Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Reverse (-)

61038458 .. 61041051

Gene Structure 2594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0492700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGAATCTGCATATCCTGCTCAGTTTCAGGTCAAAAGATTCAAGATGGCAATGAAAATGCAATGTTCTTTGGAAAGAACAGTGGTTCTTTTGGGACTCAGAGCCTTGGTTCGCTTTATTCTAAGGAAGGAAGCAAAGGACTAAACCAAGACAGTGCCATTCTTTACCAGGGCTATGGAGTTGGAGATTCATCTTTCTGTGGAGTATTTGATGGGCATGGAAAGAATGGTCACATAGTGAGTGAGATGGTGAAGAATCACCTACCAGCACTACTACAGAGCCAAATGGAAGCTCTTGAACAAGTCACTTTAGTAACACAATCAGATGGTGAACAAAATCTTAACGACGAAACGGATACTGAATCAGAACCAAGCAAGAACTTTGATAAGTGGGAAGAGGCACTGGTTAATGCCTTCAAAGTAATGGACAAGGAGATTAAGCTCCAAGAAAATTTGGACTGTTCTTGTAGTGGAAGCACTGCTGTTGTTGTCATAAGACAGGGCGAGGACCTTTTTATAGCTAACTTGGGTGACTCGAGAGCCATCCTGGGAACAATGACTGAGAAAGGAATTGAAGGCATTCAATTAACCACTGATCTAAAGCCTGGTTTACCAAATGAAGCAGAACGAATAAGAGCATGCAATGGTCGAGTGATTGCACTAGAACACGAAAAACACATCCAGAGAGTGTGGTTGCCCCATGAATTCCTTCCAGGCCTAGCCATGTCGCGAGCTTTTGGGGACTTTGTACTCAAAGATTATGGCATCATTGCCGTCCCTGATGTCTCCCATCATCGCCTGACCTCCGAAAATCAGTTCATTGTTCTTGCAACTGATGGGGTATGGGATGTGCTTAGTAACAATGAAGTTGCGTCTATTGTGTGGGAAGCCGAGAGTGCAGAGGCAGCTGCTAGGACTGTGACTGAGACGGCTAGAGCCACATGGAGCACAAAGTACCCAACTTCTAAGATAGACGACTGCACTGTGGTTTGCCTGTTTTTCAGTTCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

337

Amino Acids

36.76

Weight (kDa)

