Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Reverse (-)

46451653 .. 46456169

Gene Structure 4517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG292600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGAAAAAGACGAGGCAAGCGTCTAAGCAAAAGAGGCCTAACTAGAGATCATGATGGTAGGATTAGGAAGATAGACAAGAGTTTTACAAAGGAAAAGAAGAAATCTAAGAAGATAACCGAATCTTCCTTGCCTGAGACTGCAGCTGAGCTTAGTAGTAGTGCCAATTCTGCTTCCAATAAAGCAACTTCTTCTAGTCATGCTAATCAAGCTACTAGAGAAATGCTTCGATCAAAAAACAAAGGGAAGCATAGTGGGCAATCACATTCTGGTTTTATCTTTATGTGTAATGGAAAGACTAAACCCGAATGTTATCAGTATCGCGTTTTTGGGCTACCAATGGCAAAAGTAGAAGTTGTGAAGACAATCAAACAGGGTACACATCTATTTTTATATGACTTTGACTTGAAGCTCCTTTATGGCACATACAGCGCAACTTCGGATGGAGCATTAGATTTGGAGCCAATTGCATTCAAGGGAAAATTTCCTGCACAGGTCAGGTTTAAGATTTCCAAGGATTGTTTACCGCTTCACGAAAGTTCTTTTAAAACAGCCATAAGAGACAATTACCAGGGCGGTGGTAAGTTTAAACAAGAGCTGAATAACAAACAGGTGCGTGCTCTAATCTCATTGTTCCGCCCAATCACTGCATCAATGCCTACTTCTGCTGCCCATCACCGAGATGTGGCAAGAACAGGCTCATATCCATCTCCTATTAGGGAAGAAGGATTTCATCCAACAGCAAGGCCGTCTCTTCAAGAGGGCTTATATTTATCTAGTGTACAACGTGCTCATGCATTGCCACTTCTTAATACGCAATCCATACAGGTTGTTCCATATCCACATTTTAAAAAATATGAAGCAGAAAGATGTGTGGCACGTGTTCAGCCTCCCATAGAGCCTCGACATGTTGTTCAGCATCAGCCAGATTCGTATTATCTAGCAGCGGCCCATGAGCCATACGTGCCTGAAAAACCTTTCTTGTCCTCTCATGATGCATATAGAAGGTATTTTCCTCTGCCACAACTTTGTACAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

346

Amino Acids

39.04

Weight (kDa)

