Rw2G000420

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001004
Physical Location & Seq
Forward (+)
376624 .. 386094
9471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G000420.1

Sequence Viewer

Length: 1341 bp
ATGAAAATGGAGAAAAGATCACAAATGCAAATAGGTGGTGCTCATGTACTAGTGTTTCCTTATCCAGTTCAAGGCCACATTTGCCCGATGGTTGAGTTCTCCAAACGCCTTGGTTCAAAGGTGACTGTAATCATCACAACCGTCTCTGCAGCCACCAAGTCCATGAAACAACTACTGGCAGCTCAACCCAAAAACACCTCTTTCAGGATCGAGCTCATTTCTGACGGCTCCGAACACCCCCAAAAGTCGGAAACTGCTGAAGAATACCTCGACCGTTTCAGAAGTGTCACTATGCAAAATCTATCCAACCTTATCACCAACATTAAGAACGAGAGTGCTACTCATGCCTTCGTCAACAATGATAGTAGTGATGAAGATGACGACGACTACCCCCTCAAGTGCATCGTTTACCACTCGGGCATGCCCTGGTTGTTAGACGTAGCGCGACAACATGGCATGGATGGAGCTCCATTTTTTACTTGTTCGTCTGCGGTCACTGCCATCTTTCATCACTTCTATGAGGGAGTGTTAAAGATTCCTCCAAAAGATGCTGCAGCTAGAGCATCTAGTACGACAATGCTAATGCCTTCCATGTCCGCACCCGTAGGGTTGAATGATCTACCATCGTTTCTCTCTGATGTTGATGCCTACCCAACTTATCTTAAACTTACCATGAACCAGTTCTCCAATATTGGAGAAGTTAAATGGATCTTCTATAGCACTTTTGAGAAGTTGGAGGACAAGGTAGTTAAATGGATGGAAAGTCAGGACTGGCCCGTGAAAACAGTAGGACCAACAATTCCCTCAACGTTTTTGGACAAGCACTCCAAGGAAGCTGGCTCGGTGGTCTATGTATCATTTGGAAGCTTGGCCAACCTAACAAAGGAGAAAATGGAGGAACTAGCATGGGGTCTAAATAATAGTAACTACCACTTCTTGTGGGTAATCAAAGAGTCAGAAAAGGAAAAGCTTCCTATCAATTTTTTCGAGGAGATATCAGAGAAGGGCCTTGTTGTGAGTTGGTGCTCCCAACTGCAAGTCCTGGCTCACAAGGCCGTGGGATGCTTTGTTACTCACTGTGGTTGGAATTCGATACTCGAAGCGTTGAACTTGGGAGTACCAATGGTGGCAGTGCCGCAATGGGCAGATCAGACAACGAATGCTAAGTTTGTGGTGGATGTGTGGAAAGTAGGAGTGAGAGTGAAGCAGGTCATGGACAAAGAGATGGGAATGGAGAGTATAAAGGCTTCGCAAATTTGGAAGGAGTTGGCTAGAGAGGCTGTGGATCAAGGAGGAAGTTCGGATAACAACATTGAGGACTTTGTGGCACAACTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

446

Amino Acids

49.96

Weight (kDa)

