Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001621

Physical Location & Seq

Genomic Coordinates Forward (+)

9010137 .. 9010843

Gene Structure 707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGACAGAAAGTTCCTGGGGCTTGTTTTGTTCTTCATCGTCCTCTTGGCTTCTGAAGAGACGGTGATTCGCAGTGAAGCGCAGACAAAACCAAAACCAAAACAATGCCTAGTCCCCAGCGGAACATTCGTGGGGATGTGCTTCGATAACAGCAGATGTAACCAGGCTTGTATTGAAGAAGATTACGTAGGCGGCAGATGCACCGTGGACGCCACACGAAAATGCATGTGCTTCAAGCCATGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

83

Amino Acids

9.17

Weight (kDa)

8.14

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	35 - 81	6.8e-13	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63660
fragaria_vesca	FvH4_3g14460 FvH4_3g14470 FvH4_3g14470 FvH4_3g14600 FvH4_3g14600 FvH4_3g14600 FvH4_3g14620 FvH4_3g14630 FvH4_5g33001
malus_domestica	MD00G1135500.v1.1 MD05G1234500.v1.1 MD05G1234800.v1.1
prunus_persica	Prupe.1G201200_v2.0.a1 Prupe.4G131400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0024061 RchiOBHm_Chr5g0024081 RchiOBHm_Chr5g0024091 RchiOBHm_Chr7g0227171 RchiOBHm_Chr7g0231101
rosa_laevigata	RLG00000032732 RLG00000032759
rosa_multiflora	Rmu_sc0004593.1_g000016 Rmu_sc0020340.1_g000001 Rmu_sc0020587.1_g000002 Rmu_sc0035288.1_g000001 Rmu_ssc0000027.1_g000017
rosa_roxburghii	Rroxscaffold_1G00055150 Rroxscaffold_1G00055160 Rroxscaffold_1G00055170 Rroxscaffold_1G00055460 Rroxscaffold_3G00229570
rosa_rugosa	Rorug05G0079300 Rorug07G0264600
rosa_samantha	Rh5AG171800 Rh5AG171900 Rh5AG172100 Rh5BG166500 Rh5BG168500 Rh5BG168600 Rh5CG184000 Rh5CG184300 Rh5DG170600 Rh5DG170700 Rh7DG388400
rosa_wichuraiana	Rw0G003220 Rw0G010770 Rw5G015290 Rw7G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	120, 192
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	176, 235
AjnI	CCWGG	2 cut(s)	15, 162
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	76
BciT130I	CCWGG	2 cut(s)	17, 164
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	17, 164
BmrFI	CCNGG	2 cut(s)	17, 164
BmsI	GCATC	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	16, 204
BseBI	CCWGG	2 cut(s)	17, 164
BseDI	CCNNGG	2 cut(s)	16, 204
BseGI	GGATG	1 cut(s)	141
BseYI	CCCAGC	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	98
BspACI	CCGC	2 cut(s)	120, 192
BssECI	CCNNGG	2 cut(s)	16, 204
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	17, 164
Bst4CI	ACNGT	2 cut(s)	64, 205
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	187
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	2 cut(s)	17, 164
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	15, 162
BstSNI	TACGTA	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
CfoI	GCGC	1 cut(s)	82
CseI	GACGC	1 cut(s)	218
CviAII	CATG	2 cut(s)	226, 240
CviJI	RGCY	4 cut(s)	22, 50, 167, 238
CviKI_1	RGCY	4 cut(s)	22, 50, 167, 238
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco105I	TACGTA	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	15, 162
EcoT22I	ATGCAT	1 cut(s)	227
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	2 cut(s)	229, 243
FaiI	YATR	2 cut(s)	227, 241
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	225, 239
Fnu4HI	GCNGC	1 cut(s)	193
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	193
GsaI	CCCAGC	1 cut(s)	120
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	229, 243
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	64, 205
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	201, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	229, 243
HspAI	GCGC	1 cut(s)	80
LpnPI	CCDG	5 cut(s)	2, 29, 130, 149, 176
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	158
MboII	GAAGA	4 cut(s)	25, 68, 188, 191
MnlI	CCTC	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	227
MslI	CAYNNNNRTG	2 cut(s)	220, 244
MspA1I	CMGCKG	1 cut(s)	120
MspR9I	CCNGG	2 cut(s)	17, 164
MvaI	CCWGG	2 cut(s)	17, 164
MwoI	GCNNNNNNNGC	1 cut(s)	198
NlaIII	CATG	2 cut(s)	229, 243
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	15, 162
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	2 cut(s)	15, 162
RseI	CAYNNNNRTG	2 cut(s)	220, 244
SatI	GCNGC	1 cut(s)	193
ScrFI	CCNGG	2 cut(s)	17, 164
SetI	ASST	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	220, 244
SnaBI	TACGTA	1 cut(s)	187
SsiI	CCGC	2 cut(s)	120, 192
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	15, 162
TaaI	ACNGT	2 cut(s)	64, 205
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	144
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	67
TscAI	CASTG	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	79
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.