BssAI RCCGGY 1 cut(s) 1324
BssECI CCNNGG 6 cut(s) 614, 896, 911, 1421, 2084, 2093
BssMI GATC 6 cut(s) 166, 682, 928, 977, 988, 1197
BssNAI GTATAC 1 cut(s) 2050
BssT1I CCWWGG 2 cut(s) 614, 2084
Bst1107I GTATAC 1 cut(s) 2050
Bst2UI CCWGG 5 cut(s) 186, 291, 1422, 2094, 2123
Bst4CI ACNGT 7 cut(s) 233, 239, 355, 437, 864, 1237, 2054
Bst6I CTCTTC 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 2132
BstC8I GCNNGC 5 cut(s) 1275, 1312, 1409, 1821, 1854
BstDSI CCRYGG 1 cut(s) 911
BstF5I GGATG 2 cut(s) 1015, 1102
BstFNI CGCG 3 cut(s) 913, 1817, 1850
BstHHI GCGC 2 cut(s) 1819, 1852
BstKTI GATC 6 cut(s) 169, 685, 931, 980, 991, 1200
BstMAI GTCTC 6 cut(s) 154, 319, 537, 567, 867, 1298
BstMBI GATC 6 cut(s) 166, 682, 928, 977, 988, 1197
BstMCI CGRYCG 1 cut(s) 1848
BstNI CCWGG 5 cut(s) 186, 291, 1422, 2094, 2123
BstNSI RCATGY 4 cut(s) 56, 1970, 2003, 2023
BstSFI CTRYAG 7 cut(s) 843, 1116, 1707, 1806, 1839, 1872, 1905
BstUI CGCG 3 cut(s) 913, 1817, 1850
BstX2I RGATCY 4 cut(s) 682, 928, 977, 1197
BstXI CCANNNNNNTGG 1 cut(s) 1523
BstYI RGATCY 4 cut(s) 682, 928, 977, 1197
BstZ17I GTATAC 1 cut(s) 2050
BsuRI GGCC 3 cut(s) 731, 998, 1501
BtgI CCRYGG 1 cut(s) 911
BtsCI GGATG 2 cut(s) 1015, 1102
BtsI GCAGTG 1 cut(s) 2160
BtsIMutI CAGTG 1 cut(s) 2160
BveI ACCTGC 2 cut(s) 354, 1360
Cac8I GCNNGC 5 cut(s) 1275, 1312, 1409, 1821, 1854
CciI TCATGA 6 cut(s) 172, 429, 1543, 1570, 1603, 1636
CfoI GCGC 2 cut(s) 1819, 1852
Cfr10I RCCGGY 1 cut(s) 1324
Cfr13I GGNCC 4 cut(s) 730, 900, 1039, 1499
Cfr42I CCGCGG 1 cut(s) 914
CpoI CGGWCCG 1 cut(s) 900
CseI GACGC 1 cut(s) 2077
CsiI ACCWGGT 1 cut(s) 184
CspI CGGWCCG 1 cut(s) 900
DpnI GATC 6 cut(s) 168, 684, 930, 979, 990, 1199
DpnII GATC 6 cut(s) 166, 682, 928, 977, 988, 1197
DraIII CACNNNGTG 1 cut(s) 1334
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco130I CCWWGG 2 cut(s) 614, 2084
Eco24I GRGCYC 1 cut(s) 2092
Eco31I GGTCTC 1 cut(s) 867
Eco47I GGWCC 2 cut(s) 900, 1039
Eco57I CTGAAG 2 cut(s) 402, 591
EcoO109I RGGNCCY 1 cut(s) 1499
EcoRII CCWGG 5 cut(s) 184, 289, 1420, 2092, 2121
EcoT14I CCWWGG 2 cut(s) 614, 2084
EcoT38I GRGCYC 1 cut(s) 2092
ErhI CCWWGG 2 cut(s) 614, 2084
Esp3I CGTCTC 1 cut(s) 567
