MD00G1177300.v1.1

DCD

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
41221785 .. 41232375
10591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1177300.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGAAGATAAGTGCATCTTCAGTACCTACGTCGGCTCCCGTGCCTAACAGCGGCCCTTCCACTTCCAATGTTGCTCATGCAACTTTGTCTAGCCATGCTAATCCTACCGGTAGAAAAAAGGTTCGGCCAACAAAGAATGAGAAGGATAGTGGGCACTCTCATTCCGGTTTTATATTTATGTGTAGTGGGAAAACGAAACCCGAATGTTATCGCTATCGTGTTTTTGGGCTGCCATTAGCAAAGGTGGACGTTGTGAAGAAAATTAGACCGGGTGCAAAGCTATTTCTGTATGATTTTGACTTGAAGCTTCTTTATGGCACATACAAGGCAACTTCAAATGGAGGAGTGGATTTGGAACCAATTGCGTTTAAGGGGAAATTCCCTGCACAGGTCAGATTTAAGATTTTCAAGGATTGTTTACCTCTTCCTGAAAATGCTTTCAAAGCAGCTATCAGAGACAACTATCAGGGAGGTTCCAAGTTTAAACAAGAGCTCAATAGTAAACAGGTGCATGCTTTAATCTCATTGTTTCGCCCACTCACCGAGTCAGTGCCAACTTCTGCTGCCTCTCCCCGAAATGTGGCAAAACCAGGCTCATTTCCATCACCCATTACAGAAGAAGGATTTCATCCAACAGCAAGGCTGTCCCATCAAGAGGGCTCCTATTCATATGGTATGCAACGTACTCGTGCATCGCCGTTTGATATGCAATCCAGGCAGGCAATCCCATATCCACTTTATGATCAATATGAGGTCAAAACACATGTGGGACATGTATGGCCTCGCTTAGAGCCTCGACATGTTCAGCATGCTTCTCTTCCACATCATGCTGATTCCTATTATTTAGCAGCGGCACATGAGCCGTACTTGCCTGAACAACCATACATGTCCCATCAGGATGCATATAGAAGGCATAGGGTGACACTTGCAGAGGAGATGGTTCCCAGGGATCAAGTTGTTGCCTATGGAAGCGAGTATGACGGGCCACAGATGCTGAAGCGGAGAGAGAGAGAAATTGCTCCACGTTCCAATTATGTGGCTGAATCTTATAGTCGAGAGGTTCCCACTGCTGCAGCCTCACATGTTATGGTGCAGTCACATTCTTTAGCACCATCTTATGACCGGACCTTAACGTACCAACGGTACTATCCAGTCACAACCCATCAGGATCAGAGCTTGGTGTACGCTGATCCTCTTGTAAGACCATTGCATGGTACCTCTTACTCAGCTGAGGCAGATGTTCCAATCTCTACTCACTTTTCGTACACTAGAGCACCCCATTACCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

430

Amino Acids

48.27

Weight (kDa)