9.88

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	91 - 212	1.1e-49	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	324
AciI	CCGC	4 cut(s)	527, 576, 637, 947
AcsI	RAATTY	1 cut(s)	482
AcvI	CACGTG	1 cut(s)	881
AfaI	GTAC	3 cut(s)	379, 783, 1033
AfiI	CCNNNNNNNGG	1 cut(s)	685
AflIII	ACRYGT	2 cut(s)	880, 907
AgsI	TTSAA	3 cut(s)	409, 475, 758
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	5 cut(s)	146, 151, 212, 412, 598
AluI	AGCT	5 cut(s)	146, 151, 212, 412, 598
Alw21I	GWGCWC	2 cut(s)	622, 793
Alw26I	GTCTC	3 cut(s)	131, 555, 756
AoxI	GGCC	3 cut(s)	37, 746, 948
ApeKI	GCWGC	3 cut(s)	143, 668, 944
ApoI	RAATTY	1 cut(s)	482
Asp700I	GAANNNNTTC	2 cut(s)	225, 729
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	949
AsuHPI	GGTGA	1 cut(s)	668
BbrPI	CACGTG	1 cut(s)	881
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	2 cut(s)	622, 793
BbvI	GCAGC	3 cut(s)	155, 655, 956
BccI	CCATC	4 cut(s)	50, 437, 681, 715
BceAI	ACGGC	1 cut(s)	733
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	3 cut(s)	131, 555, 756
BfaI	CTAG	5 cut(s)	45, 195, 216, 777, 941
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	4 cut(s)	144, 669, 945, 948
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	4 cut(s)	145, 670, 946, 949
Bme1390I	CCNGG	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	949
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	3 cut(s)	659, 928, 985
BpiI	GAAGAC	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	147
BsaAI	YACGTR	2 cut(s)	881, 964
BsaJI	CCNNGG	2 cut(s)	513, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	797
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	2 cut(s)	513, 571
BseGI	GGATG	2 cut(s)	448, 733
BseLI	CCNNNNNNNGG	1 cut(s)	685
BseMI	GCAATG	1 cut(s)	797
BseMII	CTCAG	2 cut(s)	126, 138
BseXI	GCAGC	3 cut(s)	155, 655, 956
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	39, 748, 950
BsiHKAI	GWGCWC	2 cut(s)	622, 793
BslI	CCNNNNNNNGG	1 cut(s)	685
BsmAI	GTCTC	3 cut(s)	131, 555, 756
BsmBI	CGTCTC	1 cut(s)	756
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	39, 748, 950
Bsp1286I	GDGCHC	2 cut(s)	622, 793
Bsp1407I	TGTACA	2 cut(s)	781, 1031
Bsp143I	GATC	2 cut(s)	49, 230
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	4 cut(s)	527, 576, 637, 947
BspANI	GGCC	3 cut(s)	39, 748, 950
BspCNI	CTCAG	2 cut(s)	127, 139
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	2 cut(s)	52, 991
BspLI	GGNNCC	1 cut(s)	462
BspMAI	CTGCAG	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	797
BsrGI	TGTACA	2 cut(s)	781, 1031
BssECI	CCNNGG	2 cut(s)	513, 571
BssMI	GATC	2 cut(s)	49, 230
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	572
Bst6I	CTCTTC	1 cut(s)	759
BstAUI	TGTACA	2 cut(s)	781, 1031
BstBAI	YACGTR	2 cut(s)	881, 964
BstC8I	GCNNGC	2 cut(s)	20, 618
BstDEI	CTNAG	5 cut(s)	26, 108, 135, 147, 152
BstF5I	GGATG	2 cut(s)	448, 733
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	2 cut(s)	52, 233
BstMAI	GTCTC	3 cut(s)	131, 555, 756
BstMBI	GATC	2 cut(s)	49, 230
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 170, 209, 256, 429, 964
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	155, 655, 956
BstV2I	GAAGAC	1 cut(s)	368
BstXI	CCANNNNNNTGG	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	39, 748, 950
BtsCI	GGATG	2 cut(s)	448, 733
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	2 cut(s)	20, 618
CciI	TCATGA	2 cut(s)	52, 991
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	949
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	378, 782, 1032
CviAII	CATG	6 cut(s)	53, 200, 794, 908, 953, 992
CviQI	GTAC	3 cut(s)	378, 782, 1032
DdeI	CTNAG	5 cut(s)	26, 108, 135, 147, 152
DpnI	GATC	2 cut(s)	51, 232
DpnII	GATC	2 cut(s)	49, 230
DraI	TTTAAA	3 cut(s)	547, 589, 850
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
EciI	GGCGGA	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	1 cut(s)	39
Eco72I	CACGTG	1 cut(s)	881
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	2 cut(s)	799, 1000
