Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Reverse (-)

61041315 .. 61043278

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0492800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGGGGGAGGGATCGGGTGCGATGAGGTACACGCTGAGGCCGGAGAGGGTGAGCAACGAGGACATACTGTTCTGCGTGGATGTTGACCCGGAGTGTATGTCGGAGATGAAAACCGGGCCAAATGGGCGGCCCTTTACCCGATTGGACTCCATCAAGCAAGCCATCCTTCTCTTCATCAACGCCAAGCTCACCATCAACCCGGAACACCGATTCGCCTTCTCCGTTCTCGCAAAGTCCGTGTCTTGGATTCGGAAAGAGTTCAGCAGTGATGTCGAGTCTGCTAAGGCTGCTTTTCGAGCGCTGTATCCTACTTCATCATCTGGGCATGCAGATCTTACCACTCTATTTCGAATAGCAGCTCATGAAGCAAAGAAATCTCGGGCTCAGAAAAGAATATTGAGGGTGATTCTTATCTACTGCAGATCATCACTACAACCACAACATCAATGGCCTGTTAATCAGAAAATCTTCACTATGGATGTGGTTTACCTTCATGACAAGCCTGGACCCGACAACTGCCCCCAGCTGGTGTATGATAAACTTGTGGAAGCCCTTGAACATGTTACTGAATTTGAGGGCTACATCTTGGAGAGTGGTCAGGGGTTATCACGAACCCTCTTCCGTCACATGTGTTTGCTGCTGTCACACCCTCAGCAGCGTTGCTCACAAGATTACCTGGACATACCCAAGTCTCTCGCAAAAAGGTTGCCAGCAGACTCAGCACCCGGTGACGATAGTATACCTGTATCCAGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

253

Amino Acids

28.55

Weight (kDa)

