Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Reverse (-)

39454844 .. 39455629

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0230200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTTCTCCCTGAATTCGCTGCCGGAGAAGTACTGAGTAAGGTGACTTCACTCTCTACTGATGAATTGAGACTCGATATCGTCTGGGGGTTCCGCAAAGAGATAGATAAGCTCAAAGAAACCTCAACCCTGATTGGAGATATAATCCATGATGCTTCTCATGAACCTGAAGATCCGGAACTGCGGGCAAGGGCCAATTGGATGAAGAAGCTTATAAGCGTAGCTTATAATGCAGACGATATTCTGGATGAAATAGAATATGAGGTTCAGCGTATCGTTATAAAGGAGACAAGCCTGGATAAGAAGATACTCGGCTTCTTCTGTAACAATCCTGTTGTATTTCGTCTCAAGATGGCACGCAAGATTTACAACATCAACACTTCCTTGGAGGGTCTCTACAAGCAAGCAGATGGCGTGGGATTCGTCAGATCAAATGGAGGTGCAGCAGCAAGTCAAGGTAGGCGGCACAGGGAAACAACCGCATTCCCAGAGAAAATTGAATTCACCCAGAAAGATGCAAAATTTTTTGGAAGGGTTCAGGTTGTGAGAGATATAATTGCAATCTTGACCAACTCCCACAATGAAGAAAATAATCCTTCAGTGATGGCTATTGTAGGATTGGGAGGCCTAGGTAAAACAACTTTGGCTCGCTCAATTACCCAGCAACTGAAAGAAGATGAAATGAAAAGGTACTTTGATGCAACATTCTGGGTGTATGTATCTAATATTTTTGATGTCAACTCAATTTTACATCGAATGGTGCAATCATGTGGCTGTAGACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

261

Amino Acids

29.65

Weight (kDa)