5.69

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 402 2.8e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Glyco_tran_28_C PF04101 294 - 394 1.4e-07 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1198
AccII CGCG 1 cut(s) 445
AciI CCGC 3 cut(s) 491, 597, 1136
AclI AACGTT 1 cut(s) 809
AclWI GGATC 3 cut(s) 215, 716, 1293
AcoI YGGCCR 1 cut(s) 870
AcsI RAATTY 2 cut(s) 1087, 1254
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 3 cut(s) 48, 571, 1119
AfiI CCNNNNNNNGG 4 cut(s) 71, 204, 247, 883
AgsI TTSAA 4 cut(s) 71, 117, 613, 1108
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 2 cut(s) 425, 1041
AloI GAACNNNNNNTCC 2 cut(s) 668, 700
AluBI AGCT 7 cut(s) 182, 214, 467, 557, 836, 867, 970
AluI AGCT 7 cut(s) 182, 214, 467, 557, 836, 867, 970
Alw21I GWGCWC 4 cut(s) 43, 216, 469, 1028
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 3 cut(s) 215, 716, 1293
Ama87I CYCGRG 1 cut(s) 415
AoxI GGCC 5 cut(s) 73, 773, 870, 1006, 1053
ApeKI GCWGC 4 cut(s) 149, 179, 551, 554
ApoI RAATTY 2 cut(s) 1087, 1254
Asp700I GAANNNNTTC 2 cut(s) 680, 969
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 3 cut(s) 774, 791, 1006
AsuHPI GGTGA 2 cut(s) 133, 307
AvaI CYCGRG 1 cut(s) 415
AvaII GGWCC 1 cut(s) 791
BalI TGGCCA 1 cut(s) 872
BanII GRGCYC 2 cut(s) 216, 469
BarI GAAGNNNNNNTAC 2 cut(s) 1231, 1263
Bbv12I GWGCWC 4 cut(s) 43, 216, 469, 1028
BbvI GCAGC 4 cut(s) 161, 191, 538, 566
BccI CCATC 6 cut(s) 82, 455, 509, 631, 751, 1219
BceAI ACGGC 2 cut(s) 241, 1040
BciT130I CCWGG 2 cut(s) 427, 1043
BcoDI GTCTC 1 cut(s) 148
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 5 cut(s) 50, 558, 567, 902, 1272
BfmI CTRYAG 3 cut(s) 147, 552, 715
BfuAI ACCTGC 1 cut(s) 1198
BisI GCNGC 5 cut(s) 150, 180, 552, 555, 1136
BlsI GCNGC 5 cut(s) 151, 181, 553, 556, 1137
Bme1390I CCNGG 2 cut(s) 427, 1043
Bme18I GGWCC 1 cut(s) 791
BmeT110I CYCGRG 1 cut(s) 415
BmgT120I GGNCC 3 cut(s) 774, 791, 1006
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 427, 1043
BmsI GCATC 5 cut(s) 411, 538, 572, 634, 1052
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpuEI CTTGAG 1 cut(s) 380
BsaJI CCNNGG 4 cut(s) 109, 425, 828, 1056
BsaXI ACNNNNNCTCC 6 cut(s) 668, 698, 809, 839, 1185, 1215
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 204, 247, 883
Bse1I ACTGG 4 cut(s) 65, 180, 679, 776
Bse3DI GCAATG 1 cut(s) 1145
BseBI CCWGG 2 cut(s) 427, 1043
BseDI CCNNGG 4 cut(s) 109, 425, 828, 1056
BseGI GGATG 4 cut(s) 466, 762, 1067, 1183
BseLI CCNNNNNNNGG 4 cut(s) 71, 204, 247, 883
BseMI GCAATG 1 cut(s) 1145
BseNI ACTGG 4 cut(s) 65, 180, 679, 776
BseRI GAGGAG 1 cut(s) 1004
BseXI GCAGC 4 cut(s) 161, 191, 538, 566
Bsh1236I CGCG 1 cut(s) 445
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 5 cut(s) 75, 775, 872, 1008, 1055
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 4 cut(s) 43, 216, 469, 1028
BsiHKCI CYCGRG 1 cut(s) 415
BslI CCNNNNNNNGG 4 cut(s) 71, 204, 247, 883
BsmAI GTCTC 1 cut(s) 148
BsmBI CGTCTC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 1165
BsnI GGCC 5 cut(s) 75, 775, 872, 1008, 1055
BsoBI CYCGRG 1 cut(s) 415
Bsp1286I GDGCHC 4 cut(s) 43, 216, 469, 1028
Bsp143I GATC 6 cut(s) 17, 207, 616, 708, 1147, 1285
BspACI CCGC 3 cut(s) 491, 597, 1136
BspANI GGCC 5 cut(s) 75, 775, 872, 1008, 1055
