Rroxscaffold_2G00155790

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001004
Physical Location & Seq
Reverse (-)
92300321 .. 92302832
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155790.1

Sequence Viewer

Length: 1548 bp
ATGTATTTATGTTTTCGATCATCAGCCAAATTAACAAACAGAGATAGCAGAACCATAAGCATATACCTAATTAGGATGAAAATGGAGAAAAGATCACAAATGCAAATAGGTGGTGCTCATGTGCTAGTGTTTCCTTATCCAGTTCAGGGCCACATTTGCCCGATGGTTGAGTTCTCCAAACGCCTTGCCTCAAAGGGTGTCAGGGTCACCGTAATCATCACAACCGTCTCTGCAGCCACCAAGTCCATGAAGCAACTACTGGCAGCTCAACCCAAAAACACCTCTTTCAGGATCGAGGTCATTTCTGACGGCTCCGAACAACTCCAAAAGTCGGAAACTGCTGAAGAATACCTCGACCGTTTCAGAAGTGTCACTATGCAAAATCTATCCAACCTCATCATCAACATTAAGAACAAGAGTGCTACTCATGCCTTCGTCAACAATGATAGTAGTGATGAAGATGACGACGACTACCCCCTCAAGTGCATCGTTTACCACTCGGGCATGCCCTGGGTGTTAGACGTAGCGCGACAACATGGCATGGATGGAGCTCCATTTTTCACTTGTTCGTCTGCGGTCACTGCCATCTTTCATCACTTCTATGAGGGAGTGTTAAAGATTCCTTCAAAAGATGCTGCAGCTAGAACATCTAGTACCACAATGCTAATGCCTTCCATGCCCGCACCCCTAGGGTTGAATGATCTACCATCGTTTCTCTCTGATGTTGATGCCTACCCAACTTATCTTAAACTTACCATGAACCAGTTCTCCAATATTGGAGAAGTTAAATGGATCTTCTATAGCACTTTTGAGAAGTTGGAGGACAAGGTGGTTAAATGGATGGAAAGTCAGGACTGGCCCGTGAAAACAATAGGACCAACAATTCCCTCAACGTTTTTGGACAAGCGTTTGGAAGATGAGAAAGACTATAGTCTTAGCCTGTTCAAGCCTGATGTGGAGACTTGCACGAAGTGGCTAGACTCCAAGGGAGCTGGCTCGGTGGTCTATGTATCATTTGGAAGCTTGGCCAACCTAACAAAGGAGCAAATGGAGGAACTAGCATGGGGTCTAAATAATAGTAACTACCACTTCTTGTGGGTAATCAAAGAGTCAGAAAAGGAAAAGCTTCCTATCAATTTTTTTGAGGAGATATCAGAGAAGGGCCTTGTTGTGAGTTGGTGCTCCCAACTGCAAGTCCTGGCTCACAAGGCCGTGGGATGCTTTGTTACTCACTGTGGTTGGAATTCGATACTCGAAGCGTTGAGCTTGGGAGTACCAATGGTGGCAGTGCCGCAATGGGCAGATCAGACAACGAATGCTAAGTTTGTGGTGGATGTGTGGAAAGTAGGAGTGAGAGTGAAGTTGAATGAGAAAGGCCTGATTACAAAAGAAGAATTGGTAATGCGTGTTAGGCAGGTCATGGTCAAAGAGATGGGAATGGAGATTATAAAGGCTTCGCAAATTTGGAAGGAGTTGGCTAGAGAGGCTGTGGATCAAGGAGGAAGTTCGGATAACAACATTGAGGACTTTGTGGCACAACTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

515

Amino Acids

58.12

Weight (kDa)

