Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Forward (+)

61043338 .. 61046490

Gene Structure 3153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0492900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTTGCTTACATGATCATAGCTGCGAAGAACATGATTGCTCCTCTGATTGGTCTCTCTACAAGCATATAGACCTCCCCAAGGTGTCTGCTTTAAATGAGGCAGTTCCAGGGAGCGTCAAGTCTGTGTTCAAAGCTTGGGAGGAACGGCTGAATTCATCTGGGGGACATCTGGAGAGCAATGAGGGTGATCCTGAATTGCTTATTTTCATTCCATTCACATCAGATGTGAAGATCAAGAGCATATCAGTTGTGGGTGGTGTTGACGGAACAAGTCCTTCCAAGATGAGGGCGTTCATTAACCGAGAAGGCATTGACTTCTCAGATGCTCAAGGCATGCAAGCCATTCAGGAGTGGGATTTGGTTGAAAATTTCCAAGGAGTGTTGGAGTACCAGACAAGATATTCCAAATTTCAAAATGTGGGCAATATCACATTGCATTTCCCTGATAGTTTTGGTGGTGATACAACCAAGATTGAGTATATTGGCTTTAAAGGCGAAGCTACTCAGTTAAAGAGGGATGTTGTTGCTACCATAGTTTATGAACTCAGGCCAAATCCTTCTGATCACAAAACAAAGGCTGAAGGTGGGGGTCTTTCACATGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

203

Amino Acids

22.48

Weight (kDa)

5.07

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PITH	PF06201	12 - 184	3.4e-54	PITH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	3 cut(s)	154, 370, 410
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	51, 82, 288
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	3 cut(s)	133, 368, 416
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	3 cut(s)	24, 137, 503
AluI	AGCT	3 cut(s)	24, 137, 503
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	3 cut(s)	154, 370, 410
AsuHPI	GGTGA	2 cut(s)	200, 473
BbvI	GCAGC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	2 cut(s)	16, 565
BcoDI	GTCTC	1 cut(s)	60
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	81, 110, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 82, 288
Bse3DI	GCAATG	2 cut(s)	187, 434
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	81, 110, 376
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	3 cut(s)	51, 82, 288
BseMI	GCAATG	2 cut(s)	187, 434
BseMII	CTCAG	3 cut(s)	336, 521, 562
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	11
BshFI	GGCC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	3 cut(s)	51, 82, 288
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	553
Bso31I	GGTCTC	1 cut(s)	60
Bsp143I	GATC	4 cut(s)	16, 190, 234, 565
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	3 cut(s)	335, 520, 561
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	187, 434
BssECI	CCNNGG	3 cut(s)	81, 110, 376
BssMI	GATC	4 cut(s)	16, 190, 234, 565
BssT1I	CCWWGG	2 cut(s)	81, 376
Bst2UI	CCWGG	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	7, 338, 342
BstDEI	CTNAG	3 cut(s)	322, 507, 548
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	4 cut(s)	19, 193, 237, 568
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	4 cut(s)	16, 190, 234, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	2 cut(s)	340, 605
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	553
BtsCI	GGATG	1 cut(s)	526
Cac8I	GCNNGC	3 cut(s)	7, 338, 342
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	4 cut(s)	14, 35, 337, 602
CviJI	RGCY	9 cut(s)	5, 24, 137, 151, 344, 489, 503, 553, 581
CviKI_1	RGCY	9 cut(s)	5, 24, 137, 151, 344, 489, 503, 553, 581
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	322, 507, 548
DpnI	GATC	4 cut(s)	18, 192, 236, 567
DpnII	GATC	4 cut(s)	16, 190, 234, 565
DraI	TTTAAA	2 cut(s)	96, 493
Eco130I	CCWWGG	2 cut(s)	81, 376
Eco31I	GGTCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	81, 376
ErhI	CCWWGG	2 cut(s)	81, 376
FaeI	CATG	4 cut(s)	17, 38, 340, 605
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	4 cut(s)	13, 34, 336, 601
FbaI	TGATCA	2 cut(s)	16, 565
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	553
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	4 cut(s)	17, 38, 340, 605
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	135
HphI	GGTGA	2 cut(s)	200, 473
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	49, 226, 325, 565
Hpy188III	TCNNGA	4 cut(s)	173, 194, 238, 350
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	4 cut(s)	288, 302, 570, 578
HpyCH4V	TGCA	2 cut(s)	340, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	3 cut(s)	322, 507, 548
Hsp92II	CATG	4 cut(s)	17, 38, 340, 605
Ksp22I	TGATCA	2 cut(s)	16, 565
Kzo9I	GATC	4 cut(s)	16, 190, 234, 565
LmnI	GCTCC	2 cut(s)	47, 114
LpnPI	CCDG	9 cut(s)	96, 123, 147, 158, 207, 335, 407, 459, 535
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	1 cut(s)	316
MalI	GATC	4 cut(s)	18, 192, 236, 567
MboI	GATC	4 cut(s)	16, 190, 234, 565
MboII	GAAGA	2 cut(s)	41, 244
MluCI	AATT	4 cut(s)	154, 197, 370, 410
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	7 cut(s)	55, 86, 94, 136, 178, 282, 510
MseI	TTAA	4 cut(s)	95, 300, 492, 512
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	495
NdeII	GATC	4 cut(s)	16, 190, 234, 565
NlaIII	CATG	4 cut(s)	17, 38, 340, 605
NspI	RCATGY	2 cut(s)	340, 605
PaeI	GCATGC	1 cut(s)	340
PciI	ACATGT	1 cut(s)	601
PkrI	GCNGC	1 cut(s)	26
PscI	ACATGT	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	4 cut(s)	95, 300, 492, 512
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	4 cut(s)	16, 190, 234, 565
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	6 cut(s)	26, 78, 87, 139, 505, 589
SfaNI	GCATC	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SphI	GCATGC	1 cut(s)	340
Sse9I	AATT	4 cut(s)	154, 197, 370, 410
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	2 cut(s)	81, 376
TasI	AATT	4 cut(s)	154, 197, 370, 410
Tru1I	TTAA	4 cut(s)	95, 300, 492, 512
Tru9I	TTAA	4 cut(s)	95, 300, 492, 512
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	4 cut(s)	147, 199, 286, 558
TspGWI	ACGGA	1 cut(s)	282
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	3 cut(s)	154, 370, 410
XceI	RCATGY	2 cut(s)	340, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.