FvH4_1g00400

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001004
Physical Location & Seq
Reverse (-)
217803 .. 219763
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00400.t1

Sequence Viewer

Length: 1452 bp
ATGGACAAGGCTCTTATTGATCGACCTACAGGTCCCGCGGTAGTAGTTCAGAATAGCAGTGCTGTTTCTGATCAGACTCAGATCTTAGTGTTCCCTTCTCCAGGTCAAGGTCATATGAGCCCAATGATACAATTCTCCAAGCGCCTTGCCTCTAAAGGTGTTAGGGTTACACTAGTCATCACAACCACTTCTAGCAACTCCATACAAACCCATGCAAATTCTTTCAAGGTTGAGGTTATTTCAGATGGCTCCGAACAAGGAAATAAAAAGTCGGAAACTATTGAAGAATATCTTGAGCGTTTCAGAAGGGTAACCACACATACATTAGCCAACCTCATCATCACCAAGATCAAGACCAGTACTTGTACTCCTGGTGCCTCCGAATCTGAATTCAAGCTCTTTGTTTACGATTCATCGATGCCTTGGCTTTCTGATGTAGCGCAACAGCATGGCATAGCTTTTGCTCCATTTTTCACACAGTCCTGTGCAGTAACTGCAATCTACCATCAATTCCATCAAGGAGCGTTCATGACTGAACCGTCAGCTACGGCGACAATGCTATTGCCGTGCTTGCCACCACTAGGAATCAAGGATGTACCTTCTTTTCTGTACGACCATGCCAAATCTTACCCATCTTTGTTCAACTCTTCTAGGGATCAATTCTCTAATTTATCGGAAGCAAAATGCCTGTTGTGGAACACTTTCGATTTGTTGGAAGACGAGGTATTGGAATGGATGACAAGTACTCTGTCTCGGTCAATCATGACAATAGGGCCAACTATTCCATCGATGTTTTTAGACAAGAGGTTTGAGGATGATCTAGACTATAGTTTCAACCTTTACAGCCCTAATGTGGATGCATGCATGAAGTGGCTAGACTGCCAAGAAAACGGCTCAGTTGTTTATGTATCATTTGGAAGCTACGCTAGCCCTAGCAAGGATCAAATGGAGGAAATAGCATGGGGTCTGAAGAACAGCAACTACAACATCCTATGGGTGGTTAAACAATCAGAGAAGGAAAAGCTTCCTATCAATTTCGTGGAGGGAATATCAGAGAAAGGTCTTGTTGTGAGTTGGTGTTCACAGCTACAAGTTTTGGCACACAAAGCTGTGGGATGCTTTGTTACACACTGTGGATGGAATTCGATACTAGAAGCATTGAGCTTGGGGGTACCAATGGTGGCAATGCCACAATGGTCTGATCAAACAACTAATGCCAAGTTTATTGAGGATGTATGGAAAACAGGAGTTAGGGTGAAAGTGAACGAAAAGTTAGGTGTTGCCACAAGAGATGAAATAGCTTGGTGTATTACCACAGTCCTGGAAGAGGGGAGTGGGATGGAGATGAGAAAGGCTTCACTTAAGTGGAAGAGATTGGCTAAAGAAGCAGTCGATGTAGGAGGAAGCTCCGATAAGAACATGGATGAACTTGTTGCAAAACTTGAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

484

Amino Acids

53.75

Weight (kDa)