6.25

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 40 - 492 2.2e-32 UDP-glucoronosyl and UDP-glucosyl transferase
Glyco_tran_28_C PF04101 344 - 446 5.8e-08 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1448
Acc36I ACCTGC 1 cut(s) 1405
AccII CGCG 1 cut(s) 529
AciI CCGC 3 cut(s) 575, 681, 1292
AclI AACGTT 1 cut(s) 893
AclWI GGATC 3 cut(s) 299, 800, 1500
AcoI YGGCCR 1 cut(s) 1026
AcsI RAATTY 2 cut(s) 1243, 1461
AcuI CTGAAG 1 cut(s) 363
AdeI CACNNNGTG 1 cut(s) 972
AfaI GTAC 2 cut(s) 655, 1275
AfiI CCNNNNNNNGG 4 cut(s) 146, 288, 331, 1039
AgsI TTSAA 4 cut(s) 627, 697, 946, 1366
AjnI CCWGG 2 cut(s) 509, 1197
AloI GAACNNNNNNTCC 2 cut(s) 752, 784
AluBI AGCT 7 cut(s) 266, 551, 641, 992, 1023, 1126, 1266
AluI AGCT 7 cut(s) 266, 551, 641, 992, 1023, 1126, 1266
Alw21I GWGCWC 3 cut(s) 118, 553, 1184
Alw26I GTCTC 2 cut(s) 232, 953
AlwI GGATC 3 cut(s) 299, 800, 1500
Ama87I CYCGRG 1 cut(s) 499
AoxI GGCC 6 cut(s) 148, 857, 1026, 1162, 1209, 1375
ApeKI GCWGC 4 cut(s) 233, 263, 635, 638
ApoI RAATTY 2 cut(s) 1243, 1461
Asp700I GAANNNNTTC 2 cut(s) 764, 1125
AspA2I CCTAGG 1 cut(s) 688
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 4 cut(s) 148, 858, 875, 1162
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 875
AvrII CCTAGG 1 cut(s) 688
BalI TGGCCA 1 cut(s) 1028
BanII GRGCYC 1 cut(s) 553
Bbv12I GWGCWC 3 cut(s) 118, 553, 1184
BbvI GCAGC 4 cut(s) 245, 275, 622, 650
BccI CCATC 6 cut(s) 157, 539, 593, 715, 835, 1426
BceAI ACGGC 2 cut(s) 325, 1196
BciT130I CCWGG 2 cut(s) 511, 1199
BcoDI GTCTC 2 cut(s) 232, 953
BfaI CTAG 7 cut(s) 125, 642, 651, 689, 977, 1058, 1479
BfmI CTRYAG 4 cut(s) 231, 636, 799, 928
BfuAI ACCTGC 1 cut(s) 1405
BisI GCNGC 5 cut(s) 234, 264, 636, 639, 1292
BlnI CCTAGG 1 cut(s) 688
BlsI GCNGC 5 cut(s) 235, 265, 637, 640, 1293
Bme1390I CCNGG 2 cut(s) 511, 1199
Bme18I GGWCC 1 cut(s) 875
BmeT110I CYCGRG 1 cut(s) 499
BmgT120I GGNCC 4 cut(s) 148, 858, 875, 1162
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 511, 1199
BmsI GCATC 4 cut(s) 495, 622, 718, 1208
BoxI GACNNNNGTC 1 cut(s) 930
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BpuEI CTTGAG 1 cut(s) 464
BsaJI CCNNGG 5 cut(s) 509, 510, 688, 984, 1212
BsaXI ACNNNNNCTCC 4 cut(s) 752, 782, 1341, 1371
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 288, 331, 1039
Bse1I ACTGG 4 cut(s) 140, 264, 763, 860
Bse3DI GCAATG 1 cut(s) 1301
BseBI CCWGG 2 cut(s) 511, 1199
BseDI CCNNGG 5 cut(s) 509, 510, 688, 984, 1212
BseGI GGATG 5 cut(s) 81, 550, 846, 1223, 1339
BseLI CCNNNNNNNGG 4 cut(s) 146, 288, 331, 1039
BseMI GCAATG 1 cut(s) 1301
BseNI ACTGG 4 cut(s) 140, 264, 763, 860
BseRI GAGGAG 1 cut(s) 1160
BseXI GCAGC 4 cut(s) 245, 275, 622, 650
