Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Reverse (-)

7557129 .. 7579426

Gene Structure 22298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG101000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGAACTGTGGAGGAAATGAGGACTTGGAATATCGAGCAGCATCGGCTGTAGGTGACGTGAATGCAAATTATGTTACCGCTTTGCCCCCTATGAGTCGTTGGTATGGTCAGATTTCTGCTCCTCCCGATATTATAAGTAGAGATGGCGCAAAGGAACAAATGGTGTGCAACAACCAGATGAATTCGGAGGATTTTTCTGGTTATATTTTTATGTGTAATGGACGAACAAAACCAGAATGCTATATGTACCGAGTTTTCGGACTTCCTGCTGGAAGAAGGGAAGTTATTGAGAAGATTAAGCCAGGGATGAAGCTATTTCTATTTGACTATGAGGTGAAGTATCTTTATGGGGTATACGAAGCAACCACTGCTGGAAAATTGAACTGGGACACAGCTGCTTTTGGTGGGAACTTCCCTGCACAGGTGAGATTCCATATCTACAAGGAATGTCTCCCTCTGCCAGAGAGTTGTTTCAAACACGCTATTCGAGATAACTACCAGACAGGCTCCAAAAAATTTAATCCAATTCTCAGTAGCCAACAAGTAAGTCATCTAGTATCAATGTTCAATCCTCTTACAAAGCCGTCATCTGCTAAATGTGACCATTACCCTGTAAAGAATCAATTTCAATCCCATTCAAGGCTTCCTCCTCCAAGTTATCCATACTTTAACTTGATAAACACCAGTCATGCACCACAAGCGTCACTGCCTCCAAGCTATTCTTCCATGTATGGCAGACTTACTTCACCAGCCTTGGAGCCTCAGTATACTCAAACGAGTGTCCTGCAGCCAGAACATGTTGGTTATGGATATGCACCACAGATGGGCTACATTAATCCTGCAGTGCAACCGCAAGCCAATTCAGCTCCATATCAGACATCTTATACTGTAGAAGCTGGGCAGCCGTACTTGCATGAAGTACCCAAATCATATGAAAGGTATGAGGCTGCTGCACAGGCTATGGTTCCTACTCATCAATACACTGACTGGAGATATGAGTACAATCAGTTACCGTCACAGACCCATATGCAGATGCAGGAGAATGCTGCTCAACACCAGAGTCTCTATCAAGTGCCTGCAGCCCATCATGTTACACAGCCTATACAACAACACGCATCGAGATTCGAAGAGCCTGGGCCTGCTGTGAGGACTCTTCCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

387

Amino Acids

43.74

Weight (kDa)