7.66

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	742
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	572
AdeI	CACNNNGTG	1 cut(s)	731
AfaI	GTAC	1 cut(s)	32
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	246, 529
AflIII	ACRYGT	2 cut(s)	562, 630
AgsI	TTSAA	1 cut(s)	560
AjnI	CCWGG	2 cut(s)	505, 678
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	3 cut(s)	190, 362, 529
AluI	AGCT	3 cut(s)	190, 362, 529
Alw26I	GTCTC	1 cut(s)	699
AlwI	GGATC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	381
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	4 cut(s)	41, 119, 131, 452
ApeKI	GCWGC	4 cut(s)	290, 359, 640, 658
ApoI	RAATTY	1 cut(s)	572
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	2 cut(s)	260, 470
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	3 cut(s)	119, 132, 509
AsuC2I	CCSGG	4 cut(s)	92, 118, 203, 729
AsuHPI	GGTGA	4 cut(s)	64, 184, 418, 743
AsuII	TTCGAA	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	388
BbvCI	CCTCAGC	2 cut(s)	38, 654
BbvI	GCAGC	4 cut(s)	277, 371, 627, 670
BccI	CCATC	3 cut(s)	161, 173, 203
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	2 cut(s)	507, 680
BciVI	GTATCC	2 cut(s)	318, 760
BcnI	CCSGG	4 cut(s)	92, 118, 203, 729
BcoDI	GTCTC	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	421
BfoI	RGCGCY	1 cut(s)	305
BfuI	GTATCC	2 cut(s)	318, 760
BglI	GCCNNNNNGGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	5 cut(s)	131, 291, 360, 641, 659
BlsI	GCNGC	5 cut(s)	132, 292, 361, 642, 660
Bme1390I	CCNGG	6 cut(s)	92, 118, 203, 507, 680, 729
Bme18I	GGWCC	1 cut(s)	509
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	3 cut(s)	119, 132, 509
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	6 cut(s)	92, 118, 203, 507, 680, 729
Bpu10I	CCTNAGC	3 cut(s)	38, 285, 654
Bpu14I	TTCGAA	1 cut(s)	352
BpuMI	CCSGG	4 cut(s)	92, 118, 203, 729
BsaBI	GATNNNNATC	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 529
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	507, 680
BseGI	GGATG	3 cut(s)	88, 165, 487
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	246, 529
BseMII	CTCAG	4 cut(s)	29, 401, 668, 735
BseXI	GCAGC	4 cut(s)	277, 371, 627, 670
BseYI	CCCAGC	1 cut(s)	525
BshFI	GGCC	4 cut(s)	43, 121, 133, 454
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	5 cut(s)	44, 92, 117, 203, 729
BslI	CCNNNNNNNGG	2 cut(s)	246, 529
BsmAI	GTCTC	1 cut(s)	699
BsnI	GGCC	4 cut(s)	43, 121, 133, 454
BsoBI	CYCGRG	1 cut(s)	381
Bsp119I	TTCGAA	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	14, 334, 425
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	4 cut(s)	43, 121, 133, 454
BspCNI	CTCAG	4 cut(s)	30, 400, 667, 734
BspHI	TCATGA	2 cut(s)	364, 496
BspLI	GGNNCC	1 cut(s)	511
BspMAI	CTGCAG	1 cut(s)	425
BspPI	GGATC	1 cut(s)	22
BspT104I	TTCGAA	1 cut(s)	352
BssMI	GATC	3 cut(s)	14, 334, 425
BssNAI	GTATAC	1 cut(s)	743
Bst1107I	GTATAC	1 cut(s)	743
Bst2UI	CCWGG	2 cut(s)	507, 680
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	179, 626
BstBI	TTCGAA	1 cut(s)	352
BstC8I	GCNNGC	3 cut(s)	162, 330, 714
BstDEI	CTNAG	5 cut(s)	38, 285, 387, 654, 721
BstF5I	GGATG	3 cut(s)	88, 165, 487
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	3 cut(s)	17, 337, 428
BstMAI	GTCTC	1 cut(s)	699
BstMBI	GATC	3 cut(s)	14, 334, 425
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 290, 299, 368, 722
BstNI	CCWGG	2 cut(s)	507, 680
BstNSI	RCATGY	3 cut(s)	332, 566, 634
BstSCI	CCNGG	6 cut(s)	90, 116, 201, 505, 678, 727
BstSFI	CTRYAG	1 cut(s)	421
BstV1I	GCAGC	4 cut(s)	277, 371, 627, 670
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BstZ17I	GTATAC	1 cut(s)	743
BsuI	GTATCC	2 cut(s)	318, 760
BsuRI	GGCC	4 cut(s)	43, 121, 133, 454
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	88, 165, 487
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	162, 330, 714
CciI	TCATGA	2 cut(s)	364, 496
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	3 cut(s)	119, 132, 509
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	5 cut(s)	329, 365, 497, 563, 631
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	5 cut(s)	38, 285, 387, 654, 721
DpnI	GATC	3 cut(s)	16, 336, 427
DpnII	GATC	3 cut(s)	14, 334, 425
DraIII	CACNNNGTG	1 cut(s)	731
Eam1104I	CTCTTC	2 cut(s)	179, 626
EarI	CTCTTC	2 cut(s)	179, 626