5.42

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 47 - 423 6.4e-27 UDP-glucoronosyl and UDP-glucosyl transferase
Glyco_tran_28_C PF04101 313 - 412 1.4e-06 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1450
AasI GACNNNNNNGTC 2 cut(s) 30, 538
Acc65I GGTACC 1 cut(s) 1171
AccB1I GGYRCC 2 cut(s) 374, 1171
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 36, 38
AclWI GGATC 2 cut(s) 663, 948
AcsI RAATTY 3 cut(s) 217, 389, 1141
AcuI CTGAAG 1 cut(s) 989
AdeI CACNNNGTG 1 cut(s) 1133
AfaI GTAC 6 cut(s) 361, 367, 597, 611, 745, 1173
AfiI CCNNNNNNNGG 7 cut(s) 101, 107, 581, 853, 937, 997, 1327
AflII CTTAAG 1 cut(s) 1361
AgsI TTSAA 5 cut(s) 226, 284, 394, 643, 835
AhlI ACTAGT 1 cut(s) 172
AjnI CCWGG 3 cut(s) 100, 370, 1320
AleI CACNNNNGTG 1 cut(s) 1363
Alw26I GTCTC 1 cut(s) 756
AlwI GGATC 2 cut(s) 663, 948
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 1 cut(s) 773
ApoI RAATTY 3 cut(s) 217, 389, 1141
ArsI GACNNNNNNTTYG 2 cut(s) 791, 823
Asp700I GAANNNNTTC 3 cut(s) 701, 1023, 1354
Asp718I GGTACC 1 cut(s) 1171
AspLEI GCGC 2 cut(s) 144, 442
AspS9I GGNCC 2 cut(s) 32, 773
AsuHPI GGTGA 2 cut(s) 334, 1267
AsuNHI GCTAGC 1 cut(s) 926
AvaII GGWCC 1 cut(s) 32
BanI GGYRCC 2 cut(s) 374, 1171
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 723
BccI CCATC 7 cut(s) 239, 513, 522, 640, 793, 1131, 1333
BceAI ACGGC 3 cut(s) 550, 564, 907
BciT130I CCWGG 3 cut(s) 102, 372, 1322
BclI TGATCA 2 cut(s) 70, 1201
BcoDI GTCTC 1 cut(s) 756
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 9 cut(s) 173, 192, 581, 651, 821, 875, 927, 933, 1151
BfmI CTRYAG 2 cut(s) 27, 826
BfoI RGCGCY 1 cut(s) 145
BfrI CTTAAG 1 cut(s) 1361
BglII AGATCT 1 cut(s) 81
BmcAI AGTACT 2 cut(s) 361, 745
Bme1390I CCNGG 3 cut(s) 102, 372, 1322
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 32, 773
BmiI GGNNCC 4 cut(s) 34, 250, 376, 1173
BmrFI CCNGG 3 cut(s) 102, 372, 1322
BmsI GCATC 3 cut(s) 408, 847, 1106
BmtI GCTAGC 1 cut(s) 930
BpiI GAAGAC 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 314
Bsa29I ATCGAT 2 cut(s) 416, 788
BsaJI CCNNGG 2 cut(s) 36, 422
BsaXI ACNNNNNCTCC 4 cut(s) 352, 382, 1239, 1269
Bsc4I CCNNNNNNNGG 7 cut(s) 101, 107, 581, 853, 937, 997, 1327
Bse1I ACTGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 1191
BseBI CCWGG 3 cut(s) 102, 372, 1322
BseCI ATCGAT 2 cut(s) 416, 788
BseDI CCNNGG 2 cut(s) 36, 422
BseLI CCNNNNNNNGG 7 cut(s) 101, 107, 581, 853, 937, 997, 1327
BseMI GCAATG 1 cut(s) 1191
BseMII CTCAG 2 cut(s) 92, 909
BseNI ACTGG 1 cut(s) 357
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 775