FaqI GGGAC 2 cut(s) 1222, 2110
FauI CCCGC 2 cut(s) 755, 1387
FauNDI CATATG 1 cut(s) 1450
FblI GTMKAC 1 cut(s) 2049
FokI GGATG 2 cut(s) 1002, 1089
FriOI GRGCYC 1 cut(s) 2092
FspBI CTAG 4 cut(s) 164, 615, 804, 1182
GlaI GCGC 2 cut(s) 1818, 1851
GsaI CCCAGC 1 cut(s) 1209
GsuI CTGGAG 2 cut(s) 549, 1377
HaeIII GGCC 3 cut(s) 731, 998, 1501
HgaI GACGC 1 cut(s) 2077
HhaI GCGC 2 cut(s) 1819, 1852
Hin6I GCGC 2 cut(s) 1817, 1850
HinP1I GCGC 2 cut(s) 1817, 1850
HincII GTYRAC 1 cut(s) 2057
HindII GTYRAC 1 cut(s) 2057
HindIII AAGCTT 3 cut(s) 299, 384, 1338
HinfI GANTC 4 cut(s) 250, 619, 826, 890
HphI GGTGA 5 cut(s) 41, 512, 940, 1211, 1346
Hpy166II GTNNAC 7 cut(s) 32, 440, 1442, 1722, 1755, 2050, 2057
Hpy8I GTNNAC 7 cut(s) 32, 440, 1442, 1722, 1755, 2050, 2057
HpyAV CCTTC 6 cut(s) 386, 888, 1030, 1089, 1116, 1166
HpyCH4III ACNGT 7 cut(s) 233, 239, 355, 437, 864, 1237, 2054
HpyCH4IV ACGT 3 cut(s) 270, 560, 2198
HpySE526I ACGT 3 cut(s) 270, 560, 2198
HspAI GCGC 2 cut(s) 1817, 1850
KspI CCGCGG 1 cut(s) 914
Kzo9I GATC 6 cut(s) 166, 682, 928, 977, 988, 1197
LmnI GCTCC 3 cut(s) 82, 1358, 2095
MabI ACCWGGT 1 cut(s) 184
MaeI CTAG 4 cut(s) 164, 615, 804, 1182
MaeII ACGT 3 cut(s) 270, 560, 2198
MaeIII GTNAC 6 cut(s) 55, 233, 770, 1367, 1466, 2065
MalI GATC 6 cut(s) 168, 684, 930, 979, 990, 1199
MboI GATC 6 cut(s) 166, 682, 928, 977, 988, 1197
MboII GAAGA 2 cut(s) 334, 1445
MfeI CAATTG 1 cut(s) 1362
MflI RGATCY 4 cut(s) 682, 928, 977, 1197
MhlI GDGCHC 1 cut(s) 2092
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 2 cut(s) 348, 394
MroXI GAANNNNTTC 2 cut(s) 302, 667
MseI TTAA 2 cut(s) 501, 2215
MslI CAYNNNNRTG 1 cut(s) 1521
MspA1I CMGCKG 2 cut(s) 913, 1310
MunI CAATTG 1 cut(s) 1362
Mva1269I GAATGC 2 cut(s) 1411, 2155
MvaI CCWGG 5 cut(s) 186, 291, 1422, 2094, 2123
MvnI CGCG 3 cut(s) 913, 1817, 1850
NciI CCSGG 9 cut(s) 84, 1585, 1618, 1651, 1684, 1717, 1750, 1783, 1915
NdeI CATATG 1 cut(s) 1450
NdeII GATC 6 cut(s) 166, 682, 928, 977, 988, 1197
NlaIV GGNNCC 4 cut(s) 493, 930, 1500, 2091
NmeAIII GCCGAG 1 cut(s) 832
NmuCI GTSAC 1 cut(s) 2065
NspI RCATGY 4 cut(s) 56, 1970, 2003, 2023
PagI TCATGA 6 cut(s) 172, 429, 1543, 1570, 1603, 1636
