Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001621

Physical Location & Seq

Genomic Coordinates Reverse (-)

8927476 .. 8928174

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGACAAAAAGTTCCTGGGGCTTGTTTTGTTCTTCATCGTTCTCTTGGCTTCTGAAGAGACGGTGATTCGCAGTGAGGCGCAGAGAAAAATATGCCAAGTCCGCAGCAGAACATTCAAAGGGATGTGCTTCAATAATAGAAAATGTAACCAGTGTTGTCTTCAAGAAGATTACTTAGGCGGCAAATGCATCCCTGCCACACAAAAATGCGTATGCTTCAAGCCATGTGTGACTAATCTTAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

83

Amino Acids

9.4

Weight (kDa)

9.23

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	30 - 76	7.5e-12	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63660
fragaria_vesca	FvH4_3g14460 FvH4_3g14470 FvH4_3g14470 FvH4_3g14600 FvH4_3g14600 FvH4_3g14600 FvH4_3g14620 FvH4_3g14630 FvH4_5g33001
malus_domestica	MD00G1135500.v1.1 MD05G1234500.v1.1 MD05G1234800.v1.1
prunus_persica	Prupe.1G201200_v2.0.a1 Prupe.4G131400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0024061 RchiOBHm_Chr5g0024081 RchiOBHm_Chr5g0024091 RchiOBHm_Chr7g0227171 RchiOBHm_Chr7g0231101
rosa_laevigata	RLG00000032732 RLG00000032759
rosa_multiflora	Rmu_sc0004593.1_g000016 Rmu_sc0020340.1_g000001 Rmu_sc0020587.1_g000002 Rmu_sc0035288.1_g000001 Rmu_ssc0000027.1_g000017
rosa_roxburghii	Rroxscaffold_1G00055150 Rroxscaffold_1G00055160 Rroxscaffold_1G00055170 Rroxscaffold_1G00055460 Rroxscaffold_3G00229570
rosa_rugosa	Rorug05G0079300 Rorug07G0264600
rosa_samantha	Rh5AG171800 Rh5AG171900 Rh5AG172100 Rh5BG166500 Rh5BG168500 Rh5BG168600 Rh5CG184000 Rh5CG184300 Rh5DG170600 Rh5DG170700 Rh7DG388400
rosa_wichuraiana	Rw0G003220 Rw0G010770 Rw5G015290 Rw7G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	103, 180
AcuI	CTGAAG	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	118, 133, 164, 220
AjnI	CCWGG	1 cut(s)	15
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	246
AluI	AGCT	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	106, 181
BlsI	GCNGC	2 cut(s)	107, 182
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	129, 189
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
BspACI	CCGC	2 cut(s)	103, 180
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	175, 239
BstF5I	GGATG	2 cut(s)	129, 189
BstHHI	GCGC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 186
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	129, 189
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	79, 158
CfoI	GCGC	1 cut(s)	82
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	4 cut(s)	22, 50, 223, 246
CviKI_1	RGCY	4 cut(s)	22, 50, 223, 246
DdeI	CTNAG	2 cut(s)	175, 239
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	15
EcoT22I	ATGCAT	1 cut(s)	191
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	1 cut(s)	228
FaiI	YATR	3 cut(s)	94, 214, 226
FatI	CATG	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	106, 181
FokI	GGATG	2 cut(s)	136, 176
Fsp4HI	GCNGC	2 cut(s)	106, 181
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	2 cut(s)	106, 181
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	228
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 186
HpyF3I	CTNAG	2 cut(s)	175, 239
Hsp92II	CATG	1 cut(s)	228
HspAI	GCGC	1 cut(s)	80
LpnPI	CCDG	4 cut(s)	2, 29, 164, 207
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	146, 229
MboII	GAAGA	4 cut(s)	25, 68, 152, 179
MnlI	CCTC	1 cut(s)	70
Mph1103I	ATGCAT	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	102, 186
NlaIII	CATG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	107, 182
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	205
SatI	GCNGC	2 cut(s)	106, 181
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	1 cut(s)	248
SfaNI	GCATC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	205
SsiI	CCGC	2 cut(s)	103, 180
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	64
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	67
TscAI	CASTG	2 cut(s)	79, 158
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	25
TspRI	CASTG	2 cut(s)	79, 158
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.