BshNI GGYRCC 2 cut(s) 374, 1171
BshVI ATCGAT 2 cut(s) 416, 788
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 7 cut(s) 101, 107, 581, 853, 937, 997, 1327
BsmAI GTCTC 1 cut(s) 756
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 775
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 8 cut(s) 19, 70, 81, 348, 655, 817, 940, 1201
BspACI CCGC 2 cut(s) 36, 38
BspANI GGCC 1 cut(s) 775
BspCNI CTCAG 2 cut(s) 91, 908
BspDI ATCGAT 2 cut(s) 416, 788
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 2 cut(s) 528, 762
BspLI GGNNCC 4 cut(s) 34, 250, 376, 1173
BspOI GCTAGC 1 cut(s) 930
BspPI GGATC 2 cut(s) 663, 948
BspT107I GGYRCC 2 cut(s) 374, 1171
BspTI CTTAAG 1 cut(s) 1361
BsrDI GCAATG 1 cut(s) 1191
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 36, 422
BssMI GATC 8 cut(s) 19, 70, 81, 348, 655, 817, 940, 1201
BssT1I CCWWGG 1 cut(s) 422
Bst2UI CCWGG 3 cut(s) 102, 372, 1322
Bst4CI ACNGT 4 cut(s) 480, 540, 1133, 1318
Bst6I CTCTTC 3 cut(s) 652, 1320, 1364
BstAFI CTTAAG 1 cut(s) 1361
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 572, 862, 928
BstDEI CTNAG 3 cut(s) 78, 85, 895
BstDSI CCRYGG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 310
BstENI CCTNNNNNAGG 2 cut(s) 99, 1325
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 2 cut(s) 144, 442
BstKTI GATC 8 cut(s) 22, 73, 84, 351, 658, 820, 943, 1204
BstMAI GTCTC 1 cut(s) 756
BstMBI GATC 8 cut(s) 19, 70, 81, 348, 655, 817, 940, 1201
BstMWI GCNNNNNNNGC 5 cut(s) 494, 571, 927, 1106, 1385
BstNI CCWGG 3 cut(s) 102, 372, 1322
BstNSI RCATGY 1 cut(s) 864
BstPI GGTNACC 1 cut(s) 310
BstSCI CCNGG 3 cut(s) 100, 370, 1320
BstSFI CTRYAG 2 cut(s) 27, 826
BstUI CGCG 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 1321
BstYI RGATCY 1 cut(s) 81
Bsu15I ATCGAT 2 cut(s) 416, 788
BsuRI GGCC 1 cut(s) 775
BsuTUI ATCGAT 2 cut(s) 416, 788
BtgI CCRYGG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 64, 1129
Cac8I GCNNGC 3 cut(s) 572, 862, 928
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 2 cut(s) 528, 762
CfoI GCGC 2 cut(s) 144, 442
Cfr13I GGNCC 2 cut(s) 32, 773
Cfr42I CCGCGG 1 cut(s) 39
ClaI ATCGAT 2 cut(s) 416, 788
Csp6I GTAC 6 cut(s) 360, 366, 596, 610, 744, 1172
CviAII CATG 9 cut(s) 212, 449, 529, 617, 763, 861, 865, 960, 1420
CviQI GTAC 6 cut(s) 360, 366, 596, 610, 744, 1172
DdeI CTNAG 3 cut(s) 78, 85, 895
DpnI GATC 8 cut(s) 21, 72, 83, 350, 657, 819, 942, 1203
DpnII GATC 8 cut(s) 19, 70, 81, 348, 655, 817, 940, 1201
DraIII CACNNNGTG 1 cut(s) 1133
DrdI GACNNNNNNGTC 2 cut(s) 30, 538
DseDI GACNNNNNNGTC 2 cut(s) 30, 538
Eam1104I CTCTTC 3 cut(s) 652, 1320, 1364
