Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001621

Physical Location & Seq

Genomic Coordinates Forward (+)

29451688 .. 29452318

Gene Structure 631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1135500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGAGAGGAAATCATGCTTTGGGTTTCTGTTTTTGCTCTTCATTGTCTTGGCTTCACAAGAGATGGTGGTGCCAACTGAGGCAAGGGTTTGTCAATCACAGAGTCATGGGTTCCATGGAACATGCCTCCGCCACCACAACTGTGCTCTTGTCTGCAGGAACGAGGGTTTCTCCGGTGGTAGGTGCCGTGGCCTTCGTCGCCGCTGTTTTTGCACTCGCCTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

76

Amino Acids

8.57

Weight (kDa)

9.27

Isoelectric Point (pI)

67.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	29 - 75	1.3e-17	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63660
fragaria_vesca	FvH4_3g14460 FvH4_3g14470 FvH4_3g14470 FvH4_3g14600 FvH4_3g14600 FvH4_3g14600 FvH4_3g14620 FvH4_3g14630 FvH4_5g33001
malus_domestica	MD00G1135500.v1.1 MD05G1234500.v1.1 MD05G1234800.v1.1
prunus_persica	Prupe.1G201200_v2.0.a1 Prupe.4G131400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0024061 RchiOBHm_Chr5g0024081 RchiOBHm_Chr5g0024091 RchiOBHm_Chr7g0227171 RchiOBHm_Chr7g0231101
rosa_laevigata	RLG00000032732 RLG00000032759
rosa_multiflora	Rmu_sc0004593.1_g000016 Rmu_sc0020340.1_g000001 Rmu_sc0020587.1_g000002 Rmu_sc0035288.1_g000001 Rmu_ssc0000027.1_g000017
rosa_roxburghii	Rroxscaffold_1G00055150 Rroxscaffold_1G00055160 Rroxscaffold_1G00055170 Rroxscaffold_1G00055460 Rroxscaffold_3G00229570
rosa_rugosa	Rorug05G0079300 Rorug07G0264600
rosa_samantha	Rh5AG171800 Rh5AG171900 Rh5AG172100 Rh5BG166500 Rh5BG168500 Rh5BG168600 Rh5CG184000 Rh5CG184300 Rh5DG170600 Rh5DG170700 Rh7DG388400
rosa_wichuraiana	Rw0G003220 Rw0G010770 Rw5G015290 Rw7G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	70, 183
AciI	CCGC	2 cut(s)	130, 202
AfiI	CCNNNNNNNGG	1 cut(s)	180
AleI	CACNNNNGTG	1 cut(s)	141
Alw21I	GWGCWC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	190
BanI	GGYRCC	2 cut(s)	70, 183
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	154
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
BmiI	GGNNCC	3 cut(s)	72, 113, 185
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BsaJI	CCNNGG	2 cut(s)	115, 187
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	115, 187
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	2 cut(s)	70, 183
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	180
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	2 cut(s)	130, 202
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	72, 113, 185
BspMAI	CTGCAG	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	2 cut(s)	70, 183
BssECI	CCNNGG	2 cut(s)	115, 187
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	2 cut(s)	115, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 210
BstNSI	RCATGY	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	2 cut(s)	115, 187
CviAII	CATG	4 cut(s)	15, 107, 116, 123
CviJI	RGCY	2 cut(s)	53, 192
CviKI_1	RGCY	2 cut(s)	53, 192
DdeI	CTNAG	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	4 cut(s)	18, 110, 119, 126
FaiI	YATR	4 cut(s)	16, 108, 117, 124
FatI	CATG	4 cut(s)	14, 106, 115, 122
Fnu4HI	GCNGC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	4 cut(s)	18, 110, 119, 126
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	174
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	156, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 210
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	18, 110, 119, 126
LguI	GCTCTTC	1 cut(s)	44
LpnPI	CCDG	2 cut(s)	142, 187
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	3 cut(s)	73, 137, 157
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	198, 210
NcoI	CCATGG	1 cut(s)	115
NlaIII	CATG	4 cut(s)	18, 110, 119, 126
NlaIV	GGNNCC	3 cut(s)	72, 113, 185
NspI	RCATGY	1 cut(s)	126
OliI	CACNNNNGTG	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	72, 113, 185
PstI	CTGCAG	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	44
SatI	GCNGC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	141
SsiI	CCGC	2 cut(s)	130, 202
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	143
TauI	GCSGC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	31
XceI	RCATGY	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.