Bsh1236I CGCG 1 cut(s) 529
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 6 cut(s) 150, 859, 1028, 1164, 1211, 1377
BsiEI CGRYCG 1 cut(s) 358
BsiHKAI GWGCWC 3 cut(s) 118, 553, 1184
BsiHKCI CYCGRG 1 cut(s) 499
BslI CCNNNNNNNGG 4 cut(s) 146, 288, 331, 1039
BsmAI GTCTC 2 cut(s) 232, 953
BsmBI CGTCTC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 1321
BsnI GGCC 6 cut(s) 150, 859, 1028, 1164, 1211, 1377
BsoBI CYCGRG 1 cut(s) 499
Bsp1286I GDGCHC 3 cut(s) 118, 553, 1184
Bsp143I GATC 7 cut(s) 17, 92, 291, 700, 792, 1303, 1492
BspACI CCGC 3 cut(s) 575, 681, 1292
BspANI GGCC 6 cut(s) 150, 859, 1028, 1164, 1211, 1377
BspFNI CGCG 1 cut(s) 529
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 2 cut(s) 235, 640
BspMI ACCTGC 1 cut(s) 1405
BspPI GGATC 3 cut(s) 299, 800, 1500
BsrDI GCAATG 1 cut(s) 1301
BsrI ACTGG 4 cut(s) 140, 264, 763, 860
BssECI CCNNGG 5 cut(s) 509, 510, 688, 984, 1212
BssMI GATC 7 cut(s) 17, 92, 291, 700, 792, 1303, 1492
BssT1I CCWWGG 2 cut(s) 688, 984
Bst2UI CCWGG 2 cut(s) 511, 1199
Bst4CI ACNGT 4 cut(s) 211, 226, 359, 1235
BstC8I GCNNGC 3 cut(s) 506, 681, 994
BstDEI CTNAG 2 cut(s) 935, 1320
BstDSI CCRYGG 1 cut(s) 1212
BstEII GGTNACC 1 cut(s) 205
BstENI CCTNNNNNAGG 2 cut(s) 286, 1037
BstF5I GGATG 5 cut(s) 81, 550, 846, 1223, 1339
BstFNI CGCG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 7 cut(s) 20, 95, 294, 703, 795, 1306, 1495
BstMAI GTCTC 2 cut(s) 232, 953
BstMBI GATC 7 cut(s) 17, 92, 291, 700, 792, 1303, 1492
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 7 cut(s) 156, 428, 581, 676, 1208, 1411, 1484
BstNI CCWGG 2 cut(s) 511, 1199
BstNSI RCATGY 1 cut(s) 508
BstPAI GACNNNNGTC 1 cut(s) 930
BstPI GGTNACC 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 509, 1197
BstSFI CTRYAG 4 cut(s) 231, 636, 799, 928
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 4 cut(s) 245, 275, 622, 650
BstX2I RGATCY 1 cut(s) 792
BstYI RGATCY 1 cut(s) 792
BsuRI GGCC 6 cut(s) 150, 859, 1028, 1164, 1211, 1377
BtgI CCRYGG 1 cut(s) 1212
BtsCI GGATG 5 cut(s) 81, 550, 846, 1223, 1339
BtsI GCAGTG 2 cut(s) 579, 1293
BtsIMutI CAGTG 3 cut(s) 579, 1231, 1293
BveI ACCTGC 1 cut(s) 1405
Cac8I GCNNGC 3 cut(s) 506, 681, 994
CfoI GCGC 1 cut(s) 529
Cfr13I GGNCC 4 cut(s) 148, 858, 875, 1162
Csp6I GTAC 2 cut(s) 654, 1274
CviQI GTAC 2 cut(s) 654, 1274
DdeI CTNAG 2 cut(s) 935, 1320
DpnI GATC 7 cut(s) 19, 94, 293, 702, 794, 1305, 1494
DpnII GATC 7 cut(s) 17, 92, 291, 700, 792, 1303, 1492
DraIII CACNNNGTG 1 cut(s) 972
EaeI YGGCCR 1 cut(s) 1026
Ecl136II GAGCTC 1 cut(s) 551
Eco130I CCWWGG 2 cut(s) 688, 984
Eco147I AGGCCT 1 cut(s) 1377
Eco24I GRGCYC 1 cut(s) 553
Eco32I GATATC 1 cut(s) 1152
