Prupe.1G201200_v2.0.a1

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001621
Physical Location & Seq
Forward (+)
19818820 .. 19819605
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G201200.1

Sequence Viewer

Length: 228 bp
ATGGAGAGGAGATCTTGCTTTGGGCTTGTACTTTTGCTCTTCATTGTCTTGGCTTCACAAGAGATGGTGGTGCCAAGCGAGGCAAGGGTTTGTCAGTCACAGAGCCATGGGTTCCGTGGACCATGCATCCGCCACCACAACTGTGCTCTCGTCTGCAGGAACGAAGGCTTCTCCGGTGGCAGATGCCGCGGCTTTCGTCGCCGTTGCTTTTGCACTCGCCTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

76

Amino Acids

8.55

Weight (kDa)

9.53

Isoelectric Point (pI)

76.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 1 cut(s) 189
AciI CCGC 3 cut(s) 130, 187, 189
AfaI GTAC 1 cut(s) 30
AleI CACNNNNGTG 1 cut(s) 141
Alw21I GWGCWC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 119
AvaII GGWCC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 154
BglII AGATCT 1 cut(s) 11
BisI GCNGC 2 cut(s) 187, 190
BlsI GCNGC 2 cut(s) 188, 191
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 72, 113
BmsI GCATC 2 cut(s) 135, 173
BsaJI CCNNGG 3 cut(s) 106, 115, 187
BsaWI WCCGGW 1 cut(s) 173
BseDI CCNNGG 3 cut(s) 106, 115, 187
BseGI GGATG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 3 cut(s) 130, 187, 189
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 72, 113
BspMAI CTGCAG 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 106, 115, 187
BssMI GATC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 44
BstDSI CCRYGG 3 cut(s) 106, 115, 187
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 189
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 2 cut(s) 186, 198
BstSFI CTRYAG 1 cut(s) 154
BstUI CGCG 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BtgI CCRYGG 3 cut(s) 106, 115, 187
BtsCI GGATG 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 119
Cfr42I CCGCGG 1 cut(s) 190
Csp6I GTAC 1 cut(s) 29
CviAII CATG 2 cut(s) 107, 123
CviJI RGCY 5 cut(s) 25, 53, 105, 168, 192
CviKI_1 RGCY 5 cut(s) 25, 53, 105, 168, 192
CviQI GTAC 1 cut(s) 29
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 110, 126
FaiI YATR 2 cut(s) 108, 124
FatI CATG 2 cut(s) 106, 122
Fnu4HI GCNGC 2 cut(s) 187, 190
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 187, 190
GluI GCNGC 2 cut(s) 187, 190
HapII CCGG 1 cut(s) 174
Hin1II CATG 2 cut(s) 110, 126
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 126, 156, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 198
Hsp92II CATG 2 cut(s) 110, 126
KspI CCGCGG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 11
LguI GCTCTTC 1 cut(s) 44
LpnPI CCDG 2 cut(s) 142, 187
LweI GCATC 2 cut(s) 135, 173
MaeIII GTNAC 1 cut(s) 96
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 1 cut(s) 31
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 148
MnlI CCTC 1 cut(s) 73
Mph1103I ATGCAT 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 186, 198
NcoI CCATGG 1 cut(s) 106
NdeII GATC 1 cut(s) 11
NlaIII CATG 2 cut(s) 110, 126
NlaIV GGNNCC 2 cut(s) 72, 113
NmuCI GTSAC 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 128
OliI CACNNNNGTG 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 188, 191
PspN4I GGNNCC 2 cut(s) 72, 113
PspPI GGNCC 1 cut(s) 119
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 141
SacII CCGCGG 1 cut(s) 190
SapI GCTCTTC 1 cut(s) 44
SatI GCNGC 2 cut(s) 187, 190
Sau3AI GATC 1 cut(s) 11
Sau96I GGNCC 1 cut(s) 119
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 2 cut(s) 135, 173
SfcI CTRYAG 1 cut(s) 154
Sfr303I CCGCGG 1 cut(s) 190
SgrBI CCGCGG 1 cut(s) 190
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 141
SsiI CCGC 3 cut(s) 130, 187, 189
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 143
TatI WGTACW 1 cut(s) 28
TauI GCSGC 2 cut(s) 189, 192
TseFI GTSAC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.