PaqCI CACCTGC 1 cut(s) 1360
PciI ACATGT 1 cut(s) 52
PctI GAATGC 2 cut(s) 1411, 2155
PdmI GAANNNNTTC 2 cut(s) 302, 667
PfeI GAWTC 3 cut(s) 250, 826, 890
PflMI CCANNNNNTGG 2 cut(s) 716, 1355
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PscI ACATGT 1 cut(s) 52
PsiI TTATAA 1 cut(s) 90
Psp6I CCWGG 5 cut(s) 184, 289, 1420, 2092, 2121
PspFI CCCAGC 1 cut(s) 1205
PspGI CCWGG 5 cut(s) 184, 289, 1420, 2092, 2121
PspN4I GGNNCC 4 cut(s) 493, 930, 1500, 2091
PspPI GGNCC 4 cut(s) 730, 900, 1039, 1499
PstI CTGCAG 5 cut(s) 1120, 1711, 1810, 1843, 1909
PsuI RGATCY 4 cut(s) 682, 928, 977, 1197
PvuII CAGCTG 1 cut(s) 1310
RseI CAYNNNNRTG 1 cut(s) 1521
Rsr2I CGGWCCG 1 cut(s) 900
RsrII CGGWCCG 1 cut(s) 900
SacII CCGCGG 1 cut(s) 914
SaqAI TTAA 2 cut(s) 501, 2215
Sau3AI GATC 6 cut(s) 166, 682, 928, 977, 988, 1197
Sau96I GGNCC 4 cut(s) 730, 900, 1039, 1499
SchI GAGTC 1 cut(s) 613
SduI GDGCHC 1 cut(s) 2092
SexAI ACCWGGT 1 cut(s) 184
SfcI CTRYAG 7 cut(s) 843, 1116, 1707, 1806, 1839, 1872, 1905
Sfr303I CCGCGG 1 cut(s) 914
SgrBI CCGCGG 1 cut(s) 914
SinI GGWCC 2 cut(s) 900, 1039
SmiMI CAYNNNNRTG 1 cut(s) 1521
SmlI CTYRAG 3 cut(s) 408, 1971, 2004
SmoI CTYRAG 3 cut(s) 408, 1971, 2004
SspI AATATT 2 cut(s) 964, 1484
SspMI CTAG 4 cut(s) 164, 615, 804, 1182
StyI CCWWGG 2 cut(s) 614, 2084
TaaI ACNGT 7 cut(s) 233, 239, 355, 437, 864, 1237, 2054
TaiI ACGT 3 cut(s) 273, 563, 2201
TaqI TCGA 2 cut(s) 573, 1082
TaqII GACCGA 1 cut(s) 888
TatI WGTACW 1 cut(s) 1439
TauI GCSGC 9 cut(s) 650, 1580, 1676, 1742, 1745, 1775, 1778, 1943, 2026
TfiI GAWTC 3 cut(s) 250, 826, 890
Tru1I TTAA 2 cut(s) 501, 2215
Tru9I TTAA 2 cut(s) 501, 2215
TscAI CASTG 1 cut(s) 2160
TseFI GTSAC 1 cut(s) 2065
Tsp45I GTSAC 1 cut(s) 2065
TspDTI ATGAA 9 cut(s) 311, 360, 446, 492, 543, 631, 660, 1023, 1560
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 2160
Van91I CCANNNNNTGG 2 cut(s) 716, 1355
VpaK11BI GGWCC 2 cut(s) 900, 1039
XapI RAATTY 2 cut(s) 497, 820
XceI RCATGY 4 cut(s) 56, 1970, 2003, 2023
XmaJI CCTAGG 1 cut(s) 614
XmiI GTMKAC 1 cut(s) 2049
XmnI GAANNNNTTC 2 cut(s) 302, 667
XspI CTAG 4 cut(s) 164, 615, 804, 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.