Eco47I GGWCC 1 cut(s) 875
Eco53kI GAGCTC 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 499
Eco91I GGTNACC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 551
EcoNI CCTNNNNNAGG 2 cut(s) 286, 1037
EcoO109I RGGNCCY 1 cut(s) 1162
EcoO65I GGTNACC 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 1243
EcoRII CCWGG 2 cut(s) 509, 1197
EcoRV GATATC 1 cut(s) 1152
EcoT14I CCWWGG 2 cut(s) 688, 984
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 2 cut(s) 688, 984
Esp3I CGTCTC 1 cut(s) 232
FauI CCCGC 1 cut(s) 688
Fnu4HI GCNGC 5 cut(s) 234, 264, 636, 639, 1292
FokI GGATG 5 cut(s) 88, 557, 853, 1230, 1346
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 5 cut(s) 234, 264, 636, 639, 1292
FspBI CTAG 7 cut(s) 125, 642, 651, 689, 977, 1058, 1479
GlaI GCGC 1 cut(s) 528
GluI GCNGC 5 cut(s) 234, 264, 636, 639, 1292
HaeIII GGCC 6 cut(s) 150, 859, 1028, 1164, 1211, 1377
HhaI GCGC 1 cut(s) 529
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 2 cut(s) 1021, 1124
HinfI GANTC 3 cut(s) 619, 980, 1109
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 439, 493
Hpy188I TCNGA 9 cut(s) 307, 316, 334, 365, 721, 1114, 1156, 1308, 1510
Hpy188III TCNNGA 2 cut(s) 289, 851
Hpy8I GTNNAC 2 cut(s) 439, 493
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 5 cut(s) 442, 633, 681, 1153, 1462
HpyCH4III ACNGT 4 cut(s) 211, 226, 359, 1235
HpyCH4IV ACGT 2 cut(s) 522, 893
HpyCH4V TGCA 7 cut(s) 103, 233, 379, 486, 638, 966, 1192
HpyF10VI GCNNNNNNNGC 7 cut(s) 156, 428, 581, 676, 1208, 1411, 1484
HpyF3I CTNAG 2 cut(s) 935, 1320
HpySE526I ACGT 2 cut(s) 522, 893
HspAI GCGC 1 cut(s) 527
Kzo9I GATC 7 cut(s) 17, 92, 291, 700, 792, 1303, 1492
LmnI GCTCC 6 cut(s) 317, 548, 556, 989, 1042, 1187
Lsp1109I GCAGC 4 cut(s) 245, 275, 622, 650
LweI GCATC 4 cut(s) 495, 622, 718, 1208
MaeI CTAG 7 cut(s) 125, 642, 651, 689, 977, 1058, 1479
MaeII ACGT 2 cut(s) 522, 893
MaeIII GTNAC 5 cut(s) 205, 370, 577, 1079, 1225
MalI GATC 7 cut(s) 19, 94, 293, 702, 794, 1305, 1494
MboI GATC 7 cut(s) 17, 92, 291, 700, 792, 1303, 1492
MboII GAAGA 5 cut(s) 356, 470, 787, 926, 1403
MflI RGATCY 1 cut(s) 792
MhlI GDGCHC 3 cut(s) 118, 553, 1184
MlsI TGGCCA 1 cut(s) 1028
MluCI AATT 7 cut(s) 29, 69, 882, 1135, 1243, 1394, 1461
MluNI TGGCCA 1 cut(s) 1028
MlyI GAGTC 2 cut(s) 974, 1118
MmeI TCCRAC 4 cut(s) 312, 414, 798, 1220
Mox20I TGGCCA 1 cut(s) 1028
MroXI GAANNNNTTC 2 cut(s) 764, 1125
MscI TGGCCA 1 cut(s) 1028
MseI TTAA 6 cut(s) 32, 408, 614, 747, 786, 834
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 1028
MspR9I CCNGG 2 cut(s) 511, 1199
Mva1269I GAATGC 1 cut(s) 1321
MvaI CCWGG 2 cut(s) 511, 1199