4.75

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	64 - 313	1.1e-43	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	730
AcsI	RAATTY	2 cut(s)	451, 704
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	750, 956
AgsI	TTSAA	5 cut(s)	44, 299, 418, 575, 584
AjnI	CCWGG	4 cut(s)	168, 546, 604, 712
AluBI	AGCT	5 cut(s)	293, 442, 521, 734, 908
AluI	AGCT	5 cut(s)	293, 442, 521, 734, 908
Alw21I	GWGCWC	1 cut(s)	950
Alw26I	GTCTC	2 cut(s)	790, 920
Ama87I	CYCGRG	1 cut(s)	535
AoxI	GGCC	1 cut(s)	715
ApeKI	GCWGC	2 cut(s)	905, 908
ApoI	RAATTY	2 cut(s)	451, 704
Asp700I	GAANNNNTTC	2 cut(s)	579, 708
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	4 cut(s)	251, 262, 341, 542
AvaI	CYCGRG	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	950
BbvI	GCAGC	2 cut(s)	895, 917
BccI	CCATC	7 cut(s)	41, 206, 241, 320, 551, 798, 830
BceAI	ACGGC	2 cut(s)	758, 945
BciT130I	CCWGG	4 cut(s)	170, 548, 606, 714
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	790, 920
BfaI	CTAG	4 cut(s)	662, 719, 912, 933
BfmI	CTRYAG	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	906, 909
BlsI	GCNGC	2 cut(s)	907, 910
Bme1390I	CCNGG	4 cut(s)	170, 548, 606, 714
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	508
BmrFI	CCNGG	4 cut(s)	170, 548, 606, 714
BmsI	GCATC	1 cut(s)	774
BsaJI	CCNNGG	3 cut(s)	106, 169, 547
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	4 cut(s)	58, 69, 649, 768
BseBI	CCWGG	4 cut(s)	170, 548, 606, 714
BseDI	CCNNGG	3 cut(s)	106, 169, 547
BseGI	GGATG	3 cut(s)	543, 678, 853
BseMI	GCAATG	4 cut(s)	58, 69, 649, 768
BseMII	CTCAG	4 cut(s)	36, 113, 552, 915
BseNI	ACTGG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	895, 917
BsgI	GTGCAG	2 cut(s)	918, 964
Bsh1236I	CGCG	1 cut(s)	730
BshFI	GGCC	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	950
BsiHKCI	CYCGRG	1 cut(s)	535
BslFI	GGGAC	3 cut(s)	109, 755, 761
BsmAI	GTCTC	2 cut(s)	790, 920
BsmBI	CGTCTC	1 cut(s)	920
BsmFI	GGGAC	3 cut(s)	109, 755, 761
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	717
BsoBI	CYCGRG	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp143I	GATC	1 cut(s)	595
Bsp68I	TCGCGA	1 cut(s)	730
BspANI	GGCC	1 cut(s)	717
BspCNI	CTCAG	4 cut(s)	35, 112, 553, 916
BspFNI	CGCG	1 cut(s)	730
BsrDI	GCAATG	4 cut(s)	58, 69, 649, 768
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	3 cut(s)	106, 169, 547
BssMI	GATC	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	4 cut(s)	170, 548, 606, 714
Bst4CI	ACNGT	5 cut(s)	83, 155, 461, 919, 985
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	640, 732
BstDEI	CTNAG	7 cut(s)	22, 99, 123, 561, 854, 924, 966
BstF5I	GGATG	3 cut(s)	543, 678, 853
BstFNI	CGCG	1 cut(s)	730
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	2 cut(s)	790, 920
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 896, 905
BstNI	CCWGG	4 cut(s)	170, 548, 606, 714
BstNSI	RCATGY	1 cut(s)	642
BstSCI	CCNGG	4 cut(s)	168, 546, 604, 712
BstSFI	CTRYAG	1 cut(s)	275
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	2 cut(s)	895, 917
BstXI	CCANNNNNNTGG	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	717
BtgZI	GCGATG	1 cut(s)	779
BtsCI	GGATG	3 cut(s)	543, 678, 853
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	6 cut(s)	88, 160, 401, 477, 591, 981
BtuMI	TCGCGA	1 cut(s)	730
Cac8I	GCNNGC	2 cut(s)	640, 732
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	1 cut(s)	861
Csp6I	GTAC	2 cut(s)	749, 955
CviAII	CATG	5 cut(s)	218, 639, 701, 724, 942
CviQI	GTAC	2 cut(s)	749, 955
DdeI	CTNAG	7 cut(s)	22, 99, 123, 561, 854, 924, 966
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
DraIII	CACNNNGTG	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	704
EcoRII	CCWGG	4 cut(s)	168, 546, 604, 712
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	920
FaeI	CATG	5 cut(s)	221, 642, 704, 727, 945
FaqI	GGGAC	3 cut(s)	109, 755, 761
FatI	CATG	5 cut(s)	217, 638, 700, 723, 941
