Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000847

Physical Location & Seq

Genomic Coordinates Forward (+)

5503781 .. 5507612

Gene Structure 3832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09490.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAACTGTGGAAGAAATGAGGAGTTGGAATACCAAGGTTGGGCTGTAGGCGACTTGGATGGCAGCTATGCTGCCCCTGTGTCGCCTATGAGTCGTCGGTATGGCCAGATTTCTGCTCATGGTGATAGTGTGAGTCGAGATGGGGCAAAGGAACAAGTGAGGTGGAAGGGCGATACGAATTCCGAGGATTTTTATGGTTACATATTTATGTGTAATGGGAGAACCAAGCCGGAATGCTACATGTACCGTGTTTTTGGACTTCCTGCTGGAAGAAGGGAATTTATTGAGAAGATTAGGCCAGGCATGAAGCTGTTTCTATTTGACTATGATGTGAAGTATCTTTATGGAGTATATGAAGCAACCACTGGTGGAAGATTGAACTGGGAGACGACTGCTTTTGGTGGGAAATTCCCTGCACAGGTGAGATTCCATATCTACAAGGAATGTCTCCCTCTGCCAGAGAGTTGTTTCAAGCATGCTATTCGAGATAACTACCAGATAGGCTCCAAAAAATTTAATCCAGTTCTCAGTAGGCAACAGGTAAGTCATCTATTATCATTATTCAATCCTCTTACAAAGCCGTCATCTGCTATCTATGACCAATACCCTGCAAAAGATCAATTTCAATCCCATTCAAGGCTTCCTCCTCAAAGCTATCCATACGTTAACTTGATAAACTCCAGTCATGCTCCACAAGTGTCACTACCTCCAAGCTATTCTTCAATGTATGACAGAATTACTTCACCAGCCTTGGAGCCTCAGTATACTCAAATGAATGTCCTGCAGCCAGAACATGATGGTTATAGATATGCAGCAAAGATTGGCGCCTACAACAATACTGCAGTGCAACCACAATATAATTCAGCTCCATATCAGACATCTTATTCATTAGAAGCTGGGCACCCGTACTTGCCTGAAGTACCCAAATCCTATGAAAGGTATGAGGCTGCTGCACAGGCTACGGTCTCTACTCATCAATACAGTGACTGGACGTATGAGTACAATCAGCTACCATCACAGACCCAGATGCAGATGCAGGAATATGCTGCTCAACACCAGAGTCTCTATCAAGTGCCTGAAGCCCATCATGTTGCACGGCCTATACAACAACATGGATTGACATTCGAAGAGCCTGGACTTGATGTGAGGACTCTTCCCATTTCATCATCAAATACCTGGACTCTGCAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

398

Amino Acids

45.44

Weight (kDa)

