RchiOBHm_Chr7g0231101

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001621
Physical Location & Seq
Reverse (-)
54711589 .. 54712057
469 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20708

Sequence Viewer

Length: 228 bp
ATGGTCATGGGGAGGAAGTGTCTGGGTCTTCTCTTTGTGCTCTTCATTGTCTTGGCTTCACACGTGGTGGTGCCAAGTGAGGCTAGGGTTTGCGAGTCAAGGAGTCATGGATTCCATGGGACATGTATTCACCACAACAACTGTGCTCTCGTCTGCCGTAACGAAGGCTTCCCCGGTGGTAGATGCCGTGGATTCCGTCGCCGCTGCTTTTGCACTCGAAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

75

Amino Acids

8.42

Weight (kDa)

9.48

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 29 - 75 8.5e-18 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AciI CCGC 1 cut(s) 202
AcvI CACGTG 1 cut(s) 64
AdeI CACNNNGTG 1 cut(s) 67
AflIII ACRYGT 2 cut(s) 61, 122
Alw21I GWGCWC 2 cut(s) 42, 148
ApeKI GCWGC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 122
BanI GGYRCC 1 cut(s) 70
BbrPI CACGTG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 42, 148
BbvI GCAGC 1 cut(s) 191
BceAI ACGGC 2 cut(s) 141, 171
BcnI CCSGG 1 cut(s) 174
BfaI CTAG 1 cut(s) 84
BisI GCNGC 2 cut(s) 202, 205
BlsI GCNGC 2 cut(s) 203, 206
Bme1390I CCNGG 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 64
BsaJI CCNNGG 3 cut(s) 115, 172, 187
BsaXI ACNNNNNCTCC 1 cut(s) 34
BseDI CCNNGG 3 cut(s) 115, 172, 187
BseXI GCAGC 1 cut(s) 191
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 42, 148
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 42, 148
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 115, 172, 187
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 64
BstDSI CCRYGG 2 cut(s) 115, 187
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 20
BtgI CCRYGG 2 cut(s) 115, 187
CviAII CATG 4 cut(s) 7, 107, 116, 123
CviJI RGCY 3 cut(s) 56, 83, 168
CviKI_1 RGCY 3 cut(s) 56, 83, 168
DraIII CACNNNGTG 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 115
Eco72I CACGTG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 4 cut(s) 10, 110, 119, 126
FaiI YATR 4 cut(s) 8, 108, 117, 124
FaqI GGGAC 1 cut(s) 133
FatI CATG 4 cut(s) 6, 106, 115, 122
Fnu4HI GCNGC 2 cut(s) 202, 205
Fsp4HI GCNGC 2 cut(s) 202, 205
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 202, 205
HapII CCGG 1 cut(s) 174
Hin1II CATG 4 cut(s) 10, 110, 119, 126
HinfI GANTC 4 cut(s) 95, 103, 111, 192
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 122
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 4 cut(s) 10, 110, 119, 126
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 2 cut(s) 8, 187
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 158
MboII GAAGA 2 cut(s) 20, 34
MhlI GDGCHC 2 cut(s) 42, 148
MluCI AATT 1 cut(s) 220
MlyI GAGTC 2 cut(s) 104, 112
MnlI CCTC 2 cut(s) 6, 73
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 1 cut(s) 174
NcoI CCATGG 1 cut(s) 115
NlaIII CATG 4 cut(s) 10, 110, 119, 126
NlaIV GGNNCC 1 cut(s) 72
NspI RCATGY 1 cut(s) 126
PciI ACATGT 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 111, 192
PkrI GCNGC 2 cut(s) 203, 206
PleI GAGTC 2 cut(s) 103, 111
PmaCI CACGTG 1 cut(s) 64
PmlI CACGTG 1 cut(s) 64
PpsI GAGTC 2 cut(s) 103, 111
Ppu21I YACGTR 1 cut(s) 64
PscI ACATGT 1 cut(s) 122
PspCI CACGTG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 47
SatI GCNGC 2 cut(s) 202, 205
SchI GAGTC 2 cut(s) 104, 112
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 42, 148
SetI ASST 1 cut(s) 66
SfaNI GCATC 1 cut(s) 173
Sse9I AATT 1 cut(s) 220
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 217
TasI AATT 1 cut(s) 220
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 2 cut(s) 111, 192
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 126
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.