Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001621

Physical Location & Seq

Genomic Coordinates Reverse (-)

36691937 .. 36692268

Gene Structure 332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1234800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGATCATCCTTATAACTTCTCGAGAGATGGTGATGCACAGTGAAGCAAAGATTTGTTCAGAGCCAAGTAAAACATTCAAAGGGATATGCATCATACAGAGGAACTGCATGGTGAGACGCCACAGCGAGGGGTATGGTTACGGCAAATGCTCACATGTCCTACGCCGGTGCATGTTCTATAAACCTTGTGACCTGGATCAAACTACTCATGAAATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

74

Amino Acids

8.5

Weight (kDa)

8.85

Isoelectric Point (pI)

65.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	17 - 63	1.6e-10	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63660
fragaria_vesca	FvH4_3g14460 FvH4_3g14470 FvH4_3g14470 FvH4_3g14600 FvH4_3g14600 FvH4_3g14600 FvH4_3g14620 FvH4_3g14630 FvH4_5g33001
malus_domestica	MD00G1135500.v1.1 MD05G1234500.v1.1 MD05G1234800.v1.1
prunus_persica	Prupe.1G201200_v2.0.a1 Prupe.4G131400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0024061 RchiOBHm_Chr5g0024081 RchiOBHm_Chr5g0024091 RchiOBHm_Chr7g0227171 RchiOBHm_Chr7g0231101
rosa_laevigata	RLG00000032732 RLG00000032759
rosa_multiflora	Rmu_sc0004593.1_g000016 Rmu_sc0020340.1_g000001 Rmu_sc0020587.1_g000002 Rmu_sc0035288.1_g000001 Rmu_ssc0000027.1_g000017
rosa_roxburghii	Rroxscaffold_1G00055150 Rroxscaffold_1G00055160 Rroxscaffold_1G00055170 Rroxscaffold_1G00055460 Rroxscaffold_3G00229570
rosa_rugosa	Rorug05G0079300 Rorug07G0264600
rosa_samantha	Rh5AG171800 Rh5AG171900 Rh5AG172100 Rh5BG166500 Rh5BG168500 Rh5BG168600 Rh5CG184000 Rh5CG184300 Rh5DG170600 Rh5DG170700 Rh7DG388400
rosa_wichuraiana	Rw0G003220 Rw0G010770 Rw5G015290 Rw7G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	43, 124
AvaI	CYCGRG	1 cut(s)	21
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	24, 99
BsaBI	GATNNNNATC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	6
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	3, 196
BspHI	TCATGA	2 cut(s)	208, 218
BspPI	GGATC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssMI	GATC	2 cut(s)	3, 196
BssNI	GRCGYC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	6
BstKTI	GATC	2 cut(s)	6, 199
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	3, 196
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	2 cut(s)	158, 175
BstSCI	CCNGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	46
CciI	TCATGA	2 cut(s)	208, 218
Cfr10I	RCCGGY	1 cut(s)	165
CseI	GACGC	1 cut(s)	126
CviAII	CATG	5 cut(s)	109, 155, 172, 209, 219
CviJI	RGCY	1 cut(s)	64
CviKI_1	RGCY	1 cut(s)	64
DpnI	GATC	2 cut(s)	5, 198
DpnII	GATC	2 cut(s)	3, 196
Eco88I	CYCGRG	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	5 cut(s)	112, 158, 175, 212, 222
FatI	CATG	5 cut(s)	108, 154, 171, 208, 218
FbaI	TGATCA	1 cut(s)	3
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	5 cut(s)	112, 158, 175, 212, 222
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	2 cut(s)	43, 124
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	21, 23, 209, 219
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	37, 90, 108, 171
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	5 cut(s)	112, 158, 175, 212, 222
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 196
LpnPI	CCDG	3 cut(s)	179, 179, 206
LweI	GCATC	2 cut(s)	24, 99
MaeIII	GTNAC	2 cut(s)	137, 188
MalI	GATC	2 cut(s)	5, 198
MboI	GATC	2 cut(s)	3, 196
MluCI	AATT	1 cut(s)	213
MnlI	CCTC	2 cut(s)	93, 121
Mph1103I	ATGCAT	1 cut(s)	92
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	3, 196
NlaIII	CATG	5 cut(s)	112, 158, 175, 212, 222
NmuCI	GTSAC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	92
NspI	RCATGY	2 cut(s)	158, 175
PaeR7I	CTCGAG	1 cut(s)	21
PagI	TCATGA	2 cut(s)	208, 218
PciI	ACATGT	1 cut(s)	154
PscI	ACATGT	1 cut(s)	154
PsiI	TTATAA	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	3, 196
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	2 cut(s)	187, 195
SfaNI	GCATC	2 cut(s)	24, 99
Sfr274I	CTCGAG	1 cut(s)	21
SgrAI	CRCCGGYG	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	213
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	2 cut(s)	158, 175
XhoI	CTCGAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.