6.61

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	9 - 91	7.8e-13	Rx N-terminal domain
NB-ARC	PF00931	193 - 256	2e-12	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	215, 228, 281
AccI	GTMKAC	1 cut(s)	778
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	4 cut(s)	94, 184, 463, 480
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	3 cut(s)	14, 500, 521
AcuI	CTGAAG	2 cut(s)	189, 582
AfaI	GTAC	2 cut(s)	33, 692
AgsI	TTSAA	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	112, 211, 224
AluI	AGCT	3 cut(s)	112, 211, 224
Alw26I	GTCTC	4 cut(s)	64, 281, 350, 398
AlwI	GGATC	1 cut(s)	167
AlwNI	CAGNNNCTG	1 cut(s)	667
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	2 cut(s)	192, 625
ApeKI	GCWGC	3 cut(s)	20, 443, 446
ApoI	RAATTY	3 cut(s)	14, 500, 521
AspA2I	CCTAGG	1 cut(s)	628
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	55, 496
AvrII	CCTAGG	1 cut(s)	628
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbvI	GCAGC	3 cut(s)	7, 455, 458
BccI	CCATC	3 cut(s)	346, 404, 598
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	4 cut(s)	64, 281, 350, 398
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	775
BisI	GCNGC	4 cut(s)	21, 444, 447, 464
BlnI	CCTAGG	1 cut(s)	628
BlsI	GCNGC	4 cut(s)	22, 445, 448, 465
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	3 cut(s)	142, 505, 688
BpuEI	CTTGAG	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	384, 628
BsaWI	WCCGGW	1 cut(s)	175
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	384, 628
BseGI	GGATG	2 cut(s)	207, 253
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	7, 455, 458
BseYI	CCCAGC	1 cut(s)	660
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	194, 627
BsiSI	CCGG	2 cut(s)	24, 176
BsmAI	GTCTC	4 cut(s)	64, 281, 350, 398
BsmBI	CGTCTC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	194, 627
Bso31I	GGTCTC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	172, 428
BspACI	CCGC	4 cut(s)	94, 184, 463, 480
BspANI	GGCC	2 cut(s)	194, 627
BspCNI	CTCAG	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	384, 628
BssMI	GATC	2 cut(s)	172, 428
BssT1I	CCWWGG	2 cut(s)	384, 628
Bst2UI	CCWGG	1 cut(s)	296
BstC8I	GCNNGC	4 cut(s)	186, 358, 405, 649
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	207, 253
BstKTI	GATC	2 cut(s)	175, 431
BstMAI	GTCTC	4 cut(s)	64, 281, 350, 398
BstMBI	GATC	2 cut(s)	172, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	775
BstV1I	GCAGC	3 cut(s)	7, 455, 458
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	194, 627
BtsCI	GGATG	2 cut(s)	207, 253
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	4 cut(s)	186, 358, 405, 649
CaiI	CAGNNNCTG	1 cut(s)	667
CciI	TCATGA	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	32, 691
CviAII	CATG	3 cut(s)	149, 161, 768
CviQI	GTAC	2 cut(s)	32, 691
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	2 cut(s)	174, 430
DpnII	GATC	2 cut(s)	172, 428
Eco130I	CCWWGG	2 cut(s)	384, 628
Eco147I	AGGCCT	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	189, 582
EcoRI	GAATTC	2 cut(s)	14, 500
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	384, 628
ErhI	CCWWGG	2 cut(s)	384, 628
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	3 cut(s)	152, 164, 771
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	3 cut(s)	148, 160, 767
FauI	CCCGC	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	778
Fnu4HI	GCNGC	4 cut(s)	21, 444, 447, 464
FokI	GGATG	2 cut(s)	214, 260
Fsp4HI	GCNGC	4 cut(s)	21, 444, 447, 464
FspBI	CTAG	1 cut(s)	629
GluI	GCNGC	4 cut(s)	21, 444, 447, 464
GsaI	CCCAGC	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	194, 627
HapII	CCGG	2 cut(s)	24, 176
Hin1II	CATG	3 cut(s)	152, 164, 771
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	72, 420
HpaII	CCGG	2 cut(s)	24, 176
HphI	GGTGA	2 cut(s)	55, 496
Hpy166II	GTNNAC	2 cut(s)	739, 779
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	5 cut(s)	161, 176, 245, 349, 565
Hpy8I	GTNNAC	2 cut(s)	739, 779
HpyAV	CCTTC	2 cut(s)	525, 606
HpyCH4V	TGCA	6 cut(s)	233, 443, 518, 560, 701, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	152, 164, 771
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	172, 428
Lsp1109I	GCAGC	3 cut(s)	7, 455, 458
LweI	GCATC	3 cut(s)	142, 505, 688
MaeI	CTAG	1 cut(s)	629
MaeIII	GTNAC	2 cut(s)	43, 323
MalI	GATC	2 cut(s)	174, 430
MboI	GATC	2 cut(s)	172, 428
MboII	GAAGA	6 cut(s)	182, 217, 310, 316, 596, 686
MfeI	CAATTG	1 cut(s)	196
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	9 cut(s)	14, 65, 196, 495, 500, 521, 555, 654, 744
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	133, 256, 382, 431, 617
MroI	TCCGGA	1 cut(s)	175
MspI	CCGG	2 cut(s)	24, 176
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	2 cut(s)	172, 428
NlaIII	CATG	3 cut(s)	152, 164, 771
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	43
PagI	TCATGA	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	627
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	420
PkrI	GCNGC	4 cut(s)	22, 445, 448, 465
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PsiI	TTATAA	3 cut(s)	215, 228, 281
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	2 cut(s)	33, 692
RsaNI	GTAC	2 cut(s)	32, 691
SatI	GCNGC	4 cut(s)	21, 444, 447, 464
Sau3AI	GATC	2 cut(s)	172, 428
Sau96I	GGNCC	1 cut(s)	192
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	296
SfaNI	GCATC	3 cut(s)	142, 505, 688
SfcI	CTRYAG	1 cut(s)	775
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	9 cut(s)	14, 65, 196, 495, 500, 521, 555, 654, 744
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	4 cut(s)	94, 184, 463, 480
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	1 cut(s)	629
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	384, 628
TaqI	TCGA	2 cut(s)	75, 754
TasI	AATT	9 cut(s)	14, 65, 196, 495, 500, 521, 555, 654, 744
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	1 cut(s)	420
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	20, 443, 446
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	7 cut(s)	78, 177, 218, 264, 597, 693, 698
TspRI	CASTG	1 cut(s)	606
XapI	RAATTY	3 cut(s)	14, 500, 521
XmaJI	CCTAGG	1 cut(s)	628
XmiI	GTMKAC	1 cut(s)	778
XspI	CTAG	1 cut(s)	629
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.