9.46

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 56 - 177 1.1e-49 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1214
AccB1I GGYRCC 1 cut(s) 1214
AccB7I CCANNNNNTGG 1 cut(s) 1211
AciI CCGC 4 cut(s) 51, 851, 1000, 1285
AclWI GGATC 3 cut(s) 957, 1176, 1184
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 1016
AfaI GTAC 8 cut(s) 24, 685, 866, 1136, 1145, 1184, 1216, 1265
AfiI CCNNNNNNNGG 5 cut(s) 50, 388, 580, 655, 1211
AflIII ACRYGT 5 cut(s) 763, 772, 799, 885, 1081
AgeI ACCGGT 1 cut(s) 107
AgsI TTSAA 4 cut(s) 304, 336, 409, 442
AjnI CCWGG 3 cut(s) 589, 713, 944
AluBI AGCT 6 cut(s) 280, 307, 449, 493, 1176, 1229
AluI AGCT 6 cut(s) 280, 307, 449, 493, 1176, 1229
Alw21I GWGCWC 2 cut(s) 495, 1276
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 3 cut(s) 957, 1176, 1184
AlwNI CAGNNNCTG 1 cut(s) 994
AoxI GGCC 4 cut(s) 52, 125, 779, 983
ApeKI GCWGC 6 cut(s) 229, 446, 563, 848, 1070, 1073
ApoI RAATTY 1 cut(s) 377
AsiGI ACCGGT 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 624
Asp718I GGTACC 1 cut(s) 1214
AspS9I GGNCC 3 cut(s) 53, 983, 1125
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 532, 597, 931
AvaII GGWCC 1 cut(s) 1125
BaeGI GKGCMC 1 cut(s) 156
BanI GGYRCC 1 cut(s) 1214
BanII GRGCYC 2 cut(s) 495, 662
BauI CACGAG 1 cut(s) 687
Bbv12I GWGCWC 2 cut(s) 495, 1276
BbvCI CCTCAGC 1 cut(s) 1230
BbvI GCAGC 6 cut(s) 216, 458, 550, 860, 1057, 1085
BccI CCATC 6 cut(s) 610, 657, 900, 931, 1120, 1170
BceAI ACGGC 2 cut(s) 682, 847
BcgI CGANNNNNNTGC 2 cut(s) 668, 702
BciT130I CCWGG 3 cut(s) 591, 715, 946
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 2 cut(s) 90, 1269
BfmI CTRYAG 1 cut(s) 1071
BisI GCNGC 8 cut(s) 52, 230, 447, 564, 849, 852, 1071, 1074
BlsI GCNGC 8 cut(s) 53, 231, 448, 565, 850, 853, 1072, 1075
Bme1390I CCNGG 4 cut(s) 270, 591, 715, 946
Bme18I GGWCC 1 cut(s) 1125
BmgT120I GGNCC 3 cut(s) 53, 983, 1125
BmiI GGNNCC 7 cut(s) 36, 357, 475, 661, 942, 1062, 1216
BmrFI CCNGG 4 cut(s) 270, 591, 715, 946
BmsI GCATC 4 cut(s) 23, 701, 889, 981
Bpu10I CCTNAGC 1 cut(s) 1230
BpuMI CCSGG 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 944, 945
BsaWI WCCGGW 3 cut(s) 107, 164, 1122
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 5 cut(s) 50, 388, 580, 655, 1211
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 1151
Bse3DI GCAATG 1 cut(s) 1205
BseBI CCWGG 3 cut(s) 591, 715, 946
BseDI CCNNGG 2 cut(s) 944, 945
BseGI GGATG 2 cut(s) 628, 904
BseLI CCNNNNNNNGG 5 cut(s) 50, 388, 580, 655, 1211
BseMI GCAATG 1 cut(s) 1205
BseMII CTCAG 2 cut(s) 1221, 1239
BseNI ACTGG 1 cut(s) 1151
BseRI GAGGAG 2 cut(s) 357, 947
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 6 cut(s) 216, 458, 550, 860, 1057, 1085
BsgI GTGCAG 2 cut(s) 369, 1112
BshFI GGCC 4 cut(s) 54, 127, 781, 985
BshNI GGYRCC 1 cut(s) 1214
BshTI ACCGGT 1 cut(s) 107
BsiHKAI GWGCWC 2 cut(s) 495, 1276
BsiSI CCGG 4 cut(s) 108, 165, 269, 1123
BslFI GGGAC 3 cut(s) 631, 783, 874
BslI CCNNNNNNNGG 5 cut(s) 50, 388, 580, 655, 1211
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 3 cut(s) 631, 783, 874
BsnI GGCC 4 cut(s) 54, 127, 781, 985
Bsp1286I GDGCHC 4 cut(s) 156, 495, 662, 1276
Bsp143I GATC 4 cut(s) 742, 949, 1168, 1189
BspACI CCGC 4 cut(s) 51, 851, 1000, 1285
BspANI GGCC 4 cut(s) 54, 127, 781, 985
BspCNI CTCAG 2 cut(s) 1222, 1238
BspLI GGNNCC 7 cut(s) 36, 357, 475, 661, 942, 1062, 1216
BspMAI CTGCAG 1 cut(s) 1075
