Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001621

Physical Location & Seq

Genomic Coordinates Reverse (-)

8930776 .. 8931515

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14470.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGACAGAAAGTTCCTAGGGCTTGTTTTGTTCTTCATCGTCCTTTTGGCTTCTGAAGAGACGGTGATTCGCAGTGAAGCGAAGAGACAACCAAAGCCATGCCTAGTCCCCAGCGGAACATTCAGGGGGATGTGCTTGGATAACAACAAATGTAACGAGACTTGTCTTGAAGAAGATTACTTAGGCGGCAAATGCAACATGGTCACACGAAAATGCATGTGCTTCAAGCCATGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

80

Amino Acids

8.97

Weight (kDa)

8.46

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	34 - 78	9.6e-14	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63660
fragaria_vesca	FvH4_3g14460 FvH4_3g14470 FvH4_3g14470 FvH4_3g14600 FvH4_3g14600 FvH4_3g14600 FvH4_3g14620 FvH4_3g14630 FvH4_5g33001
malus_domestica	MD00G1135500.v1.1 MD05G1234500.v1.1 MD05G1234800.v1.1
prunus_persica	Prupe.1G201200_v2.0.a1 Prupe.4G131400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0024061 RchiOBHm_Chr5g0024081 RchiOBHm_Chr5g0024091 RchiOBHm_Chr7g0227171 RchiOBHm_Chr7g0231101
rosa_laevigata	RLG00000032732 RLG00000032759
rosa_multiflora	Rmu_sc0004593.1_g000016 Rmu_sc0020340.1_g000001 Rmu_sc0020587.1_g000002 Rmu_sc0035288.1_g000001 Rmu_ssc0000027.1_g000017
rosa_roxburghii	Rroxscaffold_1G00055150 Rroxscaffold_1G00055160 Rroxscaffold_1G00055170 Rroxscaffold_1G00055460 Rroxscaffold_3G00229570
rosa_rugosa	Rorug05G0079300 Rorug07G0264600
rosa_samantha	Rh5AG171800 Rh5AG171900 Rh5AG172100 Rh5BG166500 Rh5BG168500 Rh5BG168600 Rh5CG184000 Rh5CG184300 Rh5DG170600 Rh5DG170700 Rh7DG388400
rosa_wichuraiana	Rw0G003220 Rw0G010770 Rw5G015290 Rw7G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	114, 186
AcuI	CTGAAG	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	170, 226
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw26I	GTCTC	3 cut(s)	53, 79, 152
AspA2I	CCTAGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	76
AvrII	CCTAGG	1 cut(s)	16
BcoDI	GTCTC	3 cut(s)	53, 79, 152
BfaI	CTAG	2 cut(s)	17, 104
BisI	GCNGC	1 cut(s)	187
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	92
BsmAI	GTCTC	3 cut(s)	53, 79, 152
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	92
BspACI	CCGC	2 cut(s)	114, 186
BssECI	CCNNGG	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	2 cut(s)	51, 77
BstDEI	CTNAG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	135
BstMAI	GTCTC	3 cut(s)	53, 79, 152
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
CviAII	CATG	4 cut(s)	99, 199, 217, 231
CviJI	RGCY	4 cut(s)	22, 50, 97, 229
CviKI_1	RGCY	4 cut(s)	22, 50, 97, 229
DdeI	CTNAG	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	51, 77
EarI	CTCTTC	2 cut(s)	51, 77
Eco130I	CCWWGG	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	4 cut(s)	102, 202, 220, 234
FaiI	YATR	4 cut(s)	100, 200, 218, 232
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	4 cut(s)	98, 198, 216, 230
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	2 cut(s)	17, 104
GluI	GCNGC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	102, 202, 220, 234
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	195, 216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	1 cut(s)	181
Hsp92II	CATG	4 cut(s)	102, 202, 220, 234
LpnPI	CCDG	2 cut(s)	109, 124
MaeI	CTAG	2 cut(s)	17, 104
MaeIII	GTNAC	2 cut(s)	152, 202
MboII	GAAGA	5 cut(s)	25, 68, 94, 182, 185
Mph1103I	ATGCAT	1 cut(s)	218
MslI	CAYNNNNRTG	2 cut(s)	211, 235
MspA1I	CMGCKG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	192
NlaIII	CATG	4 cut(s)	102, 202, 220, 234
NmuCI	GTSAC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	211, 235
SatI	GCNGC	1 cut(s)	187
SmiMI	CAYNNNNRTG	2 cut(s)	211, 235
SsiI	CCGC	2 cut(s)	114, 186
SspMI	CTAG	2 cut(s)	17, 104
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	64
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	67
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	79
XceI	RCATGY	1 cut(s)	220
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	2 cut(s)	17, 104
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.