6.5

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	66 - 188	1e-47	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61910 AT5G61910 AT5G61910 AT5G61910 AT5G61910
fragaria_vesca	FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_4g22660 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490 FvH4_5g09490
malus_domestica	MD00G1177300.v1.1 MD06G1130800.v1.1 MD08G1165400.v1.1 MD13G1130600.v1.1 MD14G1147400.v1.1
prunus_persica	Prupe.1G215000_v2.0.a1 Prupe.1G215000_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1 Prupe.5G141900_v2.0.a1
pyrus_communis	pycom06g12240 pycom13g11380 pycom14g12210 pycom16g11120
rosa_chinensis	RchiOBHm_Chr4g0428901 RchiOBHm_Chr7g0188711
rosa_laevigata	RLG00000007116
rosa_multiflora	Rmu_co8242699.1_g000001 Rmu_sc0001576.1_g000030 Rmu_sc0003854.1_g000003 Rmu_sc0008612.1_g000009 Rmu_sc0015419.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266110 Rroxscaffold_5G00370570
rosa_rugosa	Rorug04G0230100 Rorug04G0230200 Rorug04G0230300 Rorug06G0492700 Rorug06G0492700 Rorug06G0492700 Rorug06G0492800 Rorug06G0492900 Rorug06G0493000
rosa_samantha	Rh4AG286800 Rh4BG292600 Rh4CG308600 Rh4DG289800 Rh7AG097400 Rh7AG097800 Rh7BG099200 Rh7CG101000 Rh7DG099600
rosa_wichuraiana	Rw4G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	824, 900
AccI	GTMKAC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	4 cut(s)	178, 278, 407, 512
AcuI	CTGAAG	2 cut(s)	936, 1098
AcyI	GRCGYC	1 cut(s)	825
AfaI	GTAC	4 cut(s)	245, 908, 921, 1001
AfiI	CCNNNNNNNGG	4 cut(s)	40, 418, 636, 936
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	6 cut(s)	379, 472, 565, 626, 636, 723
AjnI	CCWGG	3 cut(s)	298, 1132, 1175
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
AluBI	AGCT	7 cut(s)	66, 310, 654, 714, 866, 896, 1009
AluI	AGCT	7 cut(s)	66, 310, 654, 714, 866, 896, 1009
Alw26I	GTCTC	4 cut(s)	380, 452, 970, 1067
AlwNI	CAGNNNCTG	1 cut(s)	987
AoxI	GGCC	3 cut(s)	103, 296, 1097
ApeKI	GCWGC	7 cut(s)	63, 71, 784, 812, 947, 950, 1046
ApoI	RAATTY	4 cut(s)	178, 278, 407, 512
Asp700I	GAANNNNTTC	1 cut(s)	739
AspLEI	GCGC	1 cut(s)	827
AsuHPI	GGTGA	3 cut(s)	134, 433, 735
AsuII	TTCGAA	1 cut(s)	1125
BaeGI	GKGCMC	1 cut(s)	903
BalI	TGGCCA	1 cut(s)	105
BanI	GGYRCC	2 cut(s)	824, 900
BbvI	GCAGC	7 cut(s)	58, 75, 796, 824, 934, 937, 1033
BccI	CCATC	5 cut(s)	53, 134, 791, 1021, 1092
BceAI	ACGGC	2 cut(s)	565, 1112
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	3 cut(s)	300, 1134, 1177
BcoDI	GTCTC	4 cut(s)	380, 452, 970, 1067
BfmI	CTRYAG	3 cut(s)	45, 782, 840
BfoI	RGCGCY	1 cut(s)	828
BisI	GCNGC	7 cut(s)	64, 72, 785, 813, 948, 951, 1047
BlsI	GCNGC	7 cut(s)	65, 73, 786, 814, 949, 952, 1048
Bme1390I	CCNGG	3 cut(s)	300, 1134, 1177
BmiI	GGNNCC	4 cut(s)	505, 756, 826, 902
BmrFI	CCNGG	3 cut(s)	300, 1134, 1177
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	1017, 1023
BmuI	ACTGGG	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	664
Bpu14I	TTCGAA	1 cut(s)	1125
BsaHI	GRCGYC	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	970
BsaJI	CCNNGG	3 cut(s)	34, 183, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 418, 636, 936
Bse1I	ACTGG	5 cut(s)	370, 386, 521, 681, 992
BseBI	CCWGG	3 cut(s)	300, 1134, 1177
BseDI	CCNNGG	3 cut(s)	34, 183, 750
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	4 cut(s)	40, 418, 636, 936
BseMII	CTCAG	2 cut(s)	541, 773
BseNI	ACTGG	5 cut(s)	370, 386, 521, 681, 992
BseRI	GAGGAG	2 cut(s)	35, 636
BseSI	GKGCMC	1 cut(s)	903
BseXI	GCAGC	7 cut(s)	58, 75, 796, 824, 934, 937, 1033
BseYI	CCCAGC	1 cut(s)	896
BsgI	GTGCAG	2 cut(s)	399, 936
BshFI	GGCC	3 cut(s)	105, 298, 1099
