Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015419.1

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2515

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015419.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggttagtgattttagagtttatgttggaggagaaggttttctccaatatactagagataagaagagatatttatctttattgtgcagtcgtcttcaacctccaccacttttcgacctcgatttccggcctatatccatgggaaaaagacgaggcaagcgtctaagcaaaagaggcctaactagagatcatgatggtaggattaggaggatagacaagagttttacaaaggaaaagaagaaatctaagaagataaccgaatcttccttgcctcagactgcagctgagcttagtagtagtactagtgccaattctgcttccaataaagcaacttcttctagtcatgctaatcaagctactagagaaaggcttcgatcaaaaaacaaagggaaggatagtgggcaatcacattctggttttatctttatgtgtaatggaaagactaaacccgaatgttatcagtatcgcgtttttgggctaccaatggcaaaagtagaagttgtgaaggcaatcaaacagggtacacatctatttttatatgactttgacttgaagctcctttatggcacatacagcgcaacttcggatggagcattagatttggagccaattgcgttcaagggaaaatttcctgcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

213

Amino Acids

23.98

Weight (kDa)

10.06

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	626
AfaI	GTAC	2 cut(s)	301, 523
AgsI	TTSAA	3 cut(s)	98, 553, 619
AhlI	ACTAGT	1 cut(s)	302
AluBI	AGCT	4 cut(s)	284, 289, 356, 556
AluI	AGCT	4 cut(s)	284, 289, 356, 556
AoxI	GGCC	2 cut(s)	128, 175
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	626
Asp700I	GAANNNNTTC	2 cut(s)	39, 369
AspLEI	GCGC	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	188, 581
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	5 cut(s)	54, 183, 303, 339, 360
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	1 cut(s)	282
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	276, 287
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	293
BsgI	GTGCAG	2 cut(s)	106, 618
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	2 cut(s)	130, 177
BsiSI	CCGG	1 cut(s)	127
BsnI	GGCC	2 cut(s)	130, 177
Bsp143I	GATC	2 cut(s)	187, 374
Bsp1720I	GCTNAGC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	138
BspANI	GGCC	2 cut(s)	130, 177
BspCNI	CTCAG	2 cut(s)	277, 286
BspFNI	CGCG	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	606
BspMAI	CTGCAG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	187, 374
BssT1I	CCWWGG	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	5 cut(s)	164, 246, 273, 285, 290
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	2 cut(s)	190, 377
BstMBI	GATC	2 cut(s)	187, 374
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 314, 353, 573
BstSFI	CTRYAG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	130, 177
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	592
Cac8I	GCNNGC	1 cut(s)	158
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	578
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	300, 522
CviAII	CATG	3 cut(s)	139, 191, 344
CviJI	RGCY	9 cut(s)	130, 177, 284, 289, 356, 370, 478, 556, 607
CviKI_1	RGCY	9 cut(s)	130, 177, 284, 289, 356, 370, 478, 556, 607
CviQI	GTAC	2 cut(s)	300, 522
DdeI	CTNAG	5 cut(s)	164, 246, 273, 285, 290
DpnI	GATC	2 cut(s)	189, 376
DpnII	GATC	2 cut(s)	187, 374
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	142, 194, 347
FatI	CATG	3 cut(s)	138, 190, 343
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	5 cut(s)	54, 183, 303, 339, 360
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	130, 177
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	578
Hin1II	CATG	3 cut(s)	142, 194, 347
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	2 cut(s)	276, 586
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	3 cut(s)	29, 385, 499
HpyCH4V	TGCA	3 cut(s)	87, 281, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 314, 353, 573
HpyF3I	CTNAG	5 cut(s)	164, 246, 273, 285, 290
Hsp92II	CATG	3 cut(s)	142, 194, 347
HspAI	GCGC	1 cut(s)	576
Kzo9I	GATC	2 cut(s)	187, 374
LmnI	GCTCC	3 cut(s)	561, 590, 604
LpnPI	CCDG	3 cut(s)	140, 399, 503
Lsp1109I	GCAGC	1 cut(s)	293
MaeI	CTAG	5 cut(s)	54, 183, 303, 339, 360
MalI	GATC	2 cut(s)	189, 376
MboI	GATC	2 cut(s)	187, 374
MboII	GAAGA	6 cut(s)	76, 86, 250, 255, 262, 327
MfeI	CAATTG	1 cut(s)	609
MluCI	AATT	3 cut(s)	310, 609, 626
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	7 cut(s)	23, 111, 128, 146, 167, 201, 282
MroXI	GAANNNNTTC	2 cut(s)	39, 369
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	4 cut(s)	174, 314, 353, 573
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	2 cut(s)	187, 374
NlaIII	CATG	3 cut(s)	142, 194, 347
NlaIV	GGNNCC	1 cut(s)	606
PagI	TCATGA	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	39, 369
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	2 cut(s)	301, 523
RsaNI	GTAC	2 cut(s)	300, 522
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	2 cut(s)	187, 374
ScaI	AGTACT	1 cut(s)	301
SetI	ASST	7 cut(s)	40, 103, 120, 286, 291, 358, 558
SfcI	CTRYAG	1 cut(s)	279
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	3 cut(s)	310, 609, 626
SseBI	AGGCCT	1 cut(s)	177
SspMI	CTAG	5 cut(s)	54, 183, 303, 339, 360
StuI	AGGCCT	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	3 cut(s)	114, 120, 373
TasI	AATT	3 cut(s)	310, 609, 626
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	626
XmnI	GAANNNNTTC	2 cut(s)	39, 369
XspI	CTAG	5 cut(s)	54, 183, 303, 339, 360
ZrmI	AGTACT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.