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	6 cut(s)	56, 203, 797, 911, 956, 995
FatI	CATG	6 cut(s)	52, 199, 793, 907, 952, 991
Fnu4HI	GCNGC	4 cut(s)	144, 669, 945, 948
FokI	GGATG	2 cut(s)	455, 720
Fsp4HI	GCNGC	4 cut(s)	144, 669, 945, 948
FspBI	CTAG	5 cut(s)	45, 195, 216, 777, 941
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	4 cut(s)	144, 669, 945, 948
HaeIII	GGCC	3 cut(s)	39, 748, 950
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	6 cut(s)	56, 203, 797, 911, 956, 995
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	122, 929
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	3 cut(s)	380, 524, 782
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	4 cut(s)	53, 533, 758, 992
Hpy8I	GTNNAC	3 cut(s)	380, 524, 782
HpyAV	CCTTC	2 cut(s)	719, 999
HpyCH4IV	ACGT	3 cut(s)	787, 880, 963
HpyCH4V	TGCA	6 cut(s)	143, 470, 491, 650, 797, 998
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 170, 209, 256, 429, 964
HpyF3I	CTNAG	5 cut(s)	26, 108, 135, 147, 152
HpySE526I	ACGT	3 cut(s)	787, 880, 963
Hsp92II	CATG	6 cut(s)	56, 203, 797, 911, 956, 995
HspAI	GCGC	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	49, 230
LmnI	GCTCC	3 cut(s)	417, 446, 460
Lsp1109I	GCAGC	3 cut(s)	155, 655, 956
LweI	GCATC	3 cut(s)	659, 928, 985
MaeI	CTAG	5 cut(s)	45, 195, 216, 777, 941
MaeII	ACGT	3 cut(s)	787, 880, 963
MalI	GATC	2 cut(s)	51, 232
MboI	GATC	2 cut(s)	49, 230
MboII	GAAGA	8 cut(s)	82, 112, 117, 124, 183, 373, 734, 746
MfeI	CAATTG	1 cut(s)	465
MhlI	GDGCHC	2 cut(s)	622, 793
MluCI	AATT	5 cut(s)	166, 465, 482, 565, 1035
MmeI	TCCRAC	1 cut(s)	761
MnlI	CCTC	7 cut(s)	8, 29, 754, 900, 912, 997, 1026
Mph1103I	ATGCAT	2 cut(s)	799, 1000
MroXI	GAANNNNTTC	2 cut(s)	225, 729
MseI	TTAA	5 cut(s)	504, 546, 588, 810, 849
MslI	CAYNNNNRTG	1 cut(s)	681
MspA1I	CMGCKG	2 cut(s)	146, 947
MspR9I	CCNGG	1 cut(s)	572
MssI	GTTTAAAC	1 cut(s)	589
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	6 cut(s)	36, 170, 209, 256, 429, 964
NdeII	GATC	2 cut(s)	49, 230
NlaIII	CATG	6 cut(s)	56, 203, 797, 911, 956, 995
NlaIV	GGNNCC	1 cut(s)	462
NsiI	ATGCAT	2 cut(s)	799, 1000
NspI	RCATGY	1 cut(s)	911
PagI	TCATGA	2 cut(s)	52, 991
PceI	AGGCCT	1 cut(s)	39
PciI	ACATGT	1 cut(s)	907
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PctI	GAATGC	1 cut(s)	470
PdmI	GAANNNNTTC	2 cut(s)	225, 729
PfeI	GAWTC	2 cut(s)	122, 929
PkrI	GCNGC	4 cut(s)	145, 670, 946, 949
PmaCI	CACGTG	1 cut(s)	881
PmeI	GTTTAAAC	1 cut(s)	589
PmlI	CACGTG	1 cut(s)	881
Ppu21I	YACGTR	2 cut(s)	881, 964
PscI	ACATGT	1 cut(s)	907
Psp6I	CCWGG	1 cut(s)	570
PspCI	CACGTG	1 cut(s)	881
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	949
PstI	CTGCAG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	3 cut(s)	379, 783, 1033
RsaNI	GTAC	3 cut(s)	378, 782, 1032
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	5 cut(s)	504, 546, 588, 810, 849
SatI	GCNGC	4 cut(s)	144, 669, 945, 948
Sau3AI	GATC	2 cut(s)	49, 230
Sau96I	GGNCC	1 cut(s)	949
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	2 cut(s)	622, 793
SfaNI	GCATC	3 cut(s)	659, 928, 985
SfcI	CTRYAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	5 cut(s)	166, 465, 482, 565, 1035
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	4 cut(s)	527, 576, 637, 947
SspMI	CTAG	5 cut(s)	45, 195, 216, 777, 941
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	513
TaiI	ACGT	3 cut(s)	790, 883, 966
TaqI	TCGA	2 cut(s)	229, 904
TasI	AATT	5 cut(s)	166, 465, 482, 565, 1035
TatI	WGTACW	2 cut(s)	781, 1031
TauI	GCSGC	1 cut(s)	950
TfiI	GAWTC	2 cut(s)	122, 929
Tru1I	TTAA	5 cut(s)	504, 546, 588, 810, 849
Tru9I	TTAA	5 cut(s)	504, 546, 588, 810, 849
TscAI	CASTG	1 cut(s)	652
TseI	GCWGC	3 cut(s)	143, 668, 944
TspDTI	ATGAA	2 cut(s)	722, 873
TspRI	CASTG	1 cut(s)	652
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	1 cut(s)	911
XmnI	GAANNNNTTC	2 cut(s)	225, 729
XspI	CTAG	5 cut(s)	45, 195, 216, 777, 941
Zsp2I	ATGCAT	2 cut(s)	799, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.