Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001621

Physical Location & Seq

Genomic Coordinates Forward (+)

14087208 .. 14087546

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGGGAGCAAATGTCTGGTTGTTTTCTTTTTGCTCTTCATTGTTTTCGCTTCACAAGAGATGGTAGTGCCAAGTGAGGCTAGGGTTTGCGAGTCACAGAGTCATGGATTCCATGGGACATGCATTCGCGCCCACAACTGTGCTCTCGTCTGCAGGCACGAGGGTTTCTCCGGTGGCAGATGCCGCGGCTTCCGGCGCCGATGCTTTTGCACTCGAAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

74

Amino Acids

8.39

Weight (kDa)

9.27

Isoelectric Point (pI)

63.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	28 - 74	2e-17	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63660
fragaria_vesca	FvH4_3g14460 FvH4_3g14470 FvH4_3g14470 FvH4_3g14600 FvH4_3g14600 FvH4_3g14600 FvH4_3g14620 FvH4_3g14630 FvH4_5g33001
malus_domestica	MD00G1135500.v1.1 MD05G1234500.v1.1 MD05G1234800.v1.1
prunus_persica	Prupe.1G201200_v2.0.a1 Prupe.4G131400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0024061 RchiOBHm_Chr5g0024081 RchiOBHm_Chr5g0024091 RchiOBHm_Chr7g0227171 RchiOBHm_Chr7g0231101
rosa_laevigata	RLG00000032732 RLG00000032759
rosa_multiflora	Rmu_sc0004593.1_g000016 Rmu_sc0020340.1_g000001 Rmu_sc0020587.1_g000002 Rmu_sc0035288.1_g000001 Rmu_ssc0000027.1_g000017
rosa_roxburghii	Rroxscaffold_1G00055150 Rroxscaffold_1G00055160 Rroxscaffold_1G00055170 Rroxscaffold_1G00055460 Rroxscaffold_3G00229570
rosa_rugosa	Rorug05G0079300 Rorug07G0264600
rosa_samantha	Rh5AG171800 Rh5AG171900 Rh5AG172100 Rh5BG166500 Rh5BG168500 Rh5BG168600 Rh5CG184000 Rh5CG184300 Rh5DG170600 Rh5DG170700 Rh7DG388400
rosa_wichuraiana	Rw0G003220 Rw0G010770 Rw5G015290 Rw7G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	195
AccII	CGCG	2 cut(s)	129, 186
AciI	CCGC	2 cut(s)	184, 186
AcyI	GRCGYC	1 cut(s)	196
AleI	CACNNNNGTG	1 cut(s)	138
Alw21I	GWGCWC	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	131, 198
BanI	GGYRCC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	145
BccI	CCATC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	199
BisI	GCNGC	2 cut(s)	184, 187
BlsI	GCNGC	2 cut(s)	185, 188
BmiI	GGNNCC	1 cut(s)	197
BmsI	GCATC	2 cut(s)	170, 191
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaHI	GRCGYC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	112, 184
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	112, 184
Bsh1236I	CGCG	2 cut(s)	129, 186
BshNI	GGYRCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	171, 193
BslFI	GGGAC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	2 cut(s)	184, 186
BspFNI	CGCG	2 cut(s)	129, 186
BspLI	GGNNCC	1 cut(s)	197
BspMAI	CTGCAG	1 cut(s)	155
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	112, 184
BssNI	GRCGYC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	155
BstDSI	CCRYGG	2 cut(s)	112, 184
BstFNI	CGCG	2 cut(s)	129, 186
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	131, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 195
BstNSI	RCATGY	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	2 cut(s)	129, 186
BtgI	CCRYGG	2 cut(s)	112, 184
Cac8I	GCNNGC	1 cut(s)	155
CfoI	GCGC	2 cut(s)	131, 198
Cfr42I	CCGCGG	1 cut(s)	187
CviAII	CATG	3 cut(s)	104, 113, 120
CviJI	RGCY	2 cut(s)	80, 189
CviKI_1	RGCY	2 cut(s)	80, 189
DinI	GGCGCC	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	125
EgeI	GGCGCC	1 cut(s)	197
EheI	GGCGCC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	3 cut(s)	107, 116, 123
FaiI	YATR	3 cut(s)	105, 114, 121
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	3 cut(s)	103, 112, 119
Fnu4HI	GCNGC	2 cut(s)	184, 187
Fsp4HI	GCNGC	2 cut(s)	184, 187
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	2 cut(s)	130, 197
GluI	GCNGC	2 cut(s)	184, 187
HaeII	RGCGCY	1 cut(s)	199
HapII	CCGG	2 cut(s)	171, 193
HhaI	GCGC	2 cut(s)	131, 198
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	3 cut(s)	107, 116, 123
Hin6I	GCGC	2 cut(s)	129, 196
HinP1I	GCGC	2 cut(s)	129, 196
HinfI	GANTC	3 cut(s)	92, 100, 108
HpaII	CCGG	2 cut(s)	171, 193
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	3 cut(s)	123, 153, 210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 195
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	107, 116, 123
HspAI	GCGC	2 cut(s)	129, 196
KasI	GGCGCC	1 cut(s)	195
KspI	CCGCGG	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	6
LpnPI	CCDG	4 cut(s)	2, 139, 184, 206
LweI	GCATC	2 cut(s)	170, 191
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	93
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	145
Mly113I	GGCGCC	1 cut(s)	196
MlyI	GAGTC	2 cut(s)	101, 109
MnlI	CCTC	2 cut(s)	70, 154
Mph1103I	ATGCAT	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	2 cut(s)	171, 193
Mva1269I	GAATGC	1 cut(s)	123
MvnI	CGCG	2 cut(s)	129, 186
MwoI	GCNNNNNNNGC	2 cut(s)	183, 195
NarI	GGCGCC	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	112
NlaIII	CATG	3 cut(s)	107, 116, 123
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	125
NspI	RCATGY	1 cut(s)	123
OliI	CACNNNNGTG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	41
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	185, 188
PleI	GAGTC	2 cut(s)	100, 108
PluTI	GGCGCC	1 cut(s)	199
PpsI	GAGTC	2 cut(s)	100, 108
PspN4I	GGNNCC	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	138
SacII	CCGCGG	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	41
SatI	GCNGC	2 cut(s)	184, 187
SchI	GAGTC	2 cut(s)	101, 109
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	2 cut(s)	170, 191
SfcI	CTRYAG	1 cut(s)	151
SfoI	GGCGCC	1 cut(s)	197
Sfr303I	CCGCGG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	138
SsiI	CCGC	2 cut(s)	184, 186
SspDI	GGCGCC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	214
TauI	GCSGC	2 cut(s)	186, 189
TfiI	GAWTC	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	28
XceI	RCATGY	1 cut(s)	123
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.