Fnu4HI	GCNGC	2 cut(s)	906, 909
FokI	GGATG	3 cut(s)	530, 665, 860
Fsp4HI	GCNGC	2 cut(s)	906, 909
FspBI	CTAG	4 cut(s)	662, 719, 912, 933
GluI	GCNGC	2 cut(s)	906, 909
HaeIII	GGCC	1 cut(s)	717
HgaI	GACGC	1 cut(s)	861
Hin1II	CATG	5 cut(s)	221, 642, 704, 727, 945
HinfI	GANTC	7 cut(s)	6, 40, 97, 188, 256, 362, 533
HphI	GGTGA	4 cut(s)	251, 262, 341, 542
Hpy166II	GTNNAC	2 cut(s)	332, 611
Hpy188I	TCNGA	4 cut(s)	102, 325, 367, 808
Hpy188III	TCNNGA	5 cut(s)	44, 296, 537, 682, 729
Hpy8I	GTNNAC	2 cut(s)	332, 611
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	122, 424, 569, 719
HpyCH4III	ACNGT	5 cut(s)	83, 155, 461, 919, 985
HpyCH4V	TGCA	7 cut(s)	12, 62, 642, 659, 830, 899, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 896, 905
HpyF3I	CTNAG	7 cut(s)	22, 99, 123, 561, 854, 924, 966
Hsp92II	CATG	5 cut(s)	221, 642, 704, 727, 945
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	2 cut(s)	447, 945
Lsp1109I	GCAGC	2 cut(s)	895, 917
LweI	GCATC	1 cut(s)	774
MaeI	CTAG	4 cut(s)	662, 719, 912, 933
MaeIII	GTNAC	6 cut(s)	230, 304, 313, 530, 857, 919
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	2 cut(s)	265, 407
MhlI	GDGCHC	1 cut(s)	950
MluCI	AATT	4 cut(s)	451, 570, 584, 704
MlyI	GAGTC	2 cut(s)	91, 527
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	391, 499, 814, 895
MroXI	GAANNNNTTC	2 cut(s)	579, 708
MseI	TTAA	4 cut(s)	342, 408, 438, 587
MspA1I	CMGCKG	1 cut(s)	908
MspR9I	CCNGG	4 cut(s)	170, 548, 606, 714
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	4 cut(s)	170, 548, 606, 714
MvnI	CGCG	1 cut(s)	730
MwoI	GCNNNNNNNGC	3 cut(s)	18, 896, 905
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	5 cut(s)	221, 642, 704, 727, 945
NmeAIII	GCCGAG	1 cut(s)	916
NmuCI	GTSAC	4 cut(s)	230, 304, 530, 919
NruI	TCGCGA	1 cut(s)	730
NspI	RCATGY	1 cut(s)	642
PaeI	GCATGC	1 cut(s)	642
PaeR7I	CTCGAG	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	717
PctI	GAATGC	1 cut(s)	579
PdmI	GAANNNNTTC	2 cut(s)	579, 708
PfeI	GAWTC	5 cut(s)	6, 40, 188, 256, 362
PkrI	GCNGC	2 cut(s)	907, 910
PleI	GAGTC	2 cut(s)	91, 527
PpsI	GAGTC	2 cut(s)	91, 527
PpuMI	RGGWCCY	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	4 cut(s)	168, 546, 604, 712
PspGI	CCWGG	4 cut(s)	168, 546, 604, 712
PspPI	GGNCC	1 cut(s)	508
PspPPI	RGGWCCY	1 cut(s)	508
PvuII	CAGCTG	1 cut(s)	908
RruI	TCGCGA	1 cut(s)	730
RsaI	GTAC	2 cut(s)	750, 956
RsaNI	GTAC	2 cut(s)	749, 955
SaqAI	TTAA	4 cut(s)	342, 408, 438, 587
SatI	GCNGC	2 cut(s)	906, 909
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	2 cut(s)	91, 527
ScrFI	CCNGG	4 cut(s)	170, 548, 606, 714
SduI	GDGCHC	1 cut(s)	950
SetI	ASST	9 cut(s)	34, 264, 295, 444, 513, 523, 736, 806, 910
SfaNI	GCATC	1 cut(s)	774
SfcI	CTRYAG	1 cut(s)	275
Sfr274I	CTCGAG	1 cut(s)	535
SinI	GGWCC	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
SphI	GCATGC	1 cut(s)	642
Sse9I	AATT	4 cut(s)	451, 570, 584, 704
SseBI	AGGCCT	1 cut(s)	717
SspMI	CTAG	4 cut(s)	662, 719, 912, 933
StuI	AGGCCT	1 cut(s)	717
StyD4I	CCNGG	4 cut(s)	168, 546, 604, 712
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	5 cut(s)	83, 155, 461, 919, 985
TaqI	TCGA	2 cut(s)	536, 649
TasI	AATT	4 cut(s)	451, 570, 584, 704
TatI	WGTACW	1 cut(s)	748
TfiI	GAWTC	5 cut(s)	6, 40, 188, 256, 362
Tru1I	TTAA	4 cut(s)	342, 408, 438, 587
Tru9I	TTAA	4 cut(s)	342, 408, 438, 587
TscAI	CASTG	6 cut(s)	88, 160, 408, 484, 598, 988
TseFI	GTSAC	4 cut(s)	230, 304, 530, 919
TseI	GCWGC	2 cut(s)	905, 908
Tsp45I	GTSAC	4 cut(s)	230, 304, 530, 919
TspDTI	ATGAA	7 cut(s)	69, 180, 633, 717, 808, 879, 996
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	6 cut(s)	88, 160, 408, 484, 598, 988
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	2 cut(s)	451, 704
XceI	RCATGY	1 cut(s)	642
XhoI	CTCGAG	1 cut(s)	535
XmnI	GAANNNNTTC	2 cut(s)	579, 708
XspI	CTAG	4 cut(s)	662, 719, 912, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.