BspFNI CGCG 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 2 cut(s) 151, 556
BspMI ACCTGC 1 cut(s) 1198
BspPI GGATC 3 cut(s) 215, 716, 1293
BsrDI GCAATG 1 cut(s) 1145
BsrI ACTGG 4 cut(s) 65, 180, 679, 776
BssECI CCNNGG 4 cut(s) 109, 425, 828, 1056
BssMI GATC 6 cut(s) 17, 207, 616, 708, 1147, 1285
BssT1I CCWWGG 2 cut(s) 109, 828
Bst2UI CCWGG 2 cut(s) 427, 1043
Bst4CI ACNGT 5 cut(s) 127, 142, 275, 787, 1079
BstC8I GCNNGC 2 cut(s) 422, 838
BstDEI CTNAG 1 cut(s) 1164
BstDSI CCRYGG 1 cut(s) 1056
BstENI CCTNNNNNAGG 2 cut(s) 202, 881
BstF5I GGATG 4 cut(s) 466, 762, 1067, 1183
BstFNI CGCG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 6 cut(s) 20, 210, 619, 711, 1150, 1288
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 6 cut(s) 17, 207, 616, 708, 1147, 1285
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 6 cut(s) 81, 344, 497, 560, 1052, 1277
BstNI CCWGG 2 cut(s) 427, 1043
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 425, 1041
BstSFI CTRYAG 3 cut(s) 147, 552, 715
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 4 cut(s) 161, 191, 538, 566
BstX2I RGATCY 1 cut(s) 708
BstYI RGATCY 1 cut(s) 708
BsuRI GGCC 5 cut(s) 75, 775, 872, 1008, 1055
BtgI CCRYGG 1 cut(s) 1056
BtsCI GGATG 4 cut(s) 466, 762, 1067, 1183
BtsI GCAGTG 2 cut(s) 495, 1137
BtsIMutI CAGTG 3 cut(s) 495, 1075, 1137
BveI ACCTGC 1 cut(s) 1198
Cac8I GCNNGC 2 cut(s) 422, 838
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 3 cut(s) 774, 791, 1006
Csp6I GTAC 3 cut(s) 47, 570, 1118
CviQI GTAC 3 cut(s) 47, 570, 1118
DdeI CTNAG 1 cut(s) 1164
DpnI GATC 6 cut(s) 19, 209, 618, 710, 1149, 1287
DpnII GATC 6 cut(s) 17, 207, 616, 708, 1147, 1285
EaeI YGGCCR 1 cut(s) 870
Ecl136II GAGCTC 2 cut(s) 214, 467
Eco130I CCWWGG 2 cut(s) 109, 828
Eco24I GRGCYC 2 cut(s) 216, 469
Eco32I GATATC 1 cut(s) 996
Eco47I GGWCC 1 cut(s) 791
Eco53kI GAGCTC 2 cut(s) 214, 467
Eco57I CTGAAG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 415
EcoICRI GAGCTC 2 cut(s) 214, 467
EcoNI CCTNNNNNAGG 2 cut(s) 202, 881
EcoO109I RGGNCCY 1 cut(s) 1006
EcoRI GAATTC 1 cut(s) 1087
EcoRII CCWGG 2 cut(s) 425, 1041
EcoRV GATATC 1 cut(s) 996
EcoT14I CCWWGG 2 cut(s) 109, 828
EcoT38I GRGCYC 2 cut(s) 216, 469
ErhI CCWWGG 2 cut(s) 109, 828
Esp3I CGTCTC 1 cut(s) 148
Fnu4HI GCNGC 5 cut(s) 150, 180, 552, 555, 1136
FokI GGATG 4 cut(s) 473, 769, 1074, 1190
FriOI GRGCYC 2 cut(s) 216, 469
Fsp4HI GCNGC 5 cut(s) 150, 180, 552, 555, 1136
FspBI CTAG 5 cut(s) 50, 558, 567, 902, 1272
GlaI GCGC 1 cut(s) 444
GluI GCNGC 5 cut(s) 150, 180, 552, 555, 1136
HaeIII GGCC 5 cut(s) 75, 775, 872, 1008, 1055
HhaI GCGC 1 cut(s) 445
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 2 cut(s) 865, 968
HinfI GANTC 2 cut(s) 535, 953
HphI GGTGA 2 cut(s) 133, 307
Hpy166II GTNNAC 2 cut(s) 355, 409
Hpy188I TCNGA 9 cut(s) 223, 232, 250, 281, 637, 958, 1000, 1152, 1303
Hpy188III TCNNGA 2 cut(s) 205, 767
Hpy8I GTNNAC 2 cut(s) 355, 409
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 4 cut(s) 358, 597, 997, 1255
HpyCH4III ACNGT 5 cut(s) 127, 142, 275, 787, 1079
HpyCH4IV ACGT 2 cut(s) 438, 809
HpyCH4V TGCA 6 cut(s) 28, 149, 295, 402, 554, 1036
HpyF10VI GCNNNNNNNGC 6 cut(s) 81, 344, 497, 560, 1052, 1277
HpyF3I CTNAG 1 cut(s) 1164
HpySE526I ACGT 2 cut(s) 438, 809
HspAI GCGC 1 cut(s) 443
Kzo9I GATC 6 cut(s) 17, 207, 616, 708, 1147, 1285
