Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Forward (+)

9940537 .. 9941819

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1130600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTTCCCAGGGATCAAGTTGTTTTGTATGGAAGCGAGCATGACATGCCCCAGTTGTCGAAGGAGAGAGAAAGTGATATTGCTCTGCGTTCCAATTATGTGGCCGAATCTTATAGTCGAGAGTTGCCCACCGCTGCAGCCTCACATGTTATGCTGCAGCCACATTCTTTAGCACCATCTTATGAACGAACATTAACGTACCAACGGTACTATCCAGTAACAACCCATCAGGATCAGAGCTTGATGTATGCTGATCCTCTTCAAAGACCATTGCATGGTACCTCTTACTCAGCTGAGGCAGATGTTCCAATCTCTACACATTATTGGTACGCTAGAGCTCCCAGTTACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

118

Amino Acids

13.49

Weight (kDa)

6.02

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	275
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	3 cut(s)	21, 240, 248
AcoI	YGGCCR	1 cut(s)	102
AfaI	GTAC	4 cut(s)	200, 209, 280, 329
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	3 cut(s)	240, 293, 338
AluI	AGCT	3 cut(s)	240, 293, 338
Alw21I	GWGCWC	1 cut(s)	340
AlwI	GGATC	3 cut(s)	21, 240, 248
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	4 cut(s)	134, 137, 154, 157
Asp718I	GGTACC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	340
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	121, 141, 149, 169
BccI	CCATC	2 cut(s)	184, 234
BciT130I	CCWGG	1 cut(s)	10
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	2 cut(s)	135, 155
BisI	GCNGC	4 cut(s)	135, 138, 155, 158
BlsI	GCNGC	4 cut(s)	136, 139, 156, 159
Bme1390I	CCNGG	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	6, 280
BmrFI	CCNGG	1 cut(s)	10
BmrI	ACTGGG	2 cut(s)	46, 336
BmuI	ACTGGG	2 cut(s)	46, 336
Bpu10I	CCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	8, 9
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	3 cut(s)	52, 215, 342
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	8, 9
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	285, 303
BseNI	ACTGG	3 cut(s)	52, 215, 342
BseXI	GCAGC	4 cut(s)	121, 141, 149, 169
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	275
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	3 cut(s)	13, 232, 253
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	286, 302
BspLI	GGNNCC	2 cut(s)	6, 280
BspMAI	CTGCAG	2 cut(s)	139, 159
BspPI	GGATC	3 cut(s)	21, 240, 248
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	3 cut(s)	52, 215, 342
BssECI	CCNNGG	2 cut(s)	8, 9
BssMI	GATC	3 cut(s)	13, 232, 253
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	289, 294
BstKTI	GATC	3 cut(s)	16, 235, 256
BstMBI	GATC	3 cut(s)	13, 232, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	2 cut(s)	49, 149
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	2 cut(s)	135, 155
BstV1I	GCAGC	4 cut(s)	121, 141, 149, 169
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	38
Csp6I	GTAC	4 cut(s)	199, 208, 279, 328
CviAII	CATG	4 cut(s)	41, 46, 146, 275
CviJI	RGCY	6 cut(s)	104, 140, 160, 240, 293, 338
CviKI_1	RGCY	6 cut(s)	104, 140, 160, 240, 293, 338
CviQI	GTAC	4 cut(s)	199, 208, 279, 328
DdeI	CTNAG	2 cut(s)	289, 294
DpnI	GATC	3 cut(s)	15, 234, 255
DpnII	GATC	3 cut(s)	13, 232, 253
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	8
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	4 cut(s)	44, 49, 149, 278
FatI	CATG	4 cut(s)	40, 45, 145, 274
Fnu4HI	GCNGC	4 cut(s)	135, 138, 155, 158
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	4 cut(s)	135, 138, 155, 158
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	4 cut(s)	135, 138, 155, 158
HaeIII	GGCC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	44, 49, 149, 278
HinfI	GANTC	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	119, 230
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	137, 157, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	2 cut(s)	289, 294
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	4 cut(s)	44, 49, 149, 278
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	3 cut(s)	13, 232, 253
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	4 cut(s)	22, 65, 215, 228
Lsp1109I	GCAGC	4 cut(s)	121, 141, 149, 169
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	2 cut(s)	217, 344
MalI	GATC	3 cut(s)	15, 234, 255
MboI	GATC	3 cut(s)	13, 232, 253
MboII	GAAGA	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	1 cut(s)	94
MnlI	CCTC	4 cut(s)	151, 267, 289, 292
MseI	TTAA	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	134, 293
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	3 cut(s)	13, 232, 253
NlaIII	CATG	4 cut(s)	44, 49, 149, 278
NlaIV	GGNNCC	2 cut(s)	6, 280
NspI	RCATGY	2 cut(s)	49, 149
PasI	CCCWGGG	1 cut(s)	9
PciI	ACATGT	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	136, 139, 156, 159
PscI	ACATGT	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	6, 280
PstI	CTGCAG	2 cut(s)	139, 159
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	4 cut(s)	200, 209, 280, 329
RsaNI	GTAC	4 cut(s)	199, 208, 279, 328
SacI	GAGCTC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	4 cut(s)	135, 138, 155, 158
Sau3AI	GATC	3 cut(s)	13, 232, 253
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	5 cut(s)	200, 242, 284, 295, 340
SfcI	CTRYAG	2 cut(s)	135, 155
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	59, 118
TasI	AATT	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseI	GCWGC	4 cut(s)	134, 137, 154, 157
TspDTI	ATGAA	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	275
XceI	RCATGY	2 cut(s)	49, 149
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.