6.91

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	67 - 189	7.9e-48	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	134
AccI	GTMKAC	2 cut(s)	354, 767
AciI	CCGC	2 cut(s)	78, 851
AcsI	RAATTY	2 cut(s)	181, 515
AfaI	GTAC	4 cut(s)	248, 908, 921, 1001
AfiI	CCNNNNNNNGG	3 cut(s)	421, 639, 824
AflIII	ACRYGT	1 cut(s)	796
AgsI	TTSAA	5 cut(s)	382, 475, 568, 629, 639
AjiI	CACGTC	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	301, 1132
AjuI	GAANNNNNNNTTGG	2 cut(s)	706, 738
AluBI	AGCT	5 cut(s)	313, 395, 717, 866, 896
AluI	AGCT	5 cut(s)	313, 395, 717, 866, 896
Alw26I	GTCTC	2 cut(s)	455, 1067
AoxI	GGCC	1 cut(s)	1136
ApeKI	GCWGC	8 cut(s)	38, 395, 787, 901, 947, 950, 1046, 1079
ApoI	RAATTY	2 cut(s)	181, 515
AseI	ATTAAT	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	1136
AsuHPI	GGTGA	4 cut(s)	65, 346, 436, 738
AsuII	TTCGAA	1 cut(s)	1125
BbvI	GCAGC	8 cut(s)	50, 382, 799, 913, 934, 937, 1033, 1091
BccI	CCATC	3 cut(s)	137, 817, 1092
BceAI	ACGGC	2 cut(s)	568, 889
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BciT130I	CCWGG	2 cut(s)	303, 1134
BcoDI	GTCTC	2 cut(s)	455, 1067
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	5 cut(s)	48, 785, 840, 888, 1077
BisI	GCNGC	8 cut(s)	39, 396, 788, 902, 948, 951, 1047, 1080
BlsI	GCNGC	8 cut(s)	40, 397, 789, 903, 949, 952, 1048, 1081
Bme1390I	CCNGG	2 cut(s)	303, 1134
BmgBI	CACGTC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	1136
BmiI	GGNNCC	3 cut(s)	508, 759, 966
BmrFI	CCNGG	2 cut(s)	303, 1134
BmrI	ACTGGG	1 cut(s)	394
BmsI	GCATC	3 cut(s)	50, 1023, 1124
BmuI	ACTGGG	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	1009
Bpu14I	TTCGAA	1 cut(s)	1125
BsaJI	CCNNGG	3 cut(s)	302, 753, 1133
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 639, 824
Bse1I	ACTGG	3 cut(s)	389, 684, 992
BseBI	CCWGG	2 cut(s)	303, 1134
BseDI	CCNNGG	3 cut(s)	302, 753, 1133
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	421, 639, 824
BseMII	CTCAG	2 cut(s)	544, 776
BseNI	ACTGG	3 cut(s)	389, 684, 992
BseRI	GAGGAG	2 cut(s)	111, 639
BseXI	GCAGC	8 cut(s)	50, 382, 799, 913, 934, 937, 1033, 1091
BseYI	CCCAGC	1 cut(s)	896
BsgI	GTGCAG	2 cut(s)	402, 936
BshFI	GGCC	1 cut(s)	1138
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	421, 639, 824
BsmAI	GTCTC	2 cut(s)	455, 1067
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	3 cut(s)	67, 242, 1048
BsnI	GGCC	1 cut(s)	1138
Bsp119I	TTCGAA	1 cut(s)	1125
BspACI	CCGC	2 cut(s)	78, 851
BspANI	GGCC	1 cut(s)	1138
BspCNI	CTCAG	2 cut(s)	543, 775
BspLI	GGNNCC	3 cut(s)	508, 759, 966
BspMAI	CTGCAG	3 cut(s)	789, 844, 1081
BspQI	GCTCTTC	1 cut(s)	1122
BspT104I	TTCGAA	1 cut(s)	1125
BsrI	ACTGG	3 cut(s)	389, 684, 992
BssECI	CCNNGG	3 cut(s)	302, 753, 1133
BssNAI	GTATAC	2 cut(s)	355, 768
BssT1I	CCWWGG	1 cut(s)	753
Bst1107I	GTATAC	2 cut(s)	355, 768
Bst2UI	CCWGG	2 cut(s)	303, 1134
Bst4CI	ACNGT	3 cut(s)	8, 889, 1014
Bst6I	CTCTTC	2 cut(s)	1122, 1158
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	1125
BstC8I	GCNNGC	3 cut(s)	855, 1077, 1140
BstDEI	CTNAG	2 cut(s)	530, 762
BstF5I	GGATG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	149
BstMAI	GTCTC	2 cut(s)	455, 1067
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 368, 698, 863, 910, 956
BstNI	CCWGG	2 cut(s)	303, 1134
BstNSI	RCATGY	1 cut(s)	800
BstSCI	CCNGG	2 cut(s)	301, 1132
BstSFI	CTRYAG	5 cut(s)	48, 785, 840, 888, 1077
BstV1I	GCAGC	8 cut(s)	50, 382, 799, 913, 934, 937, 1033, 1091
BstZ17I	GTATAC	2 cut(s)	355, 768
BsuRI	GGCC	1 cut(s)	1138
BtrI	CACGTC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	312
BtsI	GCAGTG	3 cut(s)	366, 704, 849
BtsIMutI	CAGTG	4 cut(s)	366, 704, 849, 981
Cac8I	GCNNGC	3 cut(s)	855, 1077, 1140
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	1136
CseI	GACGC	1 cut(s)	690
Csp6I	GTAC	4 cut(s)	247, 907, 920, 1000
CviAII	CATG	5 cut(s)	689, 727, 797, 914, 1088
CviQI	GTAC	4 cut(s)	247, 907, 920, 1000
DdeI	CTNAG	2 cut(s)	530, 762
Eam1104I	CTCTTC	2 cut(s)	1122, 1158
EarI	CTCTTC	2 cut(s)	1122, 1158
Eco130I	CCWWGG	1 cut(s)	753
EcoRI	GAATTC	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	301, 1132