LmnI GCTCC 4 cut(s) 233, 464, 472, 1031
Lsp1109I GCAGC 4 cut(s) 161, 191, 538, 566
LweI GCATC 5 cut(s) 411, 538, 572, 634, 1052
MaeI CTAG 5 cut(s) 50, 558, 567, 902, 1272
MaeII ACGT 2 cut(s) 438, 809
MaeIII GTNAC 5 cut(s) 121, 286, 493, 923, 1069
MalI GATC 6 cut(s) 19, 209, 618, 710, 1149, 1287
MboI GATC 6 cut(s) 17, 207, 616, 708, 1147, 1285
MboII GAAGA 3 cut(s) 272, 386, 703
MflI RGATCY 1 cut(s) 708
MhlI GDGCHC 4 cut(s) 43, 216, 469, 1028
MlsI TGGCCA 1 cut(s) 872
MluCI AATT 4 cut(s) 798, 979, 1087, 1254
MluNI TGGCCA 1 cut(s) 872
MlyI GAGTC 1 cut(s) 962
MmeI TCCRAC 4 cut(s) 228, 330, 714, 1064
Mox20I TGGCCA 1 cut(s) 872
MroXI GAANNNNTTC 2 cut(s) 680, 969
MscI TGGCCA 1 cut(s) 872
MseI TTAA 5 cut(s) 324, 530, 663, 702, 750
MslI CAYNNNNRTG 1 cut(s) 516
Msp20I TGGCCA 1 cut(s) 872
MspR9I CCNGG 2 cut(s) 427, 1043
Mva1269I GAATGC 1 cut(s) 1165
MvaI CCWGG 2 cut(s) 427, 1043
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 6 cut(s) 81, 344, 497, 560, 1052, 1277
NdeII GATC 6 cut(s) 17, 207, 616, 708, 1147, 1285
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 121, 286, 493
NspI RCATGY 1 cut(s) 424
PaeI GCATGC 1 cut(s) 424
PctI GAATGC 1 cut(s) 1165
PdmI GAANNNNTTC 2 cut(s) 680, 969
PfeI GAWTC 1 cut(s) 535
PkrI GCNGC 5 cut(s) 151, 181, 553, 556, 1137
PleI GAGTC 1 cut(s) 961
PpsI GAGTC 1 cut(s) 961
Psp124BI GAGCTC 2 cut(s) 216, 469
Psp1406I AACGTT 1 cut(s) 809
Psp6I CCWGG 2 cut(s) 425, 1041
PspGI CCWGG 2 cut(s) 425, 1041
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 3 cut(s) 774, 791, 1006
PstI CTGCAG 2 cut(s) 151, 556
PsuI RGATCY 1 cut(s) 708
RsaI GTAC 3 cut(s) 48, 571, 1119
RsaNI GTAC 3 cut(s) 47, 570, 1118
RseI CAYNNNNRTG 1 cut(s) 516
SacI GAGCTC 2 cut(s) 216, 469
SaqAI TTAA 5 cut(s) 324, 530, 663, 702, 750
SatI GCNGC 5 cut(s) 150, 180, 552, 555, 1136
Sau3AI GATC 6 cut(s) 17, 207, 616, 708, 1147, 1285
Sau96I GGNCC 3 cut(s) 774, 791, 1006
SchI GAGTC 1 cut(s) 962
ScrFI CCNGG 2 cut(s) 427, 1043
SduI GDGCHC 4 cut(s) 43, 216, 469, 1028
SfaNI GCATC 5 cut(s) 411, 538, 572, 634, 1052
SfcI CTRYAG 3 cut(s) 147, 552, 715
SinI GGWCC 1 cut(s) 791
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SpeI ACTAGT 1 cut(s) 49
SphI GCATGC 1 cut(s) 424
Sse9I AATT 4 cut(s) 798, 979, 1087, 1254
SsiI CCGC 3 cut(s) 491, 597, 1136
SspI AATATT 1 cut(s) 691
SspMI CTAG 5 cut(s) 50, 558, 567, 902, 1272
SstI GAGCTC 2 cut(s) 216, 469
StyD4I CCNGG 2 cut(s) 425, 1041
StyI CCWWGG 2 cut(s) 109, 828
TaaI ACNGT 5 cut(s) 127, 142, 275, 787, 1079
TaiI ACGT 2 cut(s) 441, 812
TaqI TCGA 6 cut(s) 210, 270, 987, 1091, 1098, 1336
TasI AATT 4 cut(s) 798, 979, 1087, 1254
TatI WGTACW 1 cut(s) 46
TauI GCSGC 1 cut(s) 1138
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 5 cut(s) 324, 530, 663, 702, 750
Tru9I TTAA 5 cut(s) 324, 530, 663, 702, 750
TscAI CASTG 3 cut(s) 502, 1082, 1137
TseFI GTSAC 3 cut(s) 121, 286, 493
TseI GCWGC 4 cut(s) 149, 179, 551, 554
Tsp45I GTSAC 3 cut(s) 121, 286, 493
TspDTI ATGAA 5 cut(s) 17, 179, 387, 497, 689
TspRI CASTG 3 cut(s) 502, 1082, 1137
VpaK11BI GGWCC 1 cut(s) 791
XagI CCTNNNNNAGG 2 cut(s) 202, 881
XapI RAATTY 2 cut(s) 1087, 1254
XceI RCATGY 1 cut(s) 424
XmnI GAANNNNTTC 2 cut(s) 680, 969
XspI CTAG 5 cut(s) 50, 558, 567, 902, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.