Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Forward (+)

59478253 .. 59482152

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAACTGTGGAGGCAATGAGGACTTGGCATATCGAGCATCGGCTGTAGGTGGCTTGAATGCAAATTATGTTACCCCTTTGCCCCCTACGAGTCGTTGGTATGGTCCGATTTCTGCTCCTGCCGATATCATAAGTAGAGATGGCGCAAAGGAACAAATGGTGTGCAACCACCAGATGAATTCGGAGGATTTTTCTGGTTATATTTTTATGTGTAATGGACGAACAAAACCAGAATGCTATATGTACCGAGTTTTCGGACTTCCTGCTGGAAGAAGGGAAGTGATTGAGAAGATTAAGCCAGGGATGAAGCTATTTCTATTTGACTATGATGTGAAGTATCTTTATGGGGTATATGAAGCAACCACTGCTGGAAAATTGAACTGGGACACAGCTGCTTTTGGTGGGAACTTCCCTGCACAGGTGAGATTCCATATCTACAAGGAATGTCTCCCTCTGCCAGAGAGTTGTTTTAAACATGCTATTCGAGATAACTACCAGACAGGCTCCAAAAAATTTAATCCAATTCTCAGTAGCCAACAAGTAAGTCATCTATTATCAATGTTCAATCCTCTTACAAAGCCGTCATCTGCTAGATATAACCATTACCCTGTAAAGAATCAATTTCAATCCCATTCAAGGCTTCCTCCTCCAAGCTATCCATACTTTAACTTGATAAACACCAGTCATGCTCCACAAGCGTCACTGCCTCCAAGCTATTCTTCCATGTATGGCAGACTTACTTCACCAGCCTTGGAGCCTCAGTATACTCAAACGAGTGTCCCGCAGCCAGAACATGTTGGTTATGGATATGCACCACAGATGGGCTACATTAATCCTGCAGTGCAACCGCAAGCCAATTCAACTCCATATCAGACATCTTACACTGTAGAAGCTGGGCAGCCGTACTTGCATGAAGTACCCAAATCATATGAAAGGTATGAGGCTGCTGCACAGGCTATGGTTCCTACTCATCAATACACTTACTGGAGATATGAGTACAATCAGTTACTGTCACAGACCCATATGCAGATGCAGGAGAATGCTGCTCAACACCAGAGTCTCTATCAAGTGCCTGCAGCCCATCATGTTACACAGCCTATACAACAACACGCATCGAGATTCGAAGAGCCTGGGCCTGCTGTGAGGACTCTTCCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

386

Amino Acids

43.7

Weight (kDa)