BshNI	GGYRCC	2 cut(s)	824, 900
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	4 cut(s)	40, 418, 636, 936
BsmAI	GTCTC	4 cut(s)	380, 452, 970, 1067
BsmBI	CGTCTC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	3 cut(s)	105, 298, 1099
Bso31I	GGTCTC	1 cut(s)	970
Bsp119I	TTCGAA	1 cut(s)	1125
Bsp1286I	GDGCHC	1 cut(s)	903
Bsp143I	GATC	1 cut(s)	616
BspANI	GGCC	3 cut(s)	105, 298, 1099
BspCNI	CTCAG	2 cut(s)	540, 772
BspLI	GGNNCC	4 cut(s)	505, 756, 826, 902
BspMAI	CTGCAG	2 cut(s)	786, 844
BspQI	GCTCTTC	1 cut(s)	1122
BspT104I	TTCGAA	1 cut(s)	1125
BspT107I	GGYRCC	2 cut(s)	824, 900
BspTNI	GGTCTC	1 cut(s)	970
BsrI	ACTGG	5 cut(s)	370, 386, 521, 681, 992
BssECI	CCNNGG	3 cut(s)	34, 183, 750
BssMI	GATC	1 cut(s)	616
BssNAI	GTATAC	1 cut(s)	765
BssNI	GRCGYC	1 cut(s)	825
BssT1I	CCWWGG	2 cut(s)	34, 750
Bst1107I	GTATAC	1 cut(s)	765
Bst2UI	CCWGG	3 cut(s)	300, 1134, 1177
Bst4CI	ACNGT	4 cut(s)	8, 248, 964, 983
Bst6I	CTCTTC	2 cut(s)	1122, 1158
BstACI	GRCGYC	1 cut(s)	825
BstBI	TTCGAA	1 cut(s)	1125
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	527, 759
BstENI	CCTNNNNNAGG	1 cut(s)	934
BstF5I	GGATG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	828
BstHHI	GCGC	1 cut(s)	827
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	4 cut(s)	380, 452, 970, 1067
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	1 cut(s)	956
BstNI	CCWGG	3 cut(s)	300, 1134, 1177
BstNSI	RCATGY	2 cut(s)	244, 479
BstSCI	CCNGG	3 cut(s)	298, 1132, 1175
BstSFI	CTRYAG	3 cut(s)	45, 782, 840
BstSLI	GKGCMC	1 cut(s)	903
BstV1I	GCAGC	7 cut(s)	58, 75, 796, 824, 934, 937, 1033
BstZ17I	GTATAC	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	105, 298, 1099
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	363, 849, 988
Cac8I	GCNNGC	1 cut(s)	477
CaiI	CAGNNNCTG	1 cut(s)	987
CfoI	GCGC	1 cut(s)	827
Csp6I	GTAC	4 cut(s)	244, 907, 920, 1000
CspCI	CAANNNNNGTGG	2 cut(s)	143, 178
CviAII	CATG	8 cut(s)	119, 241, 304, 476, 686, 794, 1088, 1112
CviQI	GTAC	4 cut(s)	244, 907, 920, 1000
DdeI	CTNAG	2 cut(s)	527, 759
DinI	GGCGCC	1 cut(s)	826
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	1122, 1158
EarI	CTCTTC	2 cut(s)	1122, 1158
Eco130I	CCWWGG	2 cut(s)	34, 750
Eco31I	GGTCTC	1 cut(s)	970
Eco57I	CTGAAG	2 cut(s)	936, 1098
EcoNI	CCTNNNNNAGG	1 cut(s)	934
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	298, 1132, 1175
EcoT14I	CCWWGG	2 cut(s)	34, 750
EgeI	GGCGCC	1 cut(s)	826
EheI	GGCGCC	1 cut(s)	826
ErhI	CCWWGG	2 cut(s)	34, 750
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	8 cut(s)	122, 244, 307, 479, 689, 797, 1091, 1115
FalI	AAGNNNNNCTT	2 cut(s)	703, 735
FatI	CATG	8 cut(s)	118, 240, 303, 475, 685, 793, 1087, 1111
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	7 cut(s)	64, 72, 785, 813, 948, 951, 1047
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	7 cut(s)	64, 72, 785, 813, 948, 951, 1047
GlaI	GCGC	1 cut(s)	826
GluI	GCNGC	7 cut(s)	64, 72, 785, 813, 948, 951, 1047
GsaI	CCCAGC	1 cut(s)	900
GsuI	CTGGAG	1 cut(s)	664
HaeII	RGCGCY	1 cut(s)	828
HaeIII	GGCC	3 cut(s)	105, 298, 1099
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	827
Hin1I	GRCGYC	1 cut(s)	825
Hin1II	CATG	8 cut(s)	122, 244, 307, 479, 689, 797, 1091, 1115
Hin6I	GCGC	1 cut(s)	825
HinP1I	GCGC	1 cut(s)	825
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	6 cut(s)	91, 133, 426, 1060, 1150, 1180
HpaI	GTTAAC	1 cut(s)	667
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	3 cut(s)	134, 433, 735
Hpy166II	GTNNAC	2 cut(s)	667, 765
Hpy188I	TCNGA	2 cut(s)	184, 876
Hpy188III	TCNNGA	2 cut(s)	137, 485
Hpy8I	GTNNAC	2 cut(s)	667, 765
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	160, 267
