Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8242699.1

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 770

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8242699.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

gtcaggtttaagatttccaaggattgtttaccacttcacgaaagttcttttaaaacagccataagagacaattaccagggcggtggtaagtttaaacaagagctgaataacaaacaggtgcgtgctctaatctcattgttccgcccaatcactgcatcaatgcctacttctgctgcccatcaccgagatgtggcaagaacaggctcatatccatctcctattagggaagaaggatttcatccaacagcaaggccgtctcttcaagagggcttatatttatctagcgtacaacatgctcatgcattgccacttcttaatacgcaatccatacaggttgttccatatccacgttttaaaaaatatgaagcagaaagatgtgtggcacgtgttcagcctcccatagagcctagacatgttgttcagcatcagccagattcatattatctagcagcggcccatgagccatacgtgcctgaaaaacctttcttgtcctcccatgatgcatatagaaggtattttcctctgccacaactttgtacaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

181

Amino Acids

20.67

Weight (kDa)

9.51

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	81, 142, 452
AcvI	CACGTG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	288, 538
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	2 cut(s)	385, 412
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	60, 261
AoxI	GGCC	2 cut(s)	251, 453
ApeKI	GCWGC	2 cut(s)	173, 449
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	160, 461
BccI	CCATC	2 cut(s)	186, 220
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	60, 261
BfaI	CTAG	3 cut(s)	282, 408, 446
BisI	GCNGC	3 cut(s)	174, 450, 453
BlsI	GCNGC	3 cut(s)	175, 451, 454
Bme1390I	CCNGG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	3 cut(s)	164, 433, 490
BsaAI	YACGTR	2 cut(s)	386, 469
BsaJI	CCNNGG	2 cut(s)	18, 76
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	18, 76
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	160, 461
BshFI	GGCC	2 cut(s)	253, 455
BsiHKAI	GWGCWC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	60, 261
BsmBI	CGTCTC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	253, 455
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	536
BspACI	CCGC	3 cut(s)	81, 142, 452
BspANI	GGCC	2 cut(s)	253, 455
BsrDI	GCAATG	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	18, 76
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	536
BstBAI	YACGTR	2 cut(s)	386, 469
BstC8I	GCNNGC	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	238
BstMAI	GTCTC	2 cut(s)	60, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	296, 416
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	160, 461
BstXI	CCANNNNNNTGG	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	253, 455
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	287, 537
CviAII	CATG	5 cut(s)	293, 299, 413, 458, 497
CviQI	GTAC	2 cut(s)	287, 537
DraI	TTTAAA	3 cut(s)	52, 94, 355
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	2 cut(s)	304, 505
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	5 cut(s)	296, 302, 416, 461, 500
FatI	CATG	5 cut(s)	292, 298, 412, 457, 496
Fnu4HI	GCNGC	3 cut(s)	174, 450, 453
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	174, 450, 453
FspBI	CTAG	3 cut(s)	282, 408, 446
GluI	GCNGC	3 cut(s)	174, 450, 453
HaeIII	GGCC	2 cut(s)	253, 455
Hin1II	CATG	5 cut(s)	296, 302, 416, 461, 500
HinfI	GANTC	1 cut(s)	434
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188III	TCNNGA	2 cut(s)	38, 263
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	224, 504
HpyCH4IV	ACGT	3 cut(s)	349, 385, 468
HpyCH4V	TGCA	3 cut(s)	155, 302, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpySE526I	ACGT	3 cut(s)	349, 385, 468
Hsp92II	CATG	5 cut(s)	296, 302, 416, 461, 500
LpnPI	CCDG	7 cut(s)	62, 89, 101, 186, 317, 444, 486
Lsp1109I	GCAGC	2 cut(s)	160, 461
LweI	GCATC	3 cut(s)	164, 433, 490
MaeI	CTAG	3 cut(s)	282, 408, 446
MaeII	ACGT	3 cut(s)	349, 385, 468
MboII	GAAGA	2 cut(s)	239, 251
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	2 cut(s)	70, 540
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	4 cut(s)	259, 405, 502, 531
Mph1103I	ATGCAT	2 cut(s)	304, 505
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	5 cut(s)	9, 51, 93, 315, 354
MslI	CAYNNNNRTG	2 cut(s)	186, 297
MspA1I	CMGCKG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	77
MssI	GTTTAAAC	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	469
NlaIII	CATG	5 cut(s)	296, 302, 416, 461, 500
NsiI	ATGCAT	2 cut(s)	304, 505
NspI	RCATGY	2 cut(s)	296, 416
PciI	ACATGT	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	3 cut(s)	175, 451, 454
PmaCI	CACGTG	1 cut(s)	386
PmeI	GTTTAAAC	1 cut(s)	94
PmlI	CACGTG	1 cut(s)	386
Ppu21I	YACGTR	2 cut(s)	386, 469
PscI	ACATGT	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	75
PspCI	CACGTG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	454
RsaI	GTAC	2 cut(s)	288, 538
RsaNI	GTAC	2 cut(s)	287, 537
RseI	CAYNNNNRTG	2 cut(s)	186, 297
SaqAI	TTAA	5 cut(s)	9, 51, 93, 315, 354
SatI	GCNGC	3 cut(s)	174, 450, 453
Sau96I	GGNCC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	9 cut(s)	8, 105, 120, 336, 352, 388, 471, 484, 515
SfaNI	GCATC	3 cut(s)	164, 433, 490
SmiMI	CAYNNNNRTG	2 cut(s)	186, 297
Sse9I	AATT	2 cut(s)	70, 540
SsiI	CCGC	3 cut(s)	81, 142, 452
SspMI	CTAG	3 cut(s)	282, 408, 446
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	3 cut(s)	352, 388, 471
TasI	AATT	2 cut(s)	70, 540
TatI	WGTACW	1 cut(s)	536
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	5 cut(s)	9, 51, 93, 315, 354
Tru9I	TTAA	5 cut(s)	9, 51, 93, 315, 354
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	2 cut(s)	173, 449
TspDTI	ATGAA	3 cut(s)	227, 378, 426
TspRI	CASTG	1 cut(s)	157
XceI	RCATGY	2 cut(s)	296, 416
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	282, 408, 446
Zsp2I	ATGCAT	2 cut(s)	304, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.