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	5 cut(s)	692, 730, 800, 917, 1091
FalI	AAGNNNNNCTT	2 cut(s)	706, 738
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	5 cut(s)	688, 726, 796, 913, 1087
FauNDI	CATATG	2 cut(s)	931, 1026
FblI	GTMKAC	2 cut(s)	354, 767
Fnu4HI	GCNGC	8 cut(s)	39, 396, 788, 902, 948, 951, 1047, 1080
FokI	GGATG	1 cut(s)	319
Fsp4HI	GCNGC	8 cut(s)	39, 396, 788, 902, 948, 951, 1047, 1080
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	8 cut(s)	39, 396, 788, 902, 948, 951, 1047, 1080
GsaI	CCCAGC	1 cut(s)	900
GsuI	CTGGAG	1 cut(s)	1009
HaeIII	GGCC	1 cut(s)	1138
HgaI	GACGC	1 cut(s)	690
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	5 cut(s)	692, 730, 800, 917, 1091
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	6 cut(s)	94, 429, 619, 1060, 1122, 1150
HphI	GGTGA	4 cut(s)	65, 346, 436, 738
Hpy166II	GTNNAC	2 cut(s)	355, 768
Hpy188I	TCNGA	4 cut(s)	111, 187, 260, 876
Hpy188III	TCNNGA	3 cut(s)	125, 488, 1119
Hpy8I	GTNNAC	2 cut(s)	355, 768
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	3 cut(s)	8, 889, 1014
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 368, 698, 863, 910, 956
HpyF3I	CTNAG	2 cut(s)	530, 762
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	692, 730, 800, 917, 1091
HspAI	GCGC	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	1122
LmnI	GCTCC	4 cut(s)	124, 512, 757, 871
Lsp1109I	GCAGC	8 cut(s)	50, 382, 799, 913, 934, 937, 1033, 1091
LweI	GCATC	3 cut(s)	50, 1023, 1124
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	7 cut(s)	53, 73, 599, 702, 1008, 1014, 1090
MboII	GAAGA	5 cut(s)	285, 304, 714, 1139, 1145
MluCI	AATT	7 cut(s)	67, 181, 377, 515, 525, 623, 859
MlyI	GAGTC	3 cut(s)	103, 1069, 1144
MseI	TTAA	4 cut(s)	297, 519, 669, 834
MspA1I	CMGCKG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	303, 1134
Mva1269I	GAATGC	3 cut(s)	67, 242, 1048
MvaI	CCWGG	2 cut(s)	303, 1134
MwoI	GCNNNNNNNGC	6 cut(s)	44, 368, 698, 863, 910, 956
NdeI	CATATG	2 cut(s)	931, 1026
NlaIII	CATG	5 cut(s)	692, 730, 800, 917, 1091
NlaIV	GGNNCC	3 cut(s)	508, 759, 966
NmuCI	GTSAC	4 cut(s)	53, 599, 702, 1014
NspI	RCATGY	1 cut(s)	800
NspV	TTCGAA	1 cut(s)	1125
PciI	ACATGT	1 cut(s)	796
PciSI	GCTCTTC	1 cut(s)	1122
PctI	GAATGC	3 cut(s)	67, 242, 1048
PfeI	GAWTC	3 cut(s)	429, 619, 1122
PkrI	GCNGC	8 cut(s)	40, 397, 789, 903, 949, 952, 1048, 1081
PleI	GAGTC	3 cut(s)	102, 1068, 1144
PpsI	GAGTC	3 cut(s)	102, 1068, 1144
PscI	ACATGT	1 cut(s)	796
PshBI	ATTAAT	1 cut(s)	834
PsiI	TTATAA	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	301, 1132
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	2 cut(s)	301, 1132
PspN4I	GGNNCC	3 cut(s)	508, 759, 966
PspPI	GGNCC	1 cut(s)	1136
PstI	CTGCAG	3 cut(s)	789, 844, 1081
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	4 cut(s)	248, 908, 921, 1001
RsaNI	GTAC	4 cut(s)	247, 907, 920, 1000
SapI	GCTCTTC	1 cut(s)	1122
SaqAI	TTAA	4 cut(s)	297, 519, 669, 834
SatI	GCNGC	8 cut(s)	39, 396, 788, 902, 948, 951, 1047, 1080
Sau96I	GGNCC	1 cut(s)	1136
SchI	GAGTC	3 cut(s)	103, 1069, 1144
ScrFI	CCNGG	2 cut(s)	303, 1134
SfaNI	GCATC	3 cut(s)	50, 1023, 1124
SfcI	CTRYAG	5 cut(s)	48, 785, 840, 888, 1077
SfuI	TTCGAA	1 cut(s)	1125
Sse9I	AATT	7 cut(s)	67, 181, 377, 515, 525, 623, 859
SsiI	CCGC	2 cut(s)	78, 851
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	301, 1132
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	3 cut(s)	8, 889, 1014
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	4 cut(s)	34, 487, 1118, 1125
TasI	AATT	7 cut(s)	67, 181, 377, 515, 525, 623, 859
TatI	WGTACW	1 cut(s)	999
TfiI	GAWTC	3 cut(s)	429, 619, 1122
Tru1I	TTAA	4 cut(s)	297, 519, 669, 834
Tru9I	TTAA	4 cut(s)	297, 519, 669, 834
TscAI	CASTG	4 cut(s)	373, 711, 849, 988
TseFI	GTSAC	4 cut(s)	53, 599, 702, 1014
TseI	GCWGC	8 cut(s)	38, 395, 787, 901, 947, 950, 1046, 1079
Tsp45I	GTSAC	4 cut(s)	53, 599, 702, 1014
TspDTI	ATGAA	5 cut(s)	17, 194, 323, 930, 948
TspRI	CASTG	4 cut(s)	373, 711, 849, 988
VspI	ATTAAT	1 cut(s)	834
XapI	RAATTY	2 cut(s)	181, 515
XceI	RCATGY	1 cut(s)	800
XmiI	GTMKAC	2 cut(s)	354, 767
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.