Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Reverse (-)

7349704 .. 7353671

Gene Structure 3968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG099200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAACTGTGGAGGAAATGAGGACTTGGAATATCGAGCATCGGCTGTAGGTGACTTGAATGCAAATTATGTTACCCCTTTGCCCCCTGTGAGTCGTTGGTATGGTCAGATTTCTGCTCCTGCCGATATCATAAGTAGAGATGGCACAAAGGAACAAATGGTGTGCAACTACCAGATGAATTCGGAGGATTTTTCTGGTTATATTTTTATGTGTAATGGACGAACAAAACCAGAATGCTATATGTACCGAGTTTTCGGACTTCCTGCTGGAAGAAGGGAAGTTATTCAGAAGATTAAGCCAGGGATGAAGCTATTTCTATTTGACTATGATGTGAAGTATCTTTATGGGGTATACGAAGCAACCACTGCTGGAAAATTGAACTGGGACACAGCTGCTTTTGGTGGGAACTTCCCTGCACAGGTGAGATTCCATATCTACAAGGAATGTCTCCCTCTGCCAGAGAGTTGTTTCAAACATGCTATTCGAGATAACTACCAGACAGGCTCCAAAAAATTTAATCCAATTCTCAGTAGCCAACAAGTAAGTCATCTATTATCAATGTTCAATCCTCTTACAAAGCTGTCATCTGCTAAATATGACCATTACCCTGTAAAGAATCAATTTCAATCCCATTCAAGGCTTCCTCCTCCAAGTTATCCATCCTTTAACTTGATAAACACCAGTCATGCTCCACAAGCGTCACTGCCTCCAAGCTATTCTTCCATGTATGGCAGACTTACTTCACCAGCCTTGGAGCCTCAGTATACTCAAACGAGTGTCCTGCAGCCAGAACATGTTGGTTATGGATATGCACCACAGATGGGCTACATAAATCCTGCAGTGCAACCGCAAGCCAATTCAGCTCCATATCAGACATCTTATACTGTAGAAGCTGGGCAGCCGTACTTGCATGAAGTACCCAAATCATATGAAAGGTACTTCTCCTTATGCAGCTTGATCCCCATACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

323

Amino Acids

36.45

Weight (kDa)

