AT5G63660

Belongs to the DEFL family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
25485486 .. 25486324
839 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63660.1

Sequence Viewer

Length: 222 bp
ATGGAGAACAAGTTTTTCGCTGCATTCTTCTTGCTTCTTGTCCTCTTCTCATCTCAGGAGATCATTGGGGGTGAAGGAAGGACATGCCAATCAAAGAGCCACCACTTCAAATACATGTGTACGTCCAACCACAACTGTGCCATAGTTTGCCGTAACGAGGGATTTTCCGGTGGTCGCTGCCATGGCTTCCATCGCCGTTGCTACTGCACCCGCCTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

8.39

Weight (kDa)

8.92

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 27 - 73 6.4e-19 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 157
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 1 cut(s) 109
AleI CACNNNNGTG 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 20, 177
AsuHPI GGTGA 1 cut(s) 83
BbvI GCAGC 2 cut(s) 7, 164
BccI CCATC 1 cut(s) 198
BceAI ACGGC 2 cut(s) 135, 180
BisI GCNGC 2 cut(s) 21, 178
BlsI GCNGC 2 cut(s) 22, 179
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 7, 164
BsgI GTGCAG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 157
BsmI GAATGC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 60
Bsp19I CCATGG 1 cut(s) 181
BspACI CCGC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 181
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 183, 192
BstNSI RCATGY 2 cut(s) 87, 118
BstV1I GCAGC 2 cut(s) 7, 164
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 176
Csp6I GTAC 1 cut(s) 120
CviAII CATG 3 cut(s) 84, 115, 182
CviJI RGCY 2 cut(s) 99, 186
CviKI_1 RGCY 2 cut(s) 99, 186
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 3 cut(s) 87, 118, 185
FaiI YATR 4 cut(s) 85, 116, 143, 183
FatI CATG 3 cut(s) 83, 114, 181
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 2 cut(s) 21, 178
Fsp4HI GCNGC 2 cut(s) 21, 178
GluI GCNGC 2 cut(s) 21, 178
HapII CCGG 1 cut(s) 168
Hin1II CATG 3 cut(s) 87, 118, 185
HpaII CCGG 1 cut(s) 168
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 120
HpyAV CCTTC 2 cut(s) 68, 72
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 23, 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 192
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 3 cut(s) 87, 118, 185
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 2 cut(s) 41, 181
Lsp1109I GCAGC 2 cut(s) 7, 164
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 2 cut(s) 19, 37
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 2 cut(s) 53, 151
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 183, 192
NcoI CCATGG 1 cut(s) 181
NdeII GATC 1 cut(s) 60
NlaIII CATG 3 cut(s) 87, 118, 185
NspI RCATGY 2 cut(s) 87, 118
OliI CACNNNNGTG 1 cut(s) 135
PciI ACATGT 1 cut(s) 114
PctI GAATGC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 22, 179
PscI ACATGT 1 cut(s) 114
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 135
SatI GCNGC 2 cut(s) 21, 178
Sau3AI GATC 1 cut(s) 60
SetI ASST 1 cut(s) 125
SgeI CNNG 9 cut(s) 22, 43, 50, 68, 96, 127, 169, 180, 194
SmiMI CAYNNNNRTG 1 cut(s) 135
SsiI CCGC 1 cut(s) 211
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 125
TseI GCWGC 2 cut(s) 20, 177
XceI RCATGY 2 cut(s) 87, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.