Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001621

Physical Location & Seq

Genomic Coordinates Reverse (-)

17528015 .. 17533529

Gene Structure 5515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG166500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATTCCCTTCATCTTATTGCTATTCTTCTCGTCCAACATAGTCCATGCTGAAGTTTTAGATATTCCAGAAATCAAAGAGCAGGCAAAGTTGCAGGTGGAGATGAAGATTATTAGGGTGAAGAGAATAAGCGTACCGCTCCAAGAAATGGGAAGAATCAGGTTCATTGACCTCATGTTTTTGCTCTTCATTCTCTTGCTGCCACCAGAGATGCAGGTGCAAGTTGGAGCTGATGAATGTGAGTATCGAAGCGCACATTTCAGGGGGCTCTGCATCGGACGCAATCACGAGTGCTACATCTGTTGCCAGGAGGAAGGTTTTGATCGGGGCTCATGCAAAGGTTTCTCAACCGTCATTGTATCTGCACTAAGCCTTGTGGATCACCTGGAGGTCCTCCTACCTACGAACCTCCTCCTCCTCCAGAAGAAGATGTTCCTCCTCCTCCCGAAGAAGATGTTCGTCCTACTCCTGAAGAAGTTCCCATTAATTAGTGAAACTAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

168

Amino Acids

19.37

Weight (kDa)