8.32

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	66 - 188	3.3e-48	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	351, 764
AciI	CCGC	1 cut(s)	848
AclWI	GGATC	1 cut(s)	952
AcsI	RAATTY	2 cut(s)	178, 512
AfaI	GTAC	4 cut(s)	245, 905, 918, 938
AfiI	CCNNNNNNNGG	3 cut(s)	418, 636, 821
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	6 cut(s)	58, 379, 472, 565, 626, 636
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
AluBI	AGCT	7 cut(s)	310, 392, 580, 714, 863, 893, 954
AluI	AGCT	7 cut(s)	310, 392, 580, 714, 863, 893, 954
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	952
ApeKI	GCWGC	4 cut(s)	392, 784, 898, 951
ApoI	RAATTY	2 cut(s)	178, 512
Asp700I	GAANNNNTTC	1 cut(s)	282
AsuHPI	GGTGA	3 cut(s)	62, 433, 735
BbvI	GCAGC	4 cut(s)	379, 796, 910, 963
BccI	CCATC	3 cut(s)	134, 667, 814
BceAI	ACGGC	1 cut(s)	886
BcgI	CGANNNNNNTGC	2 cut(s)	763, 797
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	452
BfmI	CTRYAG	4 cut(s)	45, 782, 837, 885
BisI	GCNGC	4 cut(s)	393, 785, 899, 952
BlsI	GCNGC	4 cut(s)	394, 786, 900, 953
Bme1390I	CCNGG	1 cut(s)	300
BmiI	GGNNCC	2 cut(s)	505, 756
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	299, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 636, 821
Bse1I	ACTGG	2 cut(s)	386, 681
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	299, 750
BseGI	GGATG	2 cut(s)	309, 659
BseLI	CCNNNNNNNGG	3 cut(s)	418, 636, 821
BseMII	CTCAG	2 cut(s)	541, 773
BseNI	ACTGG	2 cut(s)	386, 681
BseRI	GAGGAG	1 cut(s)	636
BseXI	GCAGC	4 cut(s)	379, 796, 910, 963
BseYI	CCCAGC	1 cut(s)	893
BsgI	GTGCAG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	3 cut(s)	418, 636, 821
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	2 cut(s)	64, 239
Bsp143I	GATC	1 cut(s)	957
BspACI	CCGC	1 cut(s)	848
BspCNI	CTCAG	2 cut(s)	540, 772
BspLI	GGNNCC	2 cut(s)	505, 756
BspMAI	CTGCAG	2 cut(s)	786, 841
BspPI	GGATC	1 cut(s)	952
BsrI	ACTGG	2 cut(s)	386, 681
BssECI	CCNNGG	2 cut(s)	299, 750
BssMI	GATC	1 cut(s)	957
BssNAI	GTATAC	2 cut(s)	352, 765
BssT1I	CCWWGG	1 cut(s)	750
Bst1107I	GTATAC	2 cut(s)	352, 765
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	8, 886
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	852
BstDEI	CTNAG	2 cut(s)	527, 759
BstF5I	GGATG	2 cut(s)	309, 659
BstKTI	GATC	1 cut(s)	960
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	957
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 695, 860, 907
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	2 cut(s)	479, 797
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	4 cut(s)	45, 782, 837, 885
BstV1I	GCAGC	4 cut(s)	379, 796, 910, 963
BstZ17I	GTATAC	2 cut(s)	352, 765
BtsCI	GGATG	2 cut(s)	309, 659
BtsI	GCAGTG	3 cut(s)	363, 701, 846
BtsIMutI	CAGTG	3 cut(s)	363, 701, 846
Cac8I	GCNNGC	1 cut(s)	852
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	4 cut(s)	244, 904, 917, 937
CviAII	CATG	5 cut(s)	476, 686, 724, 794, 911
CviQI	GTAC	4 cut(s)	244, 904, 917, 937
DdeI	CTNAG	2 cut(s)	527, 759
DpnI	GATC	1 cut(s)	959
DpnII	GATC	1 cut(s)	957
Eco130I	CCWWGG	1 cut(s)	750
Eco32I	GATATC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	5 cut(s)	479, 689, 727, 797, 914
FalI	AAGNNNNNCTT	2 cut(s)	703, 735
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	5 cut(s)	475, 685, 723, 793, 910
FauNDI	CATATG	1 cut(s)	928
FblI	GTMKAC	2 cut(s)	351, 764
Fnu4HI	GCNGC	4 cut(s)	393, 785, 899, 952
FokI	GGATG	2 cut(s)	316, 646
Fsp4HI	GCNGC	4 cut(s)	393, 785, 899, 952
GluI	GCNGC	4 cut(s)	393, 785, 899, 952
GsaI	CCCAGC	1 cut(s)	897
HgaI	GACGC	1 cut(s)	687
Hin1II	CATG	5 cut(s)	479, 689, 727, 797, 914
HinfI	GANTC	3 cut(s)	91, 426, 616
HphI	GGTGA	3 cut(s)	62, 433, 735
Hpy166II	GTNNAC	2 cut(s)	352, 765
Hpy188I	TCNGA	5 cut(s)	108, 184, 257, 288, 873
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	2 cut(s)	352, 765
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	2 cut(s)	8, 886
HpyCH4V	TGCA	9 cut(s)	62, 165, 416, 784, 812, 839, 844, 910, 951
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 695, 860, 907
HpyF3I	CTNAG	2 cut(s)	527, 759
Hsp92II	CATG	5 cut(s)	479, 689, 727, 797, 914
Kzo9I	GATC	1 cut(s)	957
LmnI	GCTCC	5 cut(s)	121, 509, 694, 754, 868
Lsp1109I	GCAGC	4 cut(s)	379, 796, 910, 963
LweI	GCATC	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	50, 70, 699
MalI	GATC	1 cut(s)	959
MboI	GATC	1 cut(s)	957
MboII	GAAGA	3 cut(s)	282, 301, 711
MluCI	AATT	7 cut(s)	64, 178, 374, 512, 522, 620, 856
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	9 cut(s)	5, 13, 178, 462, 579, 654, 657, 717, 768
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	3 cut(s)	294, 516, 666
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	64, 239
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	4 cut(s)	365, 695, 860, 907
NdeI	CATATG	1 cut(s)	928
NdeII	GATC	1 cut(s)	957
NlaIII	CATG	5 cut(s)	479, 689, 727, 797, 914
NlaIV	GGNNCC	2 cut(s)	505, 756
NmuCI	GTSAC	2 cut(s)	50, 699
NspI	RCATGY	2 cut(s)	479, 797
PciI	ACATGT	1 cut(s)	793
PctI	GAATGC	2 cut(s)	64, 239
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	426, 616
PkrI	GCNGC	4 cut(s)	394, 786, 900, 953
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PscI	ACATGT	1 cut(s)	793
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	505, 756
PstI	CTGCAG	2 cut(s)	786, 841
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	4 cut(s)	245, 905, 918, 938
RsaNI	GTAC	4 cut(s)	244, 904, 917, 937
SaqAI	TTAA	3 cut(s)	294, 516, 666
SatI	GCNGC	4 cut(s)	393, 785, 899, 952
Sau3AI	GATC	1 cut(s)	957
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	300
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	4 cut(s)	45, 782, 837, 885
Sse9I	AATT	7 cut(s)	64, 178, 374, 512, 522, 620, 856
SsiI	CCGC	1 cut(s)	848
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	8, 886
TaqI	TCGA	2 cut(s)	34, 484
TasI	AATT	7 cut(s)	64, 178, 374, 512, 522, 620, 856
TfiI	GAWTC	2 cut(s)	426, 616
Tru1I	TTAA	3 cut(s)	294, 516, 666
Tru9I	TTAA	3 cut(s)	294, 516, 666
TscAI	CASTG	3 cut(s)	370, 708, 846
TseFI	GTSAC	2 cut(s)	50, 699
TseI	GCWGC	4 cut(s)	392, 784, 898, 951
Tsp45I	GTSAC	2 cut(s)	50, 699
TspDTI	ATGAA	5 cut(s)	17, 191, 320, 927, 945
TspRI	CASTG	3 cut(s)	370, 708, 846
XapI	RAATTY	2 cut(s)	178, 512
XceI	RCATGY	2 cut(s)	479, 797
XmiI	GTMKAC	2 cut(s)	351, 764
XmnI	GAANNNNTTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.