8.35

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	66 - 188	5.6e-48	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	764
AciI	CCGC	2 cut(s)	782, 848
AcsI	RAATTY	2 cut(s)	178, 512
AfaI	GTAC	4 cut(s)	245, 905, 918, 998
AfiI	CCNNNNNNNGG	3 cut(s)	418, 636, 821
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	6 cut(s)	58, 379, 565, 626, 636, 861
AjnI	CCWGG	2 cut(s)	298, 1129
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
AluBI	AGCT	5 cut(s)	310, 392, 654, 714, 893
AluI	AGCT	5 cut(s)	310, 392, 654, 714, 893
Alw26I	GTCTC	2 cut(s)	452, 1064
AlwNI	CAGNNNCTG	1 cut(s)	1009
AoxI	GGCC	1 cut(s)	1133
ApeKI	GCWGC	7 cut(s)	392, 784, 898, 944, 947, 1043, 1076
ApoI	RAATTY	2 cut(s)	178, 512
AseI	ATTAAT	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	104, 1133
AsuHPI	GGTGA	2 cut(s)	433, 735
AsuII	TTCGAA	1 cut(s)	1122
AvaII	GGWCC	1 cut(s)	104
BbvI	GCAGC	7 cut(s)	379, 796, 910, 931, 934, 1030, 1088
BccI	CCATC	3 cut(s)	134, 814, 1089
BceAI	ACGGC	2 cut(s)	565, 886
BciT130I	CCWGG	2 cut(s)	300, 1131
BcoDI	GTCTC	2 cut(s)	452, 1064
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	4 cut(s)	45, 837, 885, 1074
BisI	GCNGC	7 cut(s)	393, 785, 899, 945, 948, 1044, 1077
BlsI	GCNGC	7 cut(s)	394, 786, 900, 946, 949, 1045, 1078
Bme1390I	CCNGG	2 cut(s)	300, 1131
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	104, 1133
BmiI	GGNNCC	3 cut(s)	505, 756, 963
BmrFI	CCNGG	2 cut(s)	300, 1131
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	3 cut(s)	47, 1020, 1121
BmuI	ACTGGG	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	1006
Bpu14I	TTCGAA	1 cut(s)	1122
BsaJI	CCNNGG	3 cut(s)	299, 750, 1130
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 636, 821
Bse1I	ACTGG	3 cut(s)	386, 681, 989
Bse3DI	GCAATG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	300, 1131
BseDI	CCNNGG	3 cut(s)	299, 750, 1130
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	418, 636, 821
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	541, 773
BseNI	ACTGG	3 cut(s)	386, 681, 989
BseRI	GAGGAG	1 cut(s)	636
BseXI	GCAGC	7 cut(s)	379, 796, 910, 931, 934, 1030, 1088
BseYI	CCCAGC	1 cut(s)	893
BsgI	GTGCAG	2 cut(s)	399, 933
BshFI	GGCC	1 cut(s)	1135
BslFI	GGGAC	2 cut(s)	398, 764
BslI	CCNNNNNNNGG	3 cut(s)	418, 636, 821
BsmAI	GTCTC	2 cut(s)	452, 1064
BsmFI	GGGAC	2 cut(s)	398, 764
BsmI	GAATGC	3 cut(s)	64, 239, 1045
BsnI	GGCC	1 cut(s)	1135
Bsp119I	TTCGAA	1 cut(s)	1122
BspACI	CCGC	2 cut(s)	782, 848
BspANI	GGCC	1 cut(s)	1135
BspCNI	CTCAG	2 cut(s)	540, 772
BspLI	GGNNCC	3 cut(s)	505, 756, 963
BspMAI	CTGCAG	2 cut(s)	841, 1078
BspQI	GCTCTTC	1 cut(s)	1119
BspT104I	TTCGAA	1 cut(s)	1122
BsrDI	GCAATG	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	386, 681, 989
BssECI	CCNNGG	3 cut(s)	299, 750, 1130
BssNAI	GTATAC	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	750
Bst1107I	GTATAC	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	300, 1131
Bst4CI	ACNGT	3 cut(s)	8, 886, 1011
Bst6I	CTCTTC	2 cut(s)	1119, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBI	TTCGAA	1 cut(s)	1122
BstC8I	GCNNGC	3 cut(s)	852, 1074, 1137
BstDEI	CTNAG	2 cut(s)	527, 759
BstF5I	GGATG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	146
BstMAI	GTCTC	2 cut(s)	452, 1064
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 365, 695, 907, 953
BstNI	CCWGG	2 cut(s)	300, 1131
BstNSI	RCATGY	2 cut(s)	479, 797
BstSCI	CCNGG	2 cut(s)	298, 1129
BstSFI	CTRYAG	4 cut(s)	45, 837, 885, 1074
BstV1I	GCAGC	7 cut(s)	379, 796, 910, 931, 934, 1030, 1088
BstZ17I	GTATAC	1 cut(s)	765
BsuRI	GGCC	1 cut(s)	1135
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	3 cut(s)	363, 701, 846
BtsIMutI	CAGTG	4 cut(s)	363, 701, 846, 882
Cac8I	GCNNGC	3 cut(s)	852, 1074, 1137
CaiI	CAGNNNCTG	1 cut(s)	1009
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	104, 1133
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	4 cut(s)	244, 904, 917, 997
CviAII	CATG	6 cut(s)	476, 686, 724, 794, 911, 1085
CviQI	GTAC	4 cut(s)	244, 904, 917, 997
DdeI	CTNAG	2 cut(s)	527, 759
DraI	TTTAAA	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	1119, 1155
EarI	CTCTTC	2 cut(s)	1119, 1155
Eco130I	CCWWGG	1 cut(s)	750
