Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Reverse (-)

7437540 .. 7438025

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG097800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAACTGTGGAGGAAATGAGGACTTGGAATATCGAGCATCGGCTGTAGGTGACGTGAATGCAAATTATGTTACCGCTTTGCCCCCTATGAGTCGTTGGTATGGTCAGATTTCTGCTCCTGCCGATATCATAAGTAGAGATGGCGCAAAGGAACAAATGGTGTGCAACAACCAGATGAATTCGGAAGATTTTTCTGGTTATATTTTTATGTGTAATGGACGAACAAAACCAGAATGCTATATGTACCGAGTTTTCGGACTTCCTGCTGGAAGAAGGGAAGTTATTGAGAAGATTAAGCCAGGGATGAAGCTATTTCTGTTTGACTATGAGGTGAAGTATCTTTATGGGGTATACGAAGCAACCACTGCTGGAAAATTGAACTGGGACACAGCTGCTTTTGGTGGGAACTTCCCTGCACAGGTGAGCTTAGATTTCTTATCATGTCGTTACCTCCCAGTGCAGAAGGGCATCTGTTTAAGATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

161

Amino Acids

18.07

Weight (kDa)

6.29

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	66 - 146	3.9e-31	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	379
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	310, 392, 426
AluI	AGCT	3 cut(s)	310, 392, 426
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	62, 343, 433
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	300
BmgBI	CACGTC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	2 cut(s)	391, 449
BmsI	GCATC	2 cut(s)	47, 477
BmuI	ACTGGG	2 cut(s)	391, 449
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	2 cut(s)	386, 455
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseNI	ACTGG	2 cut(s)	386, 455
BseXI	GCAGC	1 cut(s)	379
BsgI	GTGCAG	2 cut(s)	399, 479
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	2 cut(s)	64, 239
Bsp143I	GATC	1 cut(s)	479
BspACI	CCGC	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	386, 455
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	1 cut(s)	479
BssNAI	GTATAC	1 cut(s)	352
Bst1107I	GTATAC	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstDEI	CTNAG	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	479
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	379
BstZ17I	GTATAC	1 cut(s)	352
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	363, 462
CfoI	GCGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	441
CviJI	RGCY	5 cut(s)	44, 298, 310, 392, 426
CviKI_1	RGCY	5 cut(s)	44, 298, 310, 392, 426
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	1 cut(s)	481
DpnII	GATC	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	127
FaeI	CATG	1 cut(s)	444
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	1 cut(s)	440
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	1 cut(s)	393
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	393
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	444
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	3 cut(s)	62, 343, 433
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	3 cut(s)	108, 184, 257
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	267, 457
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	62, 165, 416, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	427
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	444
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	479
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	47, 477
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	3 cut(s)	50, 70, 446
MalI	GATC	1 cut(s)	481
MboI	GATC	1 cut(s)	479
MboII	GAAGA	3 cut(s)	197, 282, 301
MluCI	AATT	3 cut(s)	64, 178, 374
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	4 cut(s)	5, 13, 322, 461
MseI	TTAA	2 cut(s)	294, 476
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	64, 239
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	1 cut(s)	479
NlaIII	CATG	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	50
PctI	GAATGC	2 cut(s)	64, 239
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	294, 476
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	8 cut(s)	52, 57, 312, 333, 394, 423, 428, 453
SfaNI	GCATC	2 cut(s)	47, 477
SfcI	CTRYAG	1 cut(s)	45
Sse9I	AATT	3 cut(s)	64, 178, 374
SsiI	CCGC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	34
TasI	AATT	3 cut(s)	64, 178, 374
Tru1I	TTAA	2 cut(s)	294, 476
Tru9I	TTAA	2 cut(s)	294, 476
TscAI	CASTG	2 cut(s)	370, 462
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	17, 191, 320
TspRI	CASTG	2 cut(s)	370, 462
XapI	RAATTY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.