EarI CTCTTC 3 cut(s) 652, 1320, 1364
Eco130I CCWWGG 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 989
Eco91I GGTNACC 1 cut(s) 310
EcoNI CCTNNNNNAGG 2 cut(s) 99, 1325
EcoO109I RGGNCCY 1 cut(s) 32
EcoO65I GGTNACC 1 cut(s) 310
EcoRI GAATTC 2 cut(s) 389, 1141
EcoRII CCWGG 3 cut(s) 100, 370, 1320
EcoT14I CCWWGG 1 cut(s) 422
EcoT22I ATGCAT 2 cut(s) 862, 866
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 422
FaeI CATG 9 cut(s) 215, 452, 532, 620, 766, 864, 868, 963, 1423
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 18
FatI CATG 9 cut(s) 211, 448, 528, 616, 762, 860, 864, 959, 1419
FauI CCCGC 1 cut(s) 43
FauNDI CATATG 1 cut(s) 114
FbaI TGATCA 2 cut(s) 70, 1201
FriOI GRGCYC 1 cut(s) 122
FspBI CTAG 9 cut(s) 173, 192, 581, 651, 821, 875, 927, 933, 1151
GlaI GCGC 2 cut(s) 143, 441
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 1 cut(s) 775
HhaI GCGC 2 cut(s) 144, 442
Hin1II CATG 9 cut(s) 215, 452, 532, 620, 766, 864, 868, 963, 1423
Hin6I GCGC 2 cut(s) 142, 440
HinP1I GCGC 2 cut(s) 142, 440
HindIII AAGCTT 1 cut(s) 1022
HinfI GANTC 4 cut(s) 76, 383, 410, 585
HphI GGTGA 2 cut(s) 334, 1267
Hpy166II GTNNAC 3 cut(s) 406, 1082, 1264
Hpy188III TCNNGA 5 cut(s) 293, 352, 529, 763, 821
Hpy8I GTNNAC 3 cut(s) 406, 1082, 1264
HpyAV CCTTC 4 cut(s) 105, 300, 609, 1009
HpyCH4III ACNGT 4 cut(s) 480, 540, 1133, 1318
HpyCH4V TGCA 6 cut(s) 215, 488, 497, 860, 864, 1436
HpyF10VI GCNNNNNNNGC 5 cut(s) 494, 571, 927, 1106, 1385
HpyF3I CTNAG 3 cut(s) 78, 85, 895
Hsp92II CATG 9 cut(s) 215, 452, 532, 620, 766, 864, 868, 963, 1423
HspAI GCGC 2 cut(s) 142, 440
KpnI GGTACC 1 cut(s) 1175
Ksp22I TGATCA 2 cut(s) 70, 1201
KspI CCGCGG 1 cut(s) 39
Kzo9I GATC 8 cut(s) 19, 70, 81, 348, 655, 817, 940, 1201
LmnI GCTCC 4 cut(s) 254, 469, 521, 1412
LweI GCATC 3 cut(s) 408, 847, 1106
MaeI CTAG 9 cut(s) 173, 192, 581, 651, 821, 875, 927, 933, 1151
MaeIII GTNAC 4 cut(s) 166, 310, 490, 1123
MalI GATC 8 cut(s) 21, 72, 83, 350, 657, 819, 942, 1203
MboI GATC 8 cut(s) 19, 70, 81, 348, 655, 817, 940, 1201
MboII GAAGA 6 cut(s) 296, 639, 728, 982, 1337, 1381
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 8 cut(s) 131, 217, 389, 509, 659, 667, 1033, 1141
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 2 cut(s) 252, 693
Mph1103I ATGCAT 2 cut(s) 862, 866
MroXI GAANNNNTTC 3 cut(s) 701, 1023, 1354
MseI TTAA 2 cut(s) 1002, 1362
MslI CAYNNNNRTG 1 cut(s) 1363
MspA1I CMGCKG 1 cut(s) 38
MspCI CTTAAG 1 cut(s) 1361
MspR9I CCNGG 3 cut(s) 102, 372, 1322
MvaI CCWGG 3 cut(s) 102, 372, 1322
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 5 cut(s) 494, 571, 927, 1106, 1385
