Rroxscaffold_1G00055460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001621
Physical Location & Seq
Forward (+)
76858327 .. 76863132
4806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055460.1

Sequence Viewer

Length: 582 bp
ATGTCCGCCGGCGACGAGACCACCGCACGGCTTCGCCTCCTCCTCGCGGTTGTCCCCTTGGTGCTCGATCACGACGAAGCCACCGAAACATGGAGATCGGAGCAGCCACGCATCCAAAAACGGATCCTACCGGATTTCCCCGATTCCGACATGGGACGGCCGATCCTCCTCATTTTTGGGGTGGCTAGAAGTATATATATGGCTGCTGGTATGTTGATGTTGTGGTCTACGGTTGCTAGGTTTCAATGTGTTCATCATGGGAGATGCAGGTGCAAGTTGGAGCTGATGAATGTGAGTATCGAAGCGCACATTTCAGGGGGCCCTGCTTCGGACGCAATCACGAGTGCTACATCTGTTGCCAGGAGGAAGGTTTTGATCGCGGCTCATGCATGCAAAGGGTTTCTCAACCGTCATTGTATCTGCACTAAGCCTTGTGGATCACCTGGAGGTCCTCCTACCTACGAACCTCCTCCTCCTCCTACTCCAGAAGAAGATGTTCCTCCTCCTCCAGAGGAAGATGTTCCTCCTCCTCCCGAAGAAGATGTTCCTCCTACTCCCGAAGAAGAAGCTCCCATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.01

Weight (kDa)

5.23

Isoelectric Point (pI)