BspPI GGATC 3 cut(s) 957, 1176, 1184
BspT107I GGYRCC 1 cut(s) 1214
BsrDI GCAATG 1 cut(s) 1205
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 1151
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 944, 945
BssMI GATC 4 cut(s) 742, 949, 1168, 1189
BssSI CACGAG 1 cut(s) 687
Bst2BI CACGAG 1 cut(s) 687
Bst2UI CCWGG 3 cut(s) 591, 715, 946
Bst4CI ACNGT 1 cut(s) 1143
Bst6I CTCTTC 2 cut(s) 429, 822
BstC8I GCNNGC 3 cut(s) 513, 720, 810
BstDEI CTNAG 3 cut(s) 787, 1225, 1230
BstF5I GGATG 2 cut(s) 628, 904
BstKTI GATC 4 cut(s) 745, 952, 1171, 1192
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 4 cut(s) 742, 949, 1168, 1189
BstMWI GCNNNNNNNGC 4 cut(s) 443, 715, 868, 991
BstNI CCWGG 3 cut(s) 591, 715, 946
BstNSI RCATGY 7 cut(s) 515, 767, 776, 803, 812, 889, 1085
BstSCI CCNGG 4 cut(s) 268, 589, 713, 944
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 6 cut(s) 216, 458, 550, 860, 1057, 1085
BstXI CCANNNNNNTGG 1 cut(s) 1036
BsuRI GGCC 4 cut(s) 54, 127, 781, 985
BtgZI GCGATG 1 cut(s) 678
BtsCI GGATG 2 cut(s) 628, 904
BtsI GCAGTG 1 cut(s) 1065
BtsIMutI CAGTG 2 cut(s) 555, 1065
Cac8I GCNNGC 3 cut(s) 513, 720, 810
CaiI CAGNNNCTG 1 cut(s) 994
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 3 cut(s) 53, 983, 1125
Csp6I GTAC 8 cut(s) 23, 684, 865, 1135, 1144, 1183, 1215, 1264
CspAI ACCGGT 1 cut(s) 107
CviQI GTAC 8 cut(s) 23, 684, 865, 1135, 1144, 1183, 1215, 1264
DdeI CTNAG 3 cut(s) 787, 1225, 1230
DpnI GATC 4 cut(s) 744, 951, 1170, 1191
DpnII GATC 4 cut(s) 742, 949, 1168, 1189
DraI TTTAAA 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 125
Eam1104I CTCTTC 2 cut(s) 429, 822
EarI CTCTTC 2 cut(s) 429, 822
Ecl136II GAGCTC 1 cut(s) 493
Eco24I GRGCYC 2 cut(s) 495, 662
Eco47I GGWCC 1 cut(s) 1125
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 1016
EcoICRI GAGCTC 1 cut(s) 493
EcoRII CCWGG 3 cut(s) 589, 713, 944
EcoT22I ATGCAT 1 cut(s) 904
EcoT38I GRGCYC 2 cut(s) 495, 662
FalI AAGNNNNNCTT 1 cut(s) 33
FaqI GGGAC 3 cut(s) 631, 783, 874
FauNDI CATATG 1 cut(s) 670
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 8 cut(s) 52, 230, 447, 564, 849, 852, 1071, 1074
FokI GGATG 2 cut(s) 615, 911
FriOI GRGCYC 2 cut(s) 495, 662
Fsp4HI GCNGC 8 cut(s) 52, 230, 447, 564, 849, 852, 1071, 1074
FspBI CTAG 2 cut(s) 90, 1269
GluI GCNGC 8 cut(s) 52, 230, 447, 564, 849, 852, 1071, 1074
HaeIII GGCC 4 cut(s) 54, 127, 781, 985
HapII CCGG 4 cut(s) 108, 165, 269, 1123
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 3 cut(s) 545, 833, 1043
HpaII CCGG 4 cut(s) 108, 165, 269, 1123
HphI GGTGA 3 cut(s) 532, 597, 931
Hpy166II GTNNAC 5 cut(s) 247, 419, 503, 1183, 1266
Hpy188I TCNGA 3 cut(s) 395, 455, 1173
Hpy188III TCNNGA 5 cut(s) 428, 653, 896, 1055, 1166
Hpy8I GTNNAC 5 cut(s) 247, 419, 503, 1183, 1266
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 4 cut(s) 66, 136, 614, 903
HpyCH4III ACNGT 1 cut(s) 1143
HpyCH4IV ACGT 5 cut(s) 29, 249, 682, 1024, 1133
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 715, 868, 991
HpyF3I CTNAG 3 cut(s) 787, 1225, 1230
HpySE526I ACGT 5 cut(s) 29, 249, 682, 1024, 1133
KpnI GGTACC 1 cut(s) 1218
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 4 cut(s) 742, 949, 1168, 1189
LmnI GCTCC 3 cut(s) 40, 665, 1024
Lsp1109I GCAGC 6 cut(s) 216, 458, 550, 860, 1057, 1085
LweI GCATC 4 cut(s) 23, 701, 889, 981
MaeI CTAG 2 cut(s) 90, 1269
MaeII ACGT 5 cut(s) 29, 249, 682, 1024, 1133
