Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020340.1

Orthogroup ID

OG0001621

Physical Location & Seq

Genomic Coordinates Forward (+)

3785 .. 4122

Gene Structure 338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020340.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

atggacaggaagttcttagggcttgttttgttcttcgtcatcctcctgacttctcaagagacggtgatgcagagtgaagcaaagatctgcgagtacccaagcagaacattcaaagggctgtgcgtcaaggacaaaaactgtgttgtgaggtgtcggagtgagggttacaattacggcaaatgctcccatgtccgccgacgatgtaggtgcttcaagccttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

74

Amino Acids

8.68

Weight (kDa)

9.43

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63660
fragaria_vesca	FvH4_3g14460 FvH4_3g14470 FvH4_3g14470 FvH4_3g14600 FvH4_3g14600 FvH4_3g14600 FvH4_3g14620 FvH4_3g14630 FvH4_5g33001
malus_domestica	MD00G1135500.v1.1 MD05G1234500.v1.1 MD05G1234800.v1.1
prunus_persica	Prupe.1G201200_v2.0.a1 Prupe.4G131400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0024061 RchiOBHm_Chr5g0024081 RchiOBHm_Chr5g0024091 RchiOBHm_Chr7g0227171 RchiOBHm_Chr7g0231101
rosa_laevigata	RLG00000032732 RLG00000032759
rosa_multiflora	Rmu_sc0004593.1_g000016 Rmu_sc0020340.1_g000001 Rmu_sc0020587.1_g000002 Rmu_sc0035288.1_g000001 Rmu_ssc0000027.1_g000017
rosa_roxburghii	Rroxscaffold_1G00055150 Rroxscaffold_1G00055160 Rroxscaffold_1G00055170 Rroxscaffold_1G00055460 Rroxscaffold_3G00229570
rosa_rugosa	Rorug05G0079300 Rorug07G0264600
rosa_samantha	Rh5AG171800 Rh5AG171900 Rh5AG172100 Rh5BG166500 Rh5BG168500 Rh5BG168600 Rh5CG184000 Rh5CG184300 Rh5DG170600 Rh5DG170700 Rh7DG388400
rosa_wichuraiana	Rw0G003220 Rw0G010770 Rw5G015290 Rw7G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	193
AfaI	GTAC	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	112, 214
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BcoDI	GTCTC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	84
BmsI	GCATC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
BseGI	GGATG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	193
BssMI	GATC	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	64, 140
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	39
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	3 cut(s)	22, 118, 217
CviKI_1	RGCY	3 cut(s)	22, 118, 217
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	1 cut(s)	191
FaiI	YATR	1 cut(s)	189
FatI	CATG	1 cut(s)	187
FokI	GGATG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	46, 56
Hpy99I	CGWCG	1 cut(s)	201
HpyCH4III	ACNGT	2 cut(s)	64, 140
HpyCH4V	TGCA	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	1 cut(s)	59
LweI	GCATC	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	53, 141, 154
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	84
SetI	ASST	2 cut(s)	152, 209
SfaNI	GCATC	1 cut(s)	57
SgeI	CNNG	8 cut(s)	19, 35, 58, 68, 103, 111, 139, 200
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	64, 140
TasI	AATT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.