Rw7G034560

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001621
Physical Location & Seq
Reverse (-)
51324763 .. 51325084
322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034560.1

Sequence Viewer

Length: 225 bp
ATGGGGAGGAAGTGTCTGGGTCTTCTCTTTGTGCTCTTCATTGTCTTGGCTTCACAAGACGTGGTGGTGCCAAGTGAGGCTAGGGTTTGCGAGTCAAGGAGTCATGGATTCCATGGGACATGTATTCACCACAACAACTGTGCTCTCGTCTGCCGTAACGTAGGCTTCCCCAGTGGTAGATGCCATGGATTCCATCGCCGCTGCTTTTGCACTCGAAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

74

Amino Acids

8.26

Weight (kDa)

9.08

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 28 - 74 4.5e-17 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AciI CCGC 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 119
AjiI CACGTC 1 cut(s) 61
Alw21I GWGCWC 2 cut(s) 36, 145
ApeKI GCWGC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 36, 145
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 138
BfaI CTAG 1 cut(s) 81
BisI GCNGC 2 cut(s) 199, 202
BlsI GCNGC 2 cut(s) 200, 203
BmgBI CACGTC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 69
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 112, 184
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 112, 184
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 36, 145
BslFI GGGAC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 130
Bsp1286I GDGCHC 2 cut(s) 36, 145
Bsp19I CCATGG 2 cut(s) 112, 184
BspACI CCGC 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 69
BspQI GCTCTTC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 112, 184
BssT1I CCWWGG 2 cut(s) 112, 184
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 41
BstDSI CCRYGG 2 cut(s) 112, 184
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 14
BtgI CCRYGG 2 cut(s) 112, 184
BtgZI GCGATG 1 cut(s) 179
BtrI CACGTC 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 178
CviAII CATG 4 cut(s) 104, 113, 120, 185
CviJI RGCY 3 cut(s) 50, 80, 165
CviKI_1 RGCY 3 cut(s) 50, 80, 165
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 112, 184
EcoT14I CCWWGG 2 cut(s) 112, 184
ErhI CCWWGG 2 cut(s) 112, 184
FaeI CATG 4 cut(s) 107, 116, 123, 188
FaiI YATR 4 cut(s) 105, 114, 121, 186
FaqI GGGAC 1 cut(s) 130
FatI CATG 4 cut(s) 103, 112, 119, 184
Fnu4HI GCNGC 2 cut(s) 199, 202
Fsp4HI GCNGC 2 cut(s) 199, 202
FspBI CTAG 1 cut(s) 81
GluI GCNGC 2 cut(s) 199, 202
Hin1II CATG 4 cut(s) 107, 116, 123, 188
HinfI GANTC 4 cut(s) 92, 100, 108, 189
HphI GGTGA 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 60, 159
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpySE526I ACGT 2 cut(s) 60, 159
Hsp92II CATG 4 cut(s) 107, 116, 123, 188
LguI GCTCTTC 1 cut(s) 41
LpnPI CCDG 2 cut(s) 2, 184
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 60, 159
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 2 cut(s) 14, 28
MhlI GDGCHC 2 cut(s) 36, 145
MluCI AATT 1 cut(s) 217
MlyI GAGTC 2 cut(s) 101, 109
MnlI CCTC 1 cut(s) 70
MspA1I CMGCKG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 207
NcoI CCATGG 2 cut(s) 112, 184
NlaIII CATG 4 cut(s) 107, 116, 123, 188
NlaIV GGNNCC 1 cut(s) 69
NspI RCATGY 1 cut(s) 123
PciI ACATGT 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 108, 189
PkrI GCNGC 2 cut(s) 200, 203
PleI GAGTC 2 cut(s) 100, 108
PpsI GAGTC 2 cut(s) 100, 108
PscI ACATGT 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 41
SatI GCNGC 2 cut(s) 199, 202
SchI GAGTC 2 cut(s) 101, 109
SduI GDGCHC 2 cut(s) 36, 145
SetI ASST 2 cut(s) 63, 162
SfaNI GCATC 1 cut(s) 170
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 199
SspMI CTAG 1 cut(s) 81
StyI CCWWGG 2 cut(s) 112, 184
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 63, 162
TaqI TCGA 1 cut(s) 214
TasI AATT 1 cut(s) 217
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 2 cut(s) 108, 189
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 1 cut(s) 28
TspRI CASTG 1 cut(s) 178
XceI RCATGY 1 cut(s) 123
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.