MaeIII GTNAC 3 cut(s) 919, 1095, 1153
MalI GATC 4 cut(s) 744, 951, 1170, 1191
MboI GATC 4 cut(s) 742, 949, 1168, 1189
MboII GAAGA 6 cut(s) 9, 16, 268, 416, 629, 809
MfeI CAATTG 1 cut(s) 360
MhlI GDGCHC 4 cut(s) 156, 495, 662, 1276
MluCI AATT 5 cut(s) 261, 360, 377, 1014, 1030
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 1 cut(s) 656
Mph1103I ATGCAT 1 cut(s) 904
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 5 cut(s) 369, 399, 483, 518, 1130
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 4 cut(s) 51, 851, 1229, 1287
MspI CCGG 4 cut(s) 108, 165, 269, 1123
MspR9I CCNGG 4 cut(s) 270, 591, 715, 946
MssI GTTTAAAC 1 cut(s) 484
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 3 cut(s) 591, 715, 946
MwoI GCNNNNNNNGC 4 cut(s) 443, 715, 868, 991
NciI CCSGG 1 cut(s) 270
NdeI CATATG 1 cut(s) 670
NdeII GATC 4 cut(s) 742, 949, 1168, 1189
NlaIV GGNNCC 7 cut(s) 36, 357, 475, 661, 942, 1062, 1216
NmuCI GTSAC 3 cut(s) 919, 1095, 1153
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 7 cut(s) 515, 767, 776, 803, 812, 889, 1085
PaeI GCATGC 2 cut(s) 515, 812
PasI CCCWGGG 1 cut(s) 945
PciI ACATGT 5 cut(s) 763, 772, 799, 885, 1081
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 833, 1043
PflMI CCANNNNNTGG 1 cut(s) 1211
PinAI ACCGGT 1 cut(s) 107
PkrI GCNGC 8 cut(s) 53, 231, 448, 565, 850, 853, 1072, 1075
PleI GAGTC 1 cut(s) 553
PmeI GTTTAAAC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 553
PscI ACATGT 5 cut(s) 763, 772, 799, 885, 1081
Psp124BI GAGCTC 1 cut(s) 495
Psp6I CCWGG 3 cut(s) 589, 713, 944
PspGI CCWGG 3 cut(s) 589, 713, 944
PspN4I GGNNCC 7 cut(s) 36, 357, 475, 661, 942, 1062, 1216
PspPI GGNCC 3 cut(s) 53, 983, 1125
PstI CTGCAG 1 cut(s) 1075
PstNI CAGNNNCTG 1 cut(s) 994
PvuII CAGCTG 1 cut(s) 1229
RsaI GTAC 8 cut(s) 24, 685, 866, 1136, 1145, 1184, 1216, 1265
RsaNI GTAC 8 cut(s) 23, 684, 865, 1135, 1144, 1183, 1215, 1264
RseI CAYNNNNRTG 1 cut(s) 897
SacI GAGCTC 1 cut(s) 495
SaqAI TTAA 5 cut(s) 369, 399, 483, 518, 1130
SatI GCNGC 8 cut(s) 52, 230, 447, 564, 849, 852, 1071, 1074
Sau3AI GATC 4 cut(s) 742, 949, 1168, 1189
Sau96I GGNCC 3 cut(s) 53, 983, 1125
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 4 cut(s) 270, 591, 715, 946
SduI GDGCHC 4 cut(s) 156, 495, 662, 1276
SfaNI GCATC 4 cut(s) 23, 701, 889, 981
SfcI CTRYAG 1 cut(s) 1071
SinI GGWCC 1 cut(s) 1125
SmiMI CAYNNNNRTG 1 cut(s) 897
SphI GCATGC 2 cut(s) 515, 812
Sse9I AATT 5 cut(s) 261, 360, 377, 1014, 1030
SsiI CCGC 4 cut(s) 51, 851, 1000, 1285
SspMI CTAG 2 cut(s) 90, 1269
SstI GAGCTC 1 cut(s) 495
StyD4I CCNGG 4 cut(s) 268, 589, 713, 944
TaaI ACNGT 1 cut(s) 1143
TaiI ACGT 5 cut(s) 32, 252, 685, 1027, 1136
TaqI TCGA 2 cut(s) 796, 1054
TasI AATT 5 cut(s) 261, 360, 377, 1014, 1030
TauI GCSGC 2 cut(s) 54, 854
TfiI GAWTC 2 cut(s) 833, 1043
Tru1I TTAA 5 cut(s) 369, 399, 483, 518, 1130
Tru9I TTAA 5 cut(s) 369, 399, 483, 518, 1130
TscAI CASTG 2 cut(s) 555, 1072
TseFI GTSAC 3 cut(s) 919, 1095, 1153
TseI GCWGC 6 cut(s) 229, 446, 563, 848, 1070, 1073
Tsp45I GTSAC 3 cut(s) 919, 1095, 1153
TspDTI ATGAA 3 cut(s) 17, 617, 657
TspRI CASTG 2 cut(s) 555, 1072
Van91I CCANNNNNTGG 1 cut(s) 1211
VpaK11BI GGWCC 1 cut(s) 1125
XapI RAATTY 1 cut(s) 377
XceI RCATGY 7 cut(s) 515, 767, 776, 803, 812, 889, 1085
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 2 cut(s) 90, 1269
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.