Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Reverse (-)

27449165 .. 27449698

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1130800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTTGGAAGTATTTTAGGGAGCTGTAAAAATGTTGCTAGTTGTGAAGTCGTTAATGGAAAATTGTTTTGTCTGGCATTGCCGATATGGTGGCGTGCTACTTTCGTATTAGTCTTCAACATGATCAAGGGAAGAAATGACGGGCTTGAAAACAAGGGGCCGGCTGTAAACTACATGAATGCCAACTATTACCAGGCTCCTGCTCCTTTGAACTATGCGTACGACCATCTTGCTGCTTCTGCTTGTGCTACCGAGGATCATGGGGTGCGTAAGGACCATCTGGGTCTGGAAGACTTTTCTGGCTATATATTTATGTGTGAAGGAAGAACAAAACCGGAATGCTACCTGTACCGTGTTTTTGAACTTCCTGCTGGAAGAAGGGAAGTTATAGTGATGATCAGGCCGGGCACAAAGCTGTTTCTATTTGATTATGATGTGAAGTTTCTTTGTGGGGTACATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

155

Amino Acids

17.33

Weight (kDa)

7.57

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	101 - 153	9e-15	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	264
AfaI	GTAC	3 cut(s)	221, 350, 456
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	4 cut(s)	118, 149, 211, 362
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	2 cut(s)	24, 415
AluI	AGCT	2 cut(s)	24, 415
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	2 cut(s)	158, 401
ApeKI	GCWGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	158, 274
AsuC2I	CCSGG	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	410
BaeI	ACNNNNGTAYC	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	106, 297
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	234, 285
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	2 cut(s)	123, 396
BcnI	CCSGG	1 cut(s)	405
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	194, 405
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	158, 274
BmiI	GGNNCC	2 cut(s)	159, 198
BmrFI	CCNGG	2 cut(s)	194, 405
BpiI	GAAGAC	2 cut(s)	106, 297
BpuMI	CCSGG	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	160, 403
BsiSI	CCGG	3 cut(s)	161, 335, 404
BsiWI	CGTACG	1 cut(s)	219
BsmI	GAATGC	2 cut(s)	184, 344
BsnI	GGCC	2 cut(s)	160, 403
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	123, 256, 396
BspANI	GGCC	2 cut(s)	160, 403
BspLI	GGNNCC	2 cut(s)	159, 198
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	123, 256, 396
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	96, 162
BstKTI	GATC	3 cut(s)	126, 259, 399
BstMBI	GATC	3 cut(s)	123, 256, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	2 cut(s)	192, 403
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	2 cut(s)	106, 297
BsuRI	GGCC	2 cut(s)	160, 403
Cac8I	GCNNGC	2 cut(s)	96, 162
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	158, 274
Csp6I	GTAC	3 cut(s)	220, 349, 455
CviAII	CATG	4 cut(s)	121, 175, 260, 458
CviJI	RGCY	8 cut(s)	24, 145, 160, 164, 197, 303, 403, 415
CviKI_1	RGCY	8 cut(s)	24, 145, 160, 164, 197, 303, 403, 415
CviQI	GTAC	3 cut(s)	220, 349, 455
DpnI	GATC	3 cut(s)	125, 258, 398
DpnII	GATC	3 cut(s)	123, 256, 396
Eco47I	GGWCC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	124, 178, 263, 461
FatI	CATG	4 cut(s)	120, 174, 259, 457
FbaI	TGATCA	2 cut(s)	123, 396
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	160, 403
HapII	CCGG	3 cut(s)	161, 335, 404
Hin1II	CATG	4 cut(s)	124, 178, 263, 461
HpaII	CCGG	3 cut(s)	161, 335, 404
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	314, 372
HpyCH4III	ACNGT	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
Hsp92II	CATG	4 cut(s)	124, 178, 263, 461
KroI	GCCGGC	1 cut(s)	160
KroNI	GCCGGC	1 cut(s)	162
Ksp22I	TGATCA	2 cut(s)	123, 396
Kzo9I	GATC	3 cut(s)	123, 256, 396
LmnI	GCTCC	3 cut(s)	21, 202, 208
Lsp1109I	GCAGC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	39
MalI	GATC	3 cut(s)	125, 258, 398
MboI	GATC	3 cut(s)	123, 256, 396
MboII	GAAGA	5 cut(s)	106, 144, 302, 336, 387
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	1 cut(s)	62
MnlI	CCTC	1 cut(s)	247
MroNI	GCCGGC	1 cut(s)	160
MseI	TTAA	1 cut(s)	54
MspI	CCGG	3 cut(s)	161, 335, 404
MspR9I	CCNGG	2 cut(s)	194, 405
Mva1269I	GAATGC	2 cut(s)	184, 344
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	3 cut(s)	123, 256, 396
NgoMIV	GCCGGC	1 cut(s)	160
NlaIII	CATG	4 cut(s)	124, 178, 263, 461
NlaIV	GGNNCC	2 cut(s)	159, 198
NspI	RCATGY	1 cut(s)	461
PciI	ACATGT	1 cut(s)	457
PctI	GAATGC	2 cut(s)	184, 344
PdiI	GCCGGC	1 cut(s)	162
Pfl23II	CGTACG	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	235
PscI	ACATGT	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspLI	CGTACG	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	159, 198
PspPI	GGNCC	2 cut(s)	158, 274
PsrI	GAACNNNNNNTAC	2 cut(s)	203, 235
RsaI	GTAC	3 cut(s)	221, 350, 456
RsaNI	GTAC	3 cut(s)	220, 349, 455
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	3 cut(s)	123, 256, 396
Sau96I	GGNCC	2 cut(s)	158, 274
ScrFI	CCNGG	2 cut(s)	194, 405
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	3 cut(s)	26, 348, 417
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	192, 403
TaaI	ACNGT	1 cut(s)	353
TasI	AATT	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	274
XceI	RCATGY	1 cut(s)	461
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.