Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001621

Physical Location & Seq

Genomic Coordinates Reverse (-)

36687246 .. 36688097

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1234500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAGAGGAACTACTTTGGTCTTGTTTTGTTCTTCATCATCCTCTTAACTTCTAACGAGATGGTGATGCACAGTGAAGCTAGGGTTTGTGAAGTTCCAAGCAAAACATTCAGAGGGTTATGCTTCAGCGATACCCATTGTATCGTGAAATGCCACAGTGAGGGTTTCGGTTACGGCAAATGCTCCCATGTCCTGCGTCAGTGCCGGTGCCTAAAGGCTTGTGGGCGGCTAGCTGAAAGTGAAACTACTCATGGAACTGAAACCTCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

91

Amino Acids

10.14

Weight (kDa)

7.6

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	28 - 74	1.1e-12	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63660
fragaria_vesca	FvH4_3g14460 FvH4_3g14470 FvH4_3g14470 FvH4_3g14600 FvH4_3g14600 FvH4_3g14600 FvH4_3g14620 FvH4_3g14630 FvH4_5g33001
malus_domestica	MD00G1135500.v1.1 MD05G1234500.v1.1 MD05G1234800.v1.1
prunus_persica	Prupe.1G201200_v2.0.a1 Prupe.4G131400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0024061 RchiOBHm_Chr5g0024081 RchiOBHm_Chr5g0024091 RchiOBHm_Chr7g0227171 RchiOBHm_Chr7g0231101
rosa_laevigata	RLG00000032732 RLG00000032759
rosa_multiflora	Rmu_sc0004593.1_g000016 Rmu_sc0020340.1_g000001 Rmu_sc0020587.1_g000002 Rmu_sc0035288.1_g000001 Rmu_ssc0000027.1_g000017
rosa_roxburghii	Rroxscaffold_1G00055150 Rroxscaffold_1G00055160 Rroxscaffold_1G00055170 Rroxscaffold_1G00055460 Rroxscaffold_3G00229570
rosa_rugosa	Rorug05G0079300 Rorug07G0264600
rosa_samantha	Rh5AG171800 Rh5AG171900 Rh5AG172100 Rh5BG166500 Rh5BG168500 Rh5BG168600 Rh5CG184000 Rh5CG184300 Rh5DG170600 Rh5DG170700 Rh7DG388400
rosa_wichuraiana	Rw0G003220 Rw0G010770 Rw5G015290 Rw7G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	80, 233
AluI	AGCT	2 cut(s)	80, 233
AsuHPI	GGTGA	2 cut(s)	76, 258
AsuNHI	GCTAGC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	207
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	81, 230
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	1 cut(s)	57
BmtI	GCTAGC	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	204
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	160
BspACI	CCGC	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	209
BspOI	GCTAGC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	74, 158
BstC8I	GCNNGC	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	79, 163, 206
Cac8I	GCNNGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	204
CseI	GACGC	1 cut(s)	185
CviAII	CATG	2 cut(s)	188, 251
CviJI	RGCY	4 cut(s)	80, 218, 229, 233
CviKI_1	RGCY	4 cut(s)	80, 218, 229, 233
Eco57I	CTGAAG	1 cut(s)	109
FaeI	CATG	2 cut(s)	191, 254
FaiI	YATR	4 cut(s)	121, 189, 252, 271
FatI	CATG	2 cut(s)	187, 250
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	2 cut(s)	81, 230
GluI	GCNGC	1 cut(s)	227
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	191, 254
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	76, 258
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	74, 158
HpyCH4V	TGCA	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	191, 254
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	2 cut(s)	206, 218
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	2 cut(s)	81, 230
MaeIII	GTNAC	1 cut(s)	170
MboII	GAAGA	1 cut(s)	25
MnlI	CCTC	3 cut(s)	53, 107, 154
MseI	TTAA	1 cut(s)	47
MspI	CCGG	1 cut(s)	205
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	191, 254
NlaIV	GGNNCC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	1 cut(s)	227
SetI	ASST	3 cut(s)	82, 235, 266
SfaNI	GCATC	1 cut(s)	57
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	81, 230
TaaI	ACNGT	2 cut(s)	74, 158
TauI	GCSGC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	3 cut(s)	79, 163, 206
TspDTI	ATGAA	1 cut(s)	25
TspRI	CASTG	3 cut(s)	79, 163, 206
XspI	CTAG	2 cut(s)	81, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.