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	298, 1129
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	6 cut(s)	479, 689, 727, 797, 914, 1088
FalI	AAGNNNNNCTT	2 cut(s)	703, 735
FaqI	GGGAC	2 cut(s)	398, 764
FatI	CATG	6 cut(s)	475, 685, 723, 793, 910, 1084
FauI	CCCGC	1 cut(s)	789
FauNDI	CATATG	2 cut(s)	928, 1023
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	7 cut(s)	393, 785, 899, 945, 948, 1044, 1077
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	7 cut(s)	393, 785, 899, 945, 948, 1044, 1077
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	7 cut(s)	393, 785, 899, 945, 948, 1044, 1077
GsaI	CCCAGC	1 cut(s)	897
GsuI	CTGGAG	1 cut(s)	1006
HaeIII	GGCC	1 cut(s)	1135
HgaI	GACGC	1 cut(s)	687
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	6 cut(s)	479, 689, 727, 797, 914, 1088
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	6 cut(s)	91, 426, 616, 1057, 1119, 1147
HphI	GGTGA	2 cut(s)	433, 735
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188I	TCNGA	4 cut(s)	108, 184, 257, 873
Hpy188III	TCNNGA	2 cut(s)	485, 1116
Hpy8I	GTNNAC	1 cut(s)	765
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	3 cut(s)	8, 886, 1011
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 365, 695, 907, 953
HpyF3I	CTNAG	2 cut(s)	527, 759
Hsp92II	CATG	6 cut(s)	479, 689, 727, 797, 914, 1088
HspAI	GCGC	1 cut(s)	144
LguI	GCTCTTC	1 cut(s)	1119
LmnI	GCTCC	4 cut(s)	121, 509, 694, 754
Lsp1109I	GCAGC	7 cut(s)	379, 796, 910, 931, 934, 1030, 1088
LweI	GCATC	3 cut(s)	47, 1020, 1121
MaeI	CTAG	1 cut(s)	591
MaeIII	GTNAC	5 cut(s)	70, 699, 1005, 1011, 1087
MboII	GAAGA	5 cut(s)	282, 301, 711, 1136, 1142
MluCI	AATT	7 cut(s)	64, 178, 374, 512, 522, 620, 856
MlyI	GAGTC	3 cut(s)	100, 1066, 1141
MseI	TTAA	5 cut(s)	294, 471, 516, 666, 831
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	300, 1131
Mva1269I	GAATGC	3 cut(s)	64, 239, 1045
MvaI	CCWGG	2 cut(s)	300, 1131
MwoI	GCNNNNNNNGC	5 cut(s)	35, 365, 695, 907, 953
NdeI	CATATG	2 cut(s)	928, 1023
NlaIII	CATG	6 cut(s)	479, 689, 727, 797, 914, 1088
NlaIV	GGNNCC	3 cut(s)	505, 756, 963
NmuCI	GTSAC	2 cut(s)	699, 1011
NspI	RCATGY	2 cut(s)	479, 797
NspV	TTCGAA	1 cut(s)	1122
PciI	ACATGT	1 cut(s)	793
PciSI	GCTCTTC	1 cut(s)	1119
PctI	GAATGC	3 cut(s)	64, 239, 1045
PfeI	GAWTC	3 cut(s)	426, 616, 1119
PkrI	GCNGC	7 cut(s)	394, 786, 900, 946, 949, 1045, 1078
PleI	GAGTC	3 cut(s)	99, 1065, 1141
PpsI	GAGTC	3 cut(s)	99, 1065, 1141
PscI	ACATGT	1 cut(s)	793
PshBI	ATTAAT	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	298, 1129
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	2 cut(s)	298, 1129
PspN4I	GGNNCC	3 cut(s)	505, 756, 963
PspPI	GGNCC	2 cut(s)	104, 1133
PstI	CTGCAG	2 cut(s)	841, 1078
PstNI	CAGNNNCTG	1 cut(s)	1009
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	4 cut(s)	245, 905, 918, 998
RsaNI	GTAC	4 cut(s)	244, 904, 917, 997
SapI	GCTCTTC	1 cut(s)	1119
SaqAI	TTAA	5 cut(s)	294, 471, 516, 666, 831
SatI	GCNGC	7 cut(s)	393, 785, 899, 945, 948, 1044, 1077
Sau96I	GGNCC	2 cut(s)	104, 1133
SchI	GAGTC	3 cut(s)	100, 1066, 1141
ScrFI	CCNGG	2 cut(s)	300, 1131
SetI	ASST	8 cut(s)	52, 312, 394, 423, 656, 716, 895, 938
SfaNI	GCATC	3 cut(s)	47, 1020, 1121
SfcI	CTRYAG	4 cut(s)	45, 837, 885, 1074
SfuI	TTCGAA	1 cut(s)	1122
SinI	GGWCC	1 cut(s)	104
Sse9I	AATT	7 cut(s)	64, 178, 374, 512, 522, 620, 856
SsiI	CCGC	2 cut(s)	782, 848
SspMI	CTAG	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	298, 1129
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	3 cut(s)	8, 886, 1011
TaqI	TCGA	4 cut(s)	34, 484, 1115, 1122
TasI	AATT	7 cut(s)	64, 178, 374, 512, 522, 620, 856
TatI	WGTACW	1 cut(s)	996
TfiI	GAWTC	3 cut(s)	426, 616, 1119
Tru1I	TTAA	5 cut(s)	294, 471, 516, 666, 831
Tru9I	TTAA	5 cut(s)	294, 471, 516, 666, 831
TscAI	CASTG	4 cut(s)	370, 708, 846, 889
TseFI	GTSAC	2 cut(s)	699, 1011
TseI	GCWGC	7 cut(s)	392, 784, 898, 944, 947, 1043, 1076
Tsp45I	GTSAC	2 cut(s)	699, 1011
TspDTI	ATGAA	6 cut(s)	17, 191, 320, 369, 927, 945
TspRI	CASTG	4 cut(s)	370, 708, 846, 889
VpaK11BI	GGWCC	1 cut(s)	104
VspI	ATTAAT	1 cut(s)	831
XapI	RAATTY	2 cut(s)	178, 512
XceI	RCATGY	2 cut(s)	479, 797
XmiI	GTMKAC	1 cut(s)	764
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.