Rh5DG170700

Knottins

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
18314726 .. 18327689
12964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG170700.1

Sequence Viewer

Length: 228 bp
ATGGACAGGAAGTTCTTAGGGCGTGTTCTGTTCTTCATCGTCCTCCTGACGTCTCAAGAGATGGTGATTCGCAGCGAAGCGAAGATATGCGAAGTCCCGAGCAAAACATTCAAGGGGTTGTGCGTCAAGGACAGGAACTGTGTCGTGAGATGTCACAGTGAGGGTTACGGTAACGGCAAATGCTCCCATGTCCGACGACAGTGCATGTGCTTGAAGATTTGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.62

Weight (kDa)

9.2

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 28 - 74 8.7e-15 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 50
AgsI TTSAA 2 cut(s) 112, 214
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 97
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BcoDI GTCTC 1 cut(s) 57
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 50
BseXI GCAGC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 50
Bst4CI ACNGT 4 cut(s) 140, 158, 170, 201
BstACI GRCGYC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 163, 206
CaiI CAGNNNCTG 1 cut(s) 138
CseI GACGC 1 cut(s) 112
CviAII CATG 2 cut(s) 188, 205
DdeI CTNAG 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 2 cut(s) 191, 208
FaiI YATR 3 cut(s) 88, 189, 206
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 187, 204
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 73
HgaI GACGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 191, 208
HinfI GANTC 1 cut(s) 67
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 4 cut(s) 46, 56, 97, 145
Hpy99I CGWCG 1 cut(s) 198
HpyCH4III ACNGT 4 cut(s) 140, 158, 170, 201
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 191, 208
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 2 cut(s) 59, 118
Lsp1109I GCAGC 1 cut(s) 84
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 4 cut(s) 152, 164, 170, 221
MboII GAAGA 3 cut(s) 25, 94, 226
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 2 cut(s) 53, 154
NlaIII CATG 2 cut(s) 191, 208
NmuCI GTSAC 2 cut(s) 152, 221
NspI RCATGY 1 cut(s) 208
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 138
SatI GCNGC 1 cut(s) 73
SetI ASST 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
TaaI ACNGT 4 cut(s) 140, 158, 170, 201
TaiI ACGT 1 cut(s) 53
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 2 cut(s) 163, 206
TseFI GTSAC 2 cut(s) 152, 221
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 2 cut(s) 152, 221
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 2 cut(s) 163, 206
XceI RCATGY 1 cut(s) 208
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.