76.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 258
AccI GTMKAC 1 cut(s) 227
AccII CGCG 2 cut(s) 47, 380
AciI CCGC 4 cut(s) 6, 24, 47, 380
AclWI GGATC 4 cut(s) 118, 131, 157, 445
AcoI YGGCCR 1 cut(s) 158
AfiI CCNNNNNNNGG 4 cut(s) 27, 46, 90, 328
AgsI TTSAA 1 cut(s) 245
AjnI CCWGG 2 cut(s) 359, 442
AluBI AGCT 2 cut(s) 283, 569
AluI AGCT 2 cut(s) 283, 569
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 4 cut(s) 118, 131, 157, 445
AoxI GGCC 2 cut(s) 158, 319
ApaI GGGCCC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 103, 203
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 3 cut(s) 495, 519, 543
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 3 cut(s) 319, 320, 449
AsuHPI GGTGA 1 cut(s) 432
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 323
BamHI GGATCC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 323
BauI CACGAG 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 115, 190
BceAI ACGGC 2 cut(s) 44, 173
BciT130I CCWGG 2 cut(s) 361, 444
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 186, 237
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 3 cut(s) 104, 204, 381
BlsI GCNGC 3 cut(s) 105, 205, 382
Bme1390I CCNGG 2 cut(s) 361, 444
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 3 cut(s) 319, 320, 449
BmiI GGNNCC 3 cut(s) 125, 320, 321
BmrFI CCNGG 2 cut(s) 361, 444
BmsI GCATC 2 cut(s) 120, 254
BpmI CTGGAG 3 cut(s) 465, 468, 492
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 46, 90, 328
Bse118I RCCGGY 1 cut(s) 8
BseBI CCWGG 2 cut(s) 361, 444
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 4 cut(s) 27, 46, 90, 328
BseSI GKGCMC 1 cut(s) 323
BseX3I CGGCCG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 115, 190
BsgI GTGCAG 1 cut(s) 406
Bsh1236I CGCG 2 cut(s) 47, 380
Bsh1285I CGRYCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 160, 321
BsiEI CGRYCG 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 9, 131
BslFI GGGAC 2 cut(s) 38, 168
BslI CCNNNNNNNGG 4 cut(s) 27, 46, 90, 328
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 2 cut(s) 38, 168
BsnI GGCC 2 cut(s) 160, 321
Bso31I GGTCTC 1 cut(s) 11
Bsp120I GGGCCC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 66, 323
Bsp143I GATC 6 cut(s) 67, 95, 123, 162, 375, 437
BspACI CCGC 4 cut(s) 6, 24, 47, 380
BspANI GGCC 2 cut(s) 160, 321
BspFNI CGCG 2 cut(s) 47, 380
BspLI GGNNCC 3 cut(s) 125, 320, 321
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 4 cut(s) 118, 131, 157, 445
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 6 cut(s) 67, 95, 123, 162, 375, 437
BssSI CACGAG 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 340
Bst2UI CCWGG 2 cut(s) 361, 444
Bst4CI ACNGT 2 cut(s) 232, 410
BstC8I GCNNGC 2 cut(s) 10, 391
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 47, 380
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 6 cut(s) 70, 98, 126, 165, 378, 440
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 6 cut(s) 67, 95, 123, 162, 375, 437
BstMCI CGRYCG 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 332, 386
BstNI CCWGG 2 cut(s) 361, 444
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 2 cut(s) 359, 442
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 2 cut(s) 47, 380
BstV1I GCAGC 2 cut(s) 115, 190
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZI CGGCCG 1 cut(s) 158
BsuRI GGCC 2 cut(s) 160, 321
BtsCI GGATG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 10, 391
CfoI GCGC 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 3 cut(s) 319, 320, 449
CseI GACGC 1 cut(s) 341
CviAII CATG 5 cut(s) 90, 151, 257, 386, 390
DdeI CTNAG 1 cut(s) 426
DpnI GATC 6 cut(s) 69, 97, 125, 164, 377, 439
DpnII GATC 6 cut(s) 67, 95, 123, 162, 375, 437
EaeI YGGCCR 1 cut(s) 158
EagI CGGCCG 1 cut(s) 158
EclXI CGGCCG 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 449
Eco52I CGGCCG 1 cut(s) 158
EcoO109I RGGNCCY 3 cut(s) 319, 320, 449
EcoRII CCWGG 2 cut(s) 359, 442
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 5 cut(s) 93, 154, 260, 389, 393
FaqI GGGAC 2 cut(s) 38, 168
FatI CATG 5 cut(s) 89, 150, 256, 385, 389
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 3 cut(s) 104, 204, 381
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 3 cut(s) 104, 204, 381
FspBI CTAG 2 cut(s) 186, 237
GlaI GCGC 1 cut(s) 306
GluI GCNGC 3 cut(s) 104, 204, 381
GsuI CTGGAG 3 cut(s) 465, 468, 492
HaeIII GGCC 2 cut(s) 160, 321
HapII CCGG 2 cut(s) 9, 131
HgaI GACGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 307
Hin1II CATG 5 cut(s) 93, 154, 260, 389, 393
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 1 cut(s) 143
HpaII CCGG 2 cut(s) 9, 131
HphI GGTGA 1 cut(s) 432
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 3 cut(s) 100, 148, 331
Hpy188III TCNNGA 6 cut(s) 71, 340, 485, 509, 533, 557
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 2 cut(s) 17, 77
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 2 cut(s) 232, 410
HpyCH4V TGCA 5 cut(s) 267, 273, 389, 393, 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 386
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 5 cut(s) 93, 154, 260, 389, 393
HspAI GCGC 1 cut(s) 305
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Kzo9I GATC 6 cut(s) 67, 95, 123, 162, 375, 437
LmnI GCTCC 3 cut(s) 100, 280, 574
Lsp1109I GCAGC 2 cut(s) 115, 190
LweI GCATC 2 cut(s) 120, 254
MaeI CTAG 2 cut(s) 186, 237
MalI GATC 6 cut(s) 69, 97, 125, 164, 377, 439
MboI GATC 6 cut(s) 67, 95, 123, 162, 375, 437
MboII GAAGA 7 cut(s) 500, 503, 527, 548, 551, 572, 575
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 66, 323
MluCI AATT 1 cut(s) 577
MmeI TCCRAC 2 cut(s) 171, 258
Mph1103I ATGCAT 1 cut(s) 391
MreI CGCCGGCG 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 8
MroXI GAANNNNTTC 3 cut(s) 495, 519, 543
MseI TTAA 1 cut(s) 576
MspI CCGG 2 cut(s) 9, 131
MspR9I CCNGG 2 cut(s) 361, 444
MvaI CCWGG 2 cut(s) 361, 444
MvnI CGCG 2 cut(s) 47, 380
MwoI GCNNNNNNNGC 2 cut(s) 332, 386
NaeI GCCGGC 1 cut(s) 10
NdeII GATC 6 cut(s) 67, 95, 123, 162, 375, 437
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 5 cut(s) 93, 154, 260, 389, 393
NlaIV GGNNCC 3 cut(s) 125, 320, 321
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 1 cut(s) 393
PaeI GCATGC 1 cut(s) 393
PaqCI CACCTGC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 81
PdiI GCCGGC 1 cut(s) 10
PdmI GAANNNNTTC 3 cut(s) 495, 519, 543
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 105, 205, 382
PpuMI RGGWCCY 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 2 cut(s) 359, 442
PspGI CCWGG 2 cut(s) 359, 442
PspN4I GGNNCC 3 cut(s) 125, 320, 321
PspOMI GGGCCC 1 cut(s) 319
PspPI GGNCC 3 cut(s) 319, 320, 449
PspPPI RGGWCCY 1 cut(s) 449
PsuI RGATCY 1 cut(s) 123
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 3 cut(s) 104, 204, 381
Sau3AI GATC 6 cut(s) 67, 95, 123, 162, 375, 437
Sau96I GGNCC 3 cut(s) 319, 320, 449
ScrFI CCNGG 2 cut(s) 361, 444
SduI GDGCHC 2 cut(s) 66, 323
SetI ASST 9 cut(s) 242, 272, 285, 372, 445, 451, 461, 469, 571
SfaNI GCATC 2 cut(s) 120, 254
SgrAI CRCCGGYG 1 cut(s) 8
SinI GGWCC 1 cut(s) 449
SphI GCATGC 1 cut(s) 393
Sse9I AATT 1 cut(s) 577
SsiI CCGC 4 cut(s) 6, 24, 47, 380
SspMI CTAG 2 cut(s) 186, 237
StyD4I CCNGG 2 cut(s) 359, 442
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 232, 410
TaqI TCGA 2 cut(s) 66, 300
TasI AATT 1 cut(s) 577
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TseI GCWGC 2 cut(s) 103, 203
TspDTI ATGAA 2 cut(s) 242, 302
TspGWI ACGGA 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 449
VspI ATTAAT 1 cut(s) 576
XceI RCATGY 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 3 cut(s) 495, 519, 543
XspI CTAG 2 cut(s) 186, 237
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.