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	509
Eco47III	AGCGCT	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	505, 678
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	5 cut(s)	332, 368, 500, 566, 634
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	5 cut(s)	328, 364, 496, 562, 630
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	5 cut(s)	131, 291, 360, 641, 659
FokI	GGATG	3 cut(s)	95, 152, 494
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	5 cut(s)	131, 291, 360, 641, 659
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	5 cut(s)	131, 291, 360, 641, 659
GsaI	CCCAGC	1 cut(s)	529
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	4 cut(s)	43, 121, 133, 454
HapII	CCGG	5 cut(s)	44, 92, 117, 203, 729
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	5 cut(s)	332, 368, 500, 566, 634
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	6 cut(s)	149, 213, 250, 278, 409, 719
HpaII	CCGG	5 cut(s)	44, 92, 117, 203, 729
HphI	GGTGA	4 cut(s)	64, 184, 418, 743
Hpy166II	GTNNAC	4 cut(s)	33, 88, 490, 743
Hpy188I	TCNGA	4 cut(s)	106, 255, 390, 465
Hpy188III	TCNNGA	3 cut(s)	365, 497, 612
Hpy8I	GTNNAC	4 cut(s)	33, 88, 490, 743
HpyAV	CCTTC	3 cut(s)	179, 229, 503
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	332, 423
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 290, 299, 368, 722
HpyF3I	CTNAG	5 cut(s)	38, 285, 387, 654, 721
Hsp92II	CATG	5 cut(s)	332, 368, 500, 566, 634
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	3 cut(s)	14, 334, 425
Lsp1109I	GCAGC	4 cut(s)	277, 371, 627, 670
MaeIII	GTNAC	4 cut(s)	565, 626, 645, 731
MalI	GATC	3 cut(s)	16, 336, 427
MboI	GATC	3 cut(s)	14, 334, 425
MboII	GAAGA	3 cut(s)	166, 463, 613
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	1 cut(s)	572
MlyI	GAGTC	3 cut(s)	143, 287, 713
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	9 cut(s)	4, 21, 33, 42, 55, 396, 571, 629, 663
MroXI	GAANNNNTTC	2 cut(s)	260, 470
MseI	TTAA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	5 cut(s)	44, 92, 117, 203, 729
MspR9I	CCNGG	6 cut(s)	92, 118, 203, 507, 680, 729
MvaI	CCWGG	2 cut(s)	507, 680
MwoI	GCNNNNNNNGC	5 cut(s)	127, 290, 299, 368, 722
NciI	CCSGG	4 cut(s)	92, 118, 203, 729
NdeII	GATC	3 cut(s)	14, 334, 425
NlaIII	CATG	5 cut(s)	332, 368, 500, 566, 634
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	3 cut(s)	626, 645, 731
NspI	RCATGY	3 cut(s)	332, 566, 634
NspV	TTCGAA	1 cut(s)	352
PaeI	GCATGC	1 cut(s)	332
PagI	TCATGA	2 cut(s)	364, 496
PciI	ACATGT	2 cut(s)	562, 630
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 237
PdmI	GAANNNNTTC	2 cut(s)	260, 470
PfeI	GAWTC	3 cut(s)	213, 250, 409
PkrI	GCNGC	5 cut(s)	132, 292, 361, 642, 660
PleI	GAGTC	3 cut(s)	143, 286, 713
PpsI	GAGTC	3 cut(s)	143, 286, 713
PscI	ACATGT	2 cut(s)	562, 630
Psp6I	CCWGG	2 cut(s)	505, 678
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	2 cut(s)	505, 678
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	3 cut(s)	119, 132, 509
PstI	CTGCAG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	5 cut(s)	131, 291, 360, 641, 659
Sau3AI	GATC	3 cut(s)	14, 334, 425
Sau96I	GGNCC	3 cut(s)	119, 132, 509
SchI	GAGTC	3 cut(s)	143, 287, 713
ScrFI	CCNGG	6 cut(s)	92, 118, 203, 507, 680, 729
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	8 cut(s)	32, 192, 364, 495, 531, 681, 710, 748
SfcI	CTRYAG	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	352
SinI	GGWCC	1 cut(s)	509
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	1 cut(s)	572
SsiI	CCGC	1 cut(s)	130
SspI	AATATT	1 cut(s)	399
StyD4I	CCNGG	6 cut(s)	90, 116, 201, 505, 678, 727
TaaI	ACNGT	1 cut(s)	72
TaqI	TCGA	3 cut(s)	276, 298, 352
TasI	AATT	1 cut(s)	572
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	3 cut(s)	213, 250, 409
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	3 cut(s)	626, 645, 731
TseI	GCWGC	4 cut(s)	290, 359, 640, 658
Tsp45I	GTSAC	3 cut(s)	626, 645, 731
TspDTI	ATGAA	5 cut(s)	125, 166, 306, 381, 485
TspGWI	ACGGA	3 cut(s)	214, 229, 614
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	1 cut(s)	572
XceI	RCATGY	3 cut(s)	332, 566, 634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	447
XmiI	GTMKAC	1 cut(s)	742
XmnI	GAANNNNTTC	2 cut(s)	260, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.