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 7 cut(s) 156, 428, 581, 676, 1208, 1411, 1484
NdeII GATC 7 cut(s) 17, 92, 291, 700, 792, 1303, 1492
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 3 cut(s) 205, 370, 577
NspI RCATGY 1 cut(s) 508
PaeI GCATGC 1 cut(s) 508
PasI CCCWGGG 1 cut(s) 510
PceI AGGCCT 1 cut(s) 1377
PctI GAATGC 1 cut(s) 1321
PdmI GAANNNNTTC 2 cut(s) 764, 1125
PfeI GAWTC 1 cut(s) 619
PkrI GCNGC 5 cut(s) 235, 265, 637, 640, 1293
PleI GAGTC 2 cut(s) 974, 1117
PpsI GAGTC 2 cut(s) 974, 1117
PshAI GACNNNNGTC 1 cut(s) 930
PsiI TTATAA 1 cut(s) 1448
Psp124BI GAGCTC 1 cut(s) 553
Psp1406I AACGTT 1 cut(s) 893
Psp6I CCWGG 2 cut(s) 509, 1197
PspEI GGTNACC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 509, 1197
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 4 cut(s) 148, 858, 875, 1162
PsrI GAACNNNNNNTAC 2 cut(s) 637, 669
PstI CTGCAG 2 cut(s) 235, 640
PsuI RGATCY 1 cut(s) 792
RsaI GTAC 2 cut(s) 655, 1275
RsaNI GTAC 2 cut(s) 654, 1274
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 553
SaqAI TTAA 6 cut(s) 32, 408, 614, 747, 786, 834
SatI GCNGC 5 cut(s) 234, 264, 636, 639, 1292
Sau3AI GATC 7 cut(s) 17, 92, 291, 700, 792, 1303, 1492
Sau96I GGNCC 4 cut(s) 148, 858, 875, 1162
SchI GAGTC 2 cut(s) 974, 1118
ScrFI CCNGG 2 cut(s) 511, 1199
SduI GDGCHC 3 cut(s) 118, 553, 1184
SfaNI GCATC 4 cut(s) 495, 622, 718, 1208
SfcI CTRYAG 4 cut(s) 231, 636, 799, 928
SinI GGWCC 1 cut(s) 875
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SphI GCATGC 1 cut(s) 508
Sse9I AATT 7 cut(s) 29, 69, 882, 1135, 1243, 1394, 1461
SseBI AGGCCT 1 cut(s) 1377
SsiI CCGC 3 cut(s) 575, 681, 1292
SspI AATATT 1 cut(s) 775
SspMI CTAG 7 cut(s) 125, 642, 651, 689, 977, 1058, 1479
SstI GAGCTC 1 cut(s) 553
StuI AGGCCT 1 cut(s) 1377
StyD4I CCNGG 2 cut(s) 509, 1197
StyI CCWWGG 2 cut(s) 688, 984
TaaI ACNGT 4 cut(s) 211, 226, 359, 1235
TaiI ACGT 2 cut(s) 525, 896
TaqI TCGA 6 cut(s) 16, 294, 354, 1247, 1254, 1543
TasI AATT 7 cut(s) 29, 69, 882, 1135, 1243, 1394, 1461
TauI GCSGC 1 cut(s) 1294
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 6 cut(s) 32, 408, 614, 747, 786, 834
Tru9I TTAA 6 cut(s) 32, 408, 614, 747, 786, 834
TscAI CASTG 3 cut(s) 586, 1238, 1293
TseFI GTSAC 3 cut(s) 205, 370, 577
TseI GCWGC 4 cut(s) 233, 263, 635, 638
Tsp45I GTSAC 3 cut(s) 205, 370, 577
TspDTI ATGAA 5 cut(s) 92, 263, 471, 581, 773
TspRI CASTG 3 cut(s) 586, 1238, 1293
VpaK11BI GGWCC 1 cut(s) 875
XagI CCTNNNNNAGG 2 cut(s) 286, 1037
XapI RAATTY 2 cut(s) 1243, 1461
XceI RCATGY 1 cut(s) 508
XmaJI CCTAGG 1 cut(s) 688
XmnI GAANNNNTTC 2 cut(s) 764, 1125
XspI CTAG 7 cut(s) 125, 642, 651, 689, 977, 1058, 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.