6.89

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	80 - 116	4.8e-06	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63660
fragaria_vesca	FvH4_3g14460 FvH4_3g14470 FvH4_3g14470 FvH4_3g14600 FvH4_3g14600 FvH4_3g14600 FvH4_3g14620 FvH4_3g14630 FvH4_5g33001
malus_domestica	MD00G1135500.v1.1 MD05G1234500.v1.1 MD05G1234800.v1.1
prunus_persica	Prupe.1G201200_v2.0.a1 Prupe.4G131400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0024061 RchiOBHm_Chr5g0024081 RchiOBHm_Chr5g0024091 RchiOBHm_Chr7g0227171 RchiOBHm_Chr7g0231101
rosa_laevigata	RLG00000032732 RLG00000032759
rosa_multiflora	Rmu_sc0004593.1_g000016 Rmu_sc0020340.1_g000001 Rmu_sc0020587.1_g000002 Rmu_sc0035288.1_g000001 Rmu_ssc0000027.1_g000017
rosa_roxburghii	Rroxscaffold_1G00055150 Rroxscaffold_1G00055160 Rroxscaffold_1G00055170 Rroxscaffold_1G00055460 Rroxscaffold_3G00229570
rosa_rugosa	Rorug05G0079300 Rorug07G0264600
rosa_samantha	Rh5AG171800 Rh5AG171900 Rh5AG172100 Rh5BG166500 Rh5BG168500 Rh5BG168600 Rh5CG184000 Rh5CG184300 Rh5DG170600 Rh5DG170700 Rh7DG388400
rosa_wichuraiana	Rw0G003220 Rw0G010770 Rw5G015290 Rw7G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	85, 205
Acc36I	ACCTGC	2 cut(s)	85, 205
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccBSI	CCGCTC	1 cut(s)	139
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	387
AcuI	CTGAAG	2 cut(s)	72, 491
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	306, 384
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
AlwI	GGATC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	199
AseI	ATTAAT	1 cut(s)	485
Asp700I	GAANNNNTTC	3 cut(s)	431, 455, 476
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	130, 374
AvaII	GGWCC	1 cut(s)	391
BanII	GRGCYC	2 cut(s)	270, 332
BauI	CACGAG	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	186
BciT130I	CCWGG	2 cut(s)	308, 386
BfuAI	ACCTGC	2 cut(s)	85, 205
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	308, 386
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmrFI	CCNGG	2 cut(s)	308, 386
BmsI	GCATC	2 cut(s)	201, 282
BpmI	CTGGAG	2 cut(s)	404, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
BseBI	CCWGG	2 cut(s)	308, 386
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseRI	GAGGAG	5 cut(s)	401, 404, 407, 428, 431
BseXI	GCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	270, 332
Bsp143I	GATC	2 cut(s)	322, 379
BspACI	CCGC	1 cut(s)	137
BspMI	ACCTGC	2 cut(s)	85, 205
BspPI	GGATC	1 cut(s)	387
BspQI	GCTCTTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	139
BssMI	GATC	2 cut(s)	322, 379
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	308, 386
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	116, 191
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	2 cut(s)	325, 382
BstMBI	GATC	2 cut(s)	322, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	2 cut(s)	308, 386
BstSCI	CCNGG	2 cut(s)	306, 384
BstV1I	GCAGC	1 cut(s)	186
BveI	ACCTGC	2 cut(s)	85, 205
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	3 cut(s)	47, 175, 333
CviJI	RGCY	4 cut(s)	230, 268, 330, 372
CviKI_1	RGCY	4 cut(s)	230, 268, 330, 372
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	2 cut(s)	324, 381
DpnII	GATC	2 cut(s)	322, 379
Eam1104I	CTCTTC	2 cut(s)	116, 191
EarI	CTCTTC	2 cut(s)	116, 191
Eco24I	GRGCYC	2 cut(s)	270, 332
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	2 cut(s)	72, 491
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	306, 384
EcoT38I	GRGCYC	2 cut(s)	270, 332
FaeI	CATG	3 cut(s)	50, 178, 336
FaiI	YATR	4 cut(s)	41, 48, 176, 334
FatI	CATG	3 cut(s)	46, 174, 332
Fnu4HI	GCNGC	1 cut(s)	200
FriOI	GRGCYC	2 cut(s)	270, 332
Fsp4HI	GCNGC	1 cut(s)	200
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	200
GsuI	CTGGAG	2 cut(s)	404, 407
HgaI	GACGC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	50, 178, 336
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	2 cut(s)	4, 156
HphI	GGTGA	2 cut(s)	130, 374
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	5 cut(s)	68, 287, 421, 445, 469
HpyAV	CCTTC	2 cut(s)	19, 308
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	6 cut(s)	94, 214, 220, 273, 336, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	50, 178, 336
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	322, 379
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	2 cut(s)	144, 227
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	2 cut(s)	201, 282
MalI	GATC	2 cut(s)	324, 381
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	2 cut(s)	322, 379
MhlI	GDGCHC	2 cut(s)	270, 332
MluCI	AATT	1 cut(s)	486
MmeI	TCCRAC	2 cut(s)	60, 205
MroXI	GAANNNNTTC	3 cut(s)	431, 455, 476
MseI	TTAA	1 cut(s)	485
MspR9I	CCNGG	2 cut(s)	308, 386
MvaI	CCWGG	2 cut(s)	308, 386
MwoI	GCNNNNNNNGC	1 cut(s)	279
NdeII	GATC	2 cut(s)	322, 379
NlaIII	CATG	3 cut(s)	50, 178, 336
PaqCI	CACCTGC	2 cut(s)	85, 205
PciSI	GCTCTTC	1 cut(s)	191
PdmI	GAANNNNTTC	3 cut(s)	431, 455, 476
PfeI	GAWTC	2 cut(s)	4, 156
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	391
PshBI	ATTAAT	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	306, 384
PspGI	CCWGG	2 cut(s)	306, 384
PspPI	GGNCC	1 cut(s)	391
PspPPI	RGGWCCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	2 cut(s)	322, 379
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	308, 386
SduI	GDGCHC	2 cut(s)	270, 332
SfaNI	GCATC	2 cut(s)	201, 282
SinI	GGWCC	1 cut(s)	391
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	306, 384
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	247
TasI	AATT	1 cut(s)	486
TfiI	GAWTC	2 cut(s)	4, 156
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	4 cut(s)	119, 154, 178, 249
Van91I	CCANNNNNTGG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	391
VspI	ATTAAT	1 cut(s)	485
XmnI	GAANNNNTTC	3 cut(s)	431, 455, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.