NdeI CATATG 1 cut(s) 114
NdeII GATC 8 cut(s) 19, 70, 81, 348, 655, 817, 940, 1201
NheI GCTAGC 1 cut(s) 926
NlaIII CATG 9 cut(s) 215, 452, 532, 620, 766, 864, 868, 963, 1423
NlaIV GGNNCC 4 cut(s) 34, 250, 376, 1173
NsiI ATGCAT 2 cut(s) 862, 866
NspI RCATGY 1 cut(s) 864
OliI CACNNNNGTG 1 cut(s) 1363
PaeI GCATGC 1 cut(s) 864
PagI TCATGA 2 cut(s) 528, 762
PdmI GAANNNNTTC 3 cut(s) 701, 1023, 1354
PfeI GAWTC 3 cut(s) 383, 410, 585
PfoI TCCNGGA 1 cut(s) 1320
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 32
PsiI TTATAA 1 cut(s) 1450
Psp5II RGGWCCY 1 cut(s) 32
Psp6I CCWGG 3 cut(s) 100, 370, 1320
PspEI GGTNACC 1 cut(s) 310
PspGI CCWGG 3 cut(s) 100, 370, 1320
PspN4I GGNNCC 4 cut(s) 34, 250, 376, 1173
PspPI GGNCC 2 cut(s) 32, 773
PspPPI RGGWCCY 1 cut(s) 32
PsrI GAACNNNNNNTAC 2 cut(s) 965, 997
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 6 cut(s) 361, 367, 597, 611, 745, 1173
RsaNI GTAC 6 cut(s) 360, 366, 596, 610, 744, 1172
RseI CAYNNNNRTG 1 cut(s) 1363
SacII CCGCGG 1 cut(s) 39
SaqAI TTAA 2 cut(s) 1002, 1362
Sau3AI GATC 8 cut(s) 19, 70, 81, 348, 655, 817, 940, 1201
Sau96I GGNCC 2 cut(s) 32, 773
ScaI AGTACT 2 cut(s) 361, 745
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 102, 372, 1322
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 3 cut(s) 408, 847, 1106
SfcI CTRYAG 2 cut(s) 27, 826
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 1363
SmlI CTYRAG 3 cut(s) 293, 1361, 1442
SmoI CTYRAG 3 cut(s) 293, 1361, 1442
SpeI ACTAGT 1 cut(s) 172
SphI GCATGC 1 cut(s) 864
Sse9I AATT 8 cut(s) 131, 217, 389, 509, 659, 667, 1033, 1141
SsiI CCGC 2 cut(s) 36, 38
SspMI CTAG 9 cut(s) 173, 192, 581, 651, 821, 875, 927, 933, 1151
StyD4I CCNGG 3 cut(s) 100, 370, 1320
StyI CCWWGG 1 cut(s) 422
TaaI ACNGT 4 cut(s) 480, 540, 1133, 1318
TaqI TCGA 6 cut(s) 22, 416, 705, 788, 1145, 1392
TaqII GACCGA 1 cut(s) 744
TasI AATT 8 cut(s) 131, 217, 389, 509, 659, 667, 1033, 1141
TatI WGTACW 3 cut(s) 359, 365, 743
TfiI GAWTC 3 cut(s) 383, 410, 585
Tru1I TTAA 2 cut(s) 1002, 1362
Tru9I TTAA 2 cut(s) 1002, 1362
TscAI CASTG 2 cut(s) 64, 1136
TspDTI ATGAA 5 cut(s) 402, 517, 881, 1308, 1440
TspRI CASTG 2 cut(s) 64, 1136
Vha464I CTTAAG 1 cut(s) 1361
VpaK11BI GGWCC 1 cut(s) 32
XagI CCTNNNNNAGG 2 cut(s) 99, 1325
XapI RAATTY 3 cut(s) 217, 389, 1141
XbaI TCTAGA 1 cut(s) 820
XceI RCATGY 1 cut(s) 864
XmnI GAANNNNTTC 3 cut(s) 701, 1023, 1354
XspI CTAG 9 cut(s) 173, 192, 581, 651, 821, 875, 927, 933, 1151
ZrmI AGTACT 2 cut(s) 361, 745
Zsp2I ATGCAT 2 cut(s) 862, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.