Rorug06G0493000

BONZAI 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
61048381 .. 61049781
1401 bp
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UTR
Exon/CDS
Intron
Rorug06G0493000.1

Sequence Viewer

Length: 411 bp
ATGGGCAAGAAGAGTAAATCTAAGACTCCTAAAGAGGTTAAAGAAGATAGTGTTGTAGAAAAGACTGTTGTGGAAGAAGAGAAACCTACATCTTCTGCAAAAAAGACTACTACTGCAAAGAAGCCTGCCTCTGTGATTGATGAGATATTCGCCGGGAAAAAGAGGAAGAAAGCTGAAGCCGGAAAGGCTAAAAAGAAAAATGAAGAGGCGACTGAAAAACCCAACAAGCCTAAGAGAAAGAAGAAGAAAGATTTAGGCTTTGAAGACGGTGCATTTGTGGAGCCAAATTCTGGGTCAAAAAAGAGAACAAACGATGGCCTTGCTATCTATACAGAAGAAGAGTTGGGTATCAACAAAGCAGATGCTGGAAGCACCCCTCTTTGTCCATTTGATTGCTCTTGTTGCTTCTGA

Protein Analysis

136

Amino Acids

14.84

Weight (kDa)

9.39

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1764 PF08576 38 - 136 5.3e-27 Eukaryotic protein of unknown function (DUF1764)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 290
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 286
ArsI GACNNNNNNTTYG 4 cut(s) 257, 278, 289, 310
AsuC2I CCSGG 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 270
BccI CCATC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BcnI CCSGG 1 cut(s) 154
BglI GCCNNNNNGGC 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 290
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 2 cut(s) 153, 180
BslI CCNNNNNNNGG 1 cut(s) 290
BsnI GGCC 1 cut(s) 318
BspANI GGCC 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 67, 269
Bst6I CTCTTC 4 cut(s) 5, 72, 198, 333
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 21, 231
BstMWI GCNNNNNNNGC 2 cut(s) 185, 402
BstSCI CCNGG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 365
CviJI RGCY 8 cut(s) 124, 173, 179, 188, 229, 258, 283, 318
CviKI_1 RGCY 8 cut(s) 124, 173, 179, 188, 229, 258, 283, 318
DdeI CTNAG 2 cut(s) 21, 231
Eam1104I CTCTTC 4 cut(s) 5, 72, 198, 333
EarI CTCTTC 4 cut(s) 5, 72, 198, 333
Eco57I CTGAAG 1 cut(s) 195
FaiI YATR 1 cut(s) 330
HaeIII GGCC 1 cut(s) 318
HapII CCGG 2 cut(s) 153, 180
HinfI GANTC 1 cut(s) 25
HpaII CCGG 2 cut(s) 153, 180
Hpy188I TCNGA 1 cut(s) 410
HpyCH4III ACNGT 2 cut(s) 67, 269
HpyCH4V TGCA 3 cut(s) 98, 116, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 402
HpyF3I CTNAG 2 cut(s) 21, 231
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 138, 166, 193, 276, 351
LweI GCATC 1 cut(s) 352
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 5 cut(s) 28, 139, 156, 199, 387
MseI TTAA 1 cut(s) 39
MspI CCGG 2 cut(s) 153, 180
MspR9I CCNGG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 185, 402
NciI CCSGG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 282
PflMI CCANNNNNTGG 1 cut(s) 290
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 365
SaqAI TTAA 1 cut(s) 39
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 154
SetI ASST 3 cut(s) 39, 88, 175
SfaNI GCATC 1 cut(s) 352
SgeI CNNG 9 cut(s) 19, 137, 165, 166, 192, 238, 303, 332, 378
Sse9I AATT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 2 cut(s) 67, 269
TasI AATT 1 cut(s) 286
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 290
XapI RAATTY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.