Rh5CG184300

Knottins

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
18451169 .. 18451480
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG184300.1

Sequence Viewer

Length: 228 bp
ATGGATAGGAAGTTCTTGGGGCTTTTACTGTTCTTCATCATCCTCCTGAATTCTCAAGAGATGGTGATTCGCAGCGAAGCGAAGATATGCGAAGTCCCGAGCAAAACATTCAAGGGGTTGTGCGTCAAGGACAGGAACTGTGTCGTGAGATGTCACAGTGAGGGTTACGGTAACGGCAAATGCTCCCATGTCCGACGACAGTGCATGTGCTTGAAGATTTGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.61

Weight (kDa)

9.04

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 28 - 74 8.7e-15 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 49
AgsI TTSAA 2 cut(s) 112, 214
AloI GAACNNNNNNTCC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 97
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 39
BseGI GGATG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 97
Bst4CI ACNGT 5 cut(s) 30, 140, 158, 170, 201
BstF5I GGATG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 163, 206
CaiI CAGNNNCTG 1 cut(s) 138
CseI GACGC 1 cut(s) 112
CviAII CATG 2 cut(s) 188, 205
CviJI RGCY 1 cut(s) 22
CviKI_1 RGCY 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 49
FaeI CATG 2 cut(s) 191, 208
FaiI YATR 3 cut(s) 88, 189, 206
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 187, 204
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 73
HgaI GACGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 191, 208
HinfI GANTC 1 cut(s) 67
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 4 cut(s) 46, 56, 97, 145
Hpy99I CGWCG 1 cut(s) 198
HpyCH4III ACNGT 5 cut(s) 30, 140, 158, 170, 201
HpyCH4V TGCA 1 cut(s) 204
Hsp92II CATG 2 cut(s) 191, 208
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 2 cut(s) 59, 118
Lsp1109I GCAGC 1 cut(s) 84
MaeIII GTNAC 4 cut(s) 152, 164, 170, 221
MboII GAAGA 3 cut(s) 25, 94, 226
MluCI AATT 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 2 cut(s) 53, 154
NlaIII CATG 2 cut(s) 191, 208
NmuCI GTSAC 2 cut(s) 152, 221
NspI RCATGY 1 cut(s) 208
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 138
SatI GCNGC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 1 cut(s) 49
TaaI ACNGT 5 cut(s) 30, 140, 158, 170, 201
TasI AATT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 2 cut(s) 163, 206
TseFI GTSAC 2 cut(s) 152, 221
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 2 cut(s) 152, 221
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 2 cut(s) 163, 206
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.