HpyCH4III	ACNGT	4 cut(s)	8, 248, 964, 983
HpyCH4IV	ACGT	2 cut(s)	663, 992
HpyF10VI	GCNNNNNNNGC	1 cut(s)	956
HpyF3I	CTNAG	2 cut(s)	527, 759
HpySE526I	ACGT	2 cut(s)	663, 992
Hsp92I	GRCGYC	1 cut(s)	825
Hsp92II	CATG	8 cut(s)	122, 244, 307, 479, 689, 797, 1091, 1115
HspAI	GCGC	1 cut(s)	825
KasI	GGCGCC	1 cut(s)	824
KspAI	GTTAAC	1 cut(s)	667
Kzo9I	GATC	1 cut(s)	616
LguI	GCTCTTC	1 cut(s)	1122
LmnI	GCTCC	4 cut(s)	509, 694, 754, 871
Lsp1109I	GCAGC	7 cut(s)	58, 75, 796, 824, 934, 937, 1033
LweI	GCATC	2 cut(s)	1017, 1023
MaeII	ACGT	2 cut(s)	663, 992
MaeIII	GTNAC	3 cut(s)	197, 699, 983
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	7 cut(s)	24, 282, 301, 384, 711, 1139, 1145
MhlI	GDGCHC	1 cut(s)	903
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	8 cut(s)	178, 278, 407, 512, 620, 735, 859, 1189
MluNI	TGGCCA	1 cut(s)	105
Mly113I	GGCGCC	1 cut(s)	825
MlyI	GAGTC	5 cut(s)	100, 142, 1069, 1144, 1174
MmeI	TCCRAC	1 cut(s)	6
Mox20I	TGGCCA	1 cut(s)	105
MroXI	GAANNNNTTC	1 cut(s)	739
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	3 cut(s)	516, 666, 1192
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	3 cut(s)	300, 1134, 1177
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	3 cut(s)	300, 1134, 1177
MwoI	GCNNNNNNNGC	1 cut(s)	956
NarI	GGCGCC	1 cut(s)	825
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	8 cut(s)	122, 244, 307, 479, 689, 797, 1091, 1115
NlaIV	GGNNCC	4 cut(s)	505, 756, 826, 902
NmuCI	GTSAC	2 cut(s)	699, 983
NspI	RCATGY	2 cut(s)	244, 479
NspV	TTCGAA	1 cut(s)	1125
PaeI	GCATGC	1 cut(s)	479
PciI	ACATGT	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	1122
PctI	GAATGC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	739
PfeI	GAWTC	1 cut(s)	426
PkrI	GCNGC	7 cut(s)	65, 73, 786, 814, 949, 952, 1048
PleI	GAGTC	5 cut(s)	99, 141, 1068, 1144, 1174
PluTI	GGCGCC	1 cut(s)	828
PpsI	GAGTC	5 cut(s)	99, 141, 1068, 1144, 1174
PscI	ACATGT	1 cut(s)	240
Psp6I	CCWGG	3 cut(s)	298, 1132, 1175
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	3 cut(s)	298, 1132, 1175
PspN4I	GGNNCC	4 cut(s)	505, 756, 826, 902
PstI	CTGCAG	2 cut(s)	786, 844
PstNI	CAGNNNCTG	1 cut(s)	987
RsaI	GTAC	4 cut(s)	245, 908, 921, 1001
RsaNI	GTAC	4 cut(s)	244, 907, 920, 1000
RseI	CAYNNNNRTG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	1122
SaqAI	TTAA	3 cut(s)	516, 666, 1192
SatI	GCNGC	7 cut(s)	64, 72, 785, 813, 948, 951, 1047
Sau3AI	GATC	1 cut(s)	616
SchI	GAGTC	5 cut(s)	100, 142, 1069, 1144, 1174
ScrFI	CCNGG	3 cut(s)	300, 1134, 1177
SduI	GDGCHC	1 cut(s)	903
SfaNI	GCATC	2 cut(s)	1017, 1023
SfcI	CTRYAG	3 cut(s)	45, 782, 840
SfoI	GGCGCC	1 cut(s)	826
SfuI	TTCGAA	1 cut(s)	1125
SmiMI	CAYNNNNRTG	1 cut(s)	206
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	8 cut(s)	178, 278, 407, 512, 620, 735, 859, 1189
SspDI	GGCGCC	1 cut(s)	824
StyD4I	CCNGG	3 cut(s)	298, 1132, 1175
StyI	CCWWGG	2 cut(s)	34, 750
TaaI	ACNGT	4 cut(s)	8, 248, 964, 983
TaiI	ACGT	2 cut(s)	666, 995
TaqI	TCGA	3 cut(s)	136, 484, 1125
TasI	AATT	8 cut(s)	178, 278, 407, 512, 620, 735, 859, 1189
TatI	WGTACW	1 cut(s)	999
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	3 cut(s)	516, 666, 1192
Tru9I	TTAA	3 cut(s)	516, 666, 1192
TscAI	CASTG	3 cut(s)	370, 849, 988
TseFI	GTSAC	2 cut(s)	699, 983
TseI	GCWGC	7 cut(s)	63, 71, 784, 812, 947, 950, 1046
Tsp45I	GTSAC	2 cut(s)	699, 983
TspDTI	ATGAA	7 cut(s)	17, 320, 369, 788, 876, 948, 1152
TspRI	CASTG	3 cut(s)	370, 849, 988
XagI	CCTNNNNNAGG	1 cut(s)	934
XapI	RAATTY	4 cut(s)	178, 278, 407, 512
XceI	RCATGY	2 cut(